Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g033710 Solanum pennellii HOM05D007204 ORTHO05D008593 1.4e-75 286.2 147 100.0
PGSC0003DMG400030457 Solanum tuberosum HOM05D007204 ORTHO05D008593 1.8e-70 269.2 147 93.9
Nitab4.5_0007880g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 1.6e-50 203.0 145 73.8
Peaxi162Scf00390g00079 Petunia axillaris HOM05D007204 ORTHO05D008593 2.1e-42 176.0 141 69.5
Nitab4.5_0009741g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 2.3e-41 172.6 172 59.3
Dinv09663 Davidia involucrata HOM05D007204 ORTHO05D008593 4.4e-24 115.2 135 46.7
Potri.001G281500 Populus trichocarpa HOM05D007204 ORTHO05D008593 7.5e-24 114.4 137 48.2
Actinidia32616 Actinidia chinensis HOM05D007204 ORTHO05D008593 1.7e-23 113.2 141 45.4
ECA247G3086 Erigeron canadensis HOM05D007204 ORTHO05D008593 4.8e-23 111.7 138 44.9
Sabra16G0175100 Salix brachista HOM05D007204 ORTHO05D008593 4.8e-23 111.7 135 48.1
TAR623G0341 Trochodendron aralioides HOM05D007204 ORTHO05D008593 6.3e-23 111.3 140 47.1
Cc01_g14730 Coffea canephora HOM05D007204 ORTHO05D008593 8.3e-23 110.9 137 48.2
HanXRQChr08g0229231 Helianthus annuus HOM05D007204 ORTHO05D008593 5.4e-22 108.2 138 45.7
Lsat_1_v5_gn_9_18401 Lactuca sativa HOM05D007204 ORTHO05D008593 9.1e-22 107.5 137 43.8
MSTRG.9779 Avicennia marina HOM05D007204 ORTHO05D008593 2.0e-21 106.3 137 43.8
CiPaw.14G055100 Carya illinoinensis HOM05D007204 ORTHO05D008593 3.5e-21 105.5 137 43.8
Migut.N00766 Erythranthe guttata HOM05D007204 ORTHO05D008593 7.7e-21 104.4 137 46.0
Prupe.6G050500 Prunus persica HOM05D007204 ORTHO05D008593 5.0e-20 101.7 161 39.1
Rhsim13G0065200 Rhododendron simsii HOM05D007204 ORTHO05D008593 1.1e-19 100.5 186 37.1
GSVIVG01024663001 Vitis vinifera HOM05D007204 ORTHO05D008593 3.3e-19 99.0 138 45.7
Nn2g10986 Nelumbo nucifera HOM05D007204 ORTHO05D008593 9.5e-19 97.4 132 42.4
QL01p040026 Quercus lobata HOM05D007204 ORTHO05D008593 9.5e-19 97.4 134 46.3
THA.LOC104800761 Tarenaya hassleriana HOM05D007204 ORTHO05D008593 4.7e-18 95.1 129 41.1
MBI03_g33621_MAGBIO Magnolia biondii HOM05D007204 ORTHO05D008593 6.1e-18 94.7 135 43.0
Ciclev10029273m.g Citrus clementina HOM05D007204 ORTHO05D008593 8.0e-18 94.4 133 42.9
PSO339G1295 Papaver somniferum HOM05D007204 ORTHO05D008593 1.4e-17 93.6 130 46.9
SGA_v2.0_scaffold120G32948 Striga asiatica HOM05D007204 ORTHO05D008593 1.4e-17 93.6 131 42.7
Atru.chr3.4133 Acer truncatum HOM05D007204 ORTHO05D008593 3.0e-17 92.4 132 42.4
PGR102G0940 Punica granatum HOM05D007204 ORTHO05D008593 6.8e-17 91.3 138 39.9
SGA_v2.0_scaffold146G36125 Striga asiatica HOM05D007204 ORTHO05D008593 6.8e-17 91.3 135 41.5
FAN25G1877 Fragaria x ananassa HOM05D007204 ORTHO05D008593 8.9e-17 90.9 152 39.5
Hma1.2p1_0841F.1_g226930 Hydrangea macrophylla HOM05D007204 ORTHO05D008593 1.2e-16 90.5 84 58.3
RcHm_v2.0_Chr5g0071301 Rosa chinensis HOM05D007204 ORTHO05D008593 2.0e-16 89.7 148 40.5
Manes.17G034600 Manihot esculenta HOM05D007204 ORTHO05D008593 2.6e-16 89.4 136 41.9
Eucgr.B03990 Eucalyptus grandis HOM05D007204 ORTHO05D008593 4.4e-16 88.6 132 41.7
Duzib168G0028 Durio zibethinus HOM05D007204 ORTHO05D008593 5.7e-16 88.2 147 38.1
Thecc.09G355900 Theobroma cacao HOM05D007204 ORTHO05D008593 7.5e-16 87.8 150 36.7
TWI31G1133 Tripterygium wilfordii HOM05D007204 ORTHO05D008593 7.5e-16 87.8 138 38.4
