Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 2.1e-263 911.8 453 100.0
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 4.6e-258 894.0 453 98.0
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 7.4e-256 886.7 453 97.1
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 4.8e-239 830.9 453 90.1
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 1.0e-233 813.1 453 89.2
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 2.4e-206 722.2 456 81.1
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 1.5e-192 676.4 444 77.7
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 1.5e-184 649.8 395 78.2
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 2.6e-184 649.0 395 78.2
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 3.2e-182 642.1 471 67.1
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 7.1e-182 641.0 469 68.7
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 9.2e-182 640.6 470 67.2
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 3.3e-179 632.1 468 68.4
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 1.3e-175 620.2 458 65.9
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 6.4e-175 617.8 470 64.7
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 1.4e-174 616.7 463 67.0
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 5.4e-174 614.8 470 67.0
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 2.1e-173 612.8 467 66.4
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 1.0e-172 610.5 471 66.5
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 1.7e-172 609.8 459 65.6
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 5.1e-172 608.2 405 71.4
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 6.6e-172 607.8 454 66.3
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 1.5e-171 606.7 455 66.6
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 1.9e-171 606.3 461 66.4
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 1.9e-171 606.3 475 63.2
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 5.6e-171 604.7 458 65.1
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 5.6e-171 604.7 454 66.1
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 9.6e-171 604.0 459 66.9
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 9.6e-171 604.0 462 63.9
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 1.6e-170 603.2 455 65.9
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 1.6e-170 603.2 450 66.9
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 1.6e-170 603.2 474 64.1
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 2.1e-170 602.8 460 67.4
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 2.8e-170 602.4 473 64.7
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 2.8e-170 602.4 426 69.5
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 3.6e-170 602.1 470 65.7
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 3.6e-170 602.1 463 63.7
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 6.2e-170 601.3 379 74.1
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 1.4e-169 600.1 460 67.0
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 1.4e-169 600.1 456 65.8
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 1.8e-169 599.7 454 65.6
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 1.8e-169 599.7 454 65.6
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 9.0e-169 597.4 456 65.4
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 9.0e-169 597.4 463 64.1
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 1.2e-168 597.0 380 73.2
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 1.5e-168 596.7 460 64.6
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 2.0e-168 596.3 468 64.5
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 4.5e-168 595.1 464 65.9
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 4.5e-168 595.1 378 73.3
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 5.8e-168 594.7 464 65.5
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 1.1e-166 590.5 379 72.3
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 3.2e-166 589.0 476 62.6
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 4.2e-166 588.6 448 65.8
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 4.2e-166 588.6 380 73.2
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 1.2e-165 587.0 466 64.6
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 6.0e-165 584.7 468 65.6
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 3.0e-164 582.4 472 61.7
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 8.7e-164 580.9 453 63.8
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 2.5e-163 579.3 460 63.5
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 5.6e-163 578.2 477 61.2
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 1.3e-162 577.0 396 68.9
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 8.1e-162 574.3 369 72.6
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 1.8e-161 573.2 435 65.3
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 1.5e-160 570.1 430 65.6
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 1.5e-160 570.1 466 62.4
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 2.0e-160 569.7 465 60.4
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 3.4e-160 568.9 465 60.6
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 4.5e-160 568.5 381 70.6
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 2.9e-159 565.8 381 70.3
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 2.9e-159 565.8 392 68.4
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 2.9e-159 565.8 394 68.3
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 3.8e-159 565.5 381 70.1
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 4.9e-159 565.1 393 68.2
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 8.4e-159 564.3 398 67.1
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 4.6e-157 558.5 381 69.0
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 1.3e-156 557.0 405 66.4
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 1.1e-155 553.9 459 60.1
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 4.3e-155 552.0 482 61.8
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 7.4e-155 551.2 506 57.3
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 2.8e-154 549.3 334 76.9
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 6.9e-153 544.7 428 62.9
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 1.2e-152 543.9 418 65.1
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 1.4e-150 537.0 335 74.9
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 1.6e-149 533.5 336 74.7
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 4.6e-149 531.9 492 57.1
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 4.6e-149 531.9 367 65.7
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 4.6e-149 531.9 503 56.7
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 2.5e-147 526.2 367 65.4
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 4.8e-146 521.9 405 65.2
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 2.7e-141 506.1 453 58.9
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 6.1e-141 505.0 421 60.3
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 1.1e-137 494.2 397 62.7
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 4.1e-137 492.3 426 59.4
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 9.1e-137 491.1 317 71.3
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 6.1e-133 478.4 381 62.5
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 9.7e-131 471.1 453 55.2
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 1.4e-129 467.2 281 77.6
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 1.2e-128 464.2 381 59.8
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 4.4e-123 445.7 357 59.7
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 3.7e-122 442.6 459 53.4
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 2.4e-121 439.9 458 53.7
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 5.9e-120 435.3 459 52.5
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 2.2e-114 416.8 217 90.8
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 2.7e-112 409.8 419 53.7
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 7.7e-112 408.3 458 50.9
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 3.0e-108 396.4 244 83.2
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 3.7e-106 389.4 343 61.8
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 5.5e-102 375.6 278 67.6
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 8.0e-93 345.1 209 77.0
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 1.2e-88 331.3 363 46.0
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 1.7e-87 327.4 408 44.4
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 1.1e-81 308.1 375 43.7
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 7.0e-81 305.4 170 84.1
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 6.0e-80 302.4 307 54.4
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.0e-79 301.6 300 52.7
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 1.4e-76 291.2 175 78.3
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 3.5e-72 276.6 279 47.7
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 2.3e-71 273.9 253 57.7
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 2.8e-69 266.9 251 55.4
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 1.2e-67 261.5 246 54.5
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 7.6e-67 258.8 250 52.8
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 8.7e-55 218.8 292 43.8
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 5.6e-54 216.1 173 60.1
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 6.2e-53 212.6 244 53.7
CAN.G403.12 Capsicum annuum HOM05D005258 ORTHO05D006525 2.9e-50 203.8 159 68.6
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 1.2e-48 198.4 241 48.5
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 7.1e-41 172.6 95 81.1
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 1.2e-35 155.2 88 77.3
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 6.3e-29 132.9 143 51.0
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 3.1e-28 130.6 75 77.3
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 2.9e-26 124.0 364 30.8
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.4e-25 121.7 225 38.2
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 3.9e-23 113.6 67 82.1
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 1.3e-21 108.6 72 76.4
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 1.2e-19 102.1 130 46.2
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 1.2e-16 92.0 55 74.5
MCO01G624 Micromonas commoda HOM05D005258 ORTHO05D006525 3.3e-14 84.0 379 24.8
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 1.4e-12 78.6 63 60.3
Lsat_1_v5_gn_7_20901 Lactuca sativa HOM05D005258 ORTHO05D006525 2.5e-09 67.8 38 71.1
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 5.5e-09 66.6 81 39.5
CAN.G1236.5 Capsicum annuum HOM05D001621 ORTHO05D013110 1.6e-08 65.1 39 82.1
CAN.G140.11 Capsicum annuum HOM05D001621 ORTHO05D013110 1.6e-08 65.1 39 82.1
SalBow6G4442 Salvia bowleyana HOM05D005258 ORTHO05D010875 8.0e-08 62.8 39 66.7
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 2.3e-07 61.2 49 63.3
SalBow1G0607 Salvia bowleyana HOM05D005258 ORTHO05D362423 2.3e-07 61.2 81 40.7
Lsat_1_v5_gn_3_115920 Lactuca sativa HOM05D005258 ORTHO05D006525 7.4e-06 56.2 99 42.4


User provided reference genes

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