PSO801G0770 Papaver somniferum HOM05D007204 ORTHO05D008593 9.8e-16 87.4 130 45.4
Carub.0001s0635 Capsella rubella HOM05D007204 ORTHO05D008593 1.3e-15 87.0 139 38.8
Sed0020276 Sechium edule HOM05D007204 ORTHO05D008593 1.3e-15 87.0 139 38.8
FAN16G2350 Fragaria x ananassa HOM05D007204 ORTHO05D008593 2.8e-15 85.9 152 37.5
CARHR006750 Cardamine hirsuta HOM05D007204 ORTHO05D008593 3.7e-15 85.5 139 38.1
Gohir.D03G142400 Gossypium hirsutum HOM05D007204 ORTHO05D008593 3.7e-15 85.5 135 40.0
FAN11G3207 Fragaria x ananassa HOM05D007204 ORTHO05D008593 8.3e-15 84.3 152 37.5
AL1G17180 Arabidopsis lyrata HOM05D007204 ORTHO05D008593 1.1e-14 84.0 148 35.1
Sc21g0005220 Simmondsia chinensis HOM05D007204 ORTHO05D008593 1.1e-14 84.0 127 40.2
MD11G1063300 Malus domestica HOM05D007204 ORTHO05D008593 1.4e-14 83.6 156 37.2
FvH4_3g39530 Fragaria vesca HOM05D007204 ORTHO05D008593 2.4e-14 82.8 152 36.8
CANSAT54G2573 Cannabis sativa HOM05D007204 ORTHO05D008593 3.1e-14 82.4 96 51.0
VMungo0540G1924 Vigna mungo HOM05D007204 ORTHO05D008593 3.1e-14 82.4 140 40.0
Gorai.003G149500 Gossypium raimondii HOM05D007204 ORTHO05D008593 4.1e-14 82.0 135 38.5
arahy.Tifrunner.gnm1.ann1.IVNQ32 Arachis hypogaea HOM05D007204 ORTHO05D008593 7.0e-14 81.3 152 38.8
CSS0017241 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 1.2e-13 80.5 84 50.0
CSS0041349 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 1.6e-13 80.1 84 50.0
COL.COLO4_11129 Corchorus olitorius HOM05D007204 ORTHO05D008593 1.6e-13 80.1 132 38.6
ClCG03G000270 Citrullus lanatus HOM05D007204 ORTHO05D008593 2.0e-13 79.7 137 41.6
MELO3C026086.2 Cucumis melo HOM05D007204 ORTHO05D008593 2.0e-13 79.7 151 38.4
BcaC05g24670 Brassica carinata HOM05D007204 ORTHO05D008593 2.7e-13 79.3 139 38.8
Psat5g153840 Pisum sativum HOM05D007204 ORTHO05D008593 2.7e-13 79.3 139 38.1
AT1G07060 Arabidopsis thaliana HOM05D007204 ORTHO05D008593 3.5e-13 79.0 140 36.4
C05p05140 Brassica napus HOM05D007204 ORTHO05D008593 3.5e-13 79.0 139 38.8
AUR62009682 Chenopodium quinoa HOM05D007204 ORTHO05D008593 4.5e-13 78.6 131 39.7
BcaNung06767 Brassica carinata HOM05D007204 ORTHO05D008593 7.8e-13 77.8 139 38.1
Phvul.006G073000 Phaseolus vulgaris HOM05D007204 ORTHO05D008593 1.0e-12 77.4 154 37.0
Aa31LG1G8110 Aethionema arabicum HOM05D007204 ORTHO05D008593 1.3e-12 77.0 140 38.6
Lj6g0005890 Lotus japonicus HOM05D007204 ORTHO05D008593 1.3e-12 77.0 134 39.6
CsaV3_1G015330 Cucumis sativus L. HOM05D007204 ORTHO05D008593 1.7e-12 76.6 151 37.1
A10p05600 Brassica napus HOM05D007204 ORTHO05D008593 2.3e-12 76.3 135 40.0
Cfa011760 Carpinus fangiana HOM05D007204 ORTHO05D008593 6.6e-12 74.7 83 51.8
TPR.G32886 Trifolium pratense HOM05D007204 ORTHO05D008593 8.6e-12 74.3 140 38.6
Sp1g05780 Schrenkiella parvula HOM05D007204 ORTHO05D008593 1.5e-11 73.6 140 37.9
Solyc06g082320.4 Solanum lycopersicum HOM05D007204 ORTHO05D008593 2.5e-11 72.8 37 94.6
Oeu034090.2 Olea europaea HOM05D007204 ORTHO05D008593 4.3e-11 72.0 149 37.6
DCAR_012274 Daucus carota HOM05D007204 ORTHO05D008593 1.6e-10 70.1 84 51.2
HPP92_019711 Vanilla planifolia HOM05D000883 ORTHO05D002942 2.1e-10 69.7 136 33.8
arahy.Tifrunner.gnm1.ann1.QCA2Y7 Arachis hypogaea HOM05D007204 ORTHO05D008593 1.8e-09 66.6 166 34.3
BcaC05g24674 Brassica carinata HOM05D007204 ORTHO05D008593 4.0e-09 65.5 139 35.3
BcaNung06763 Brassica carinata HOM05D007204 ORTHO05D008593 5.2e-09 65.1 160 31.9
BolC5t29286H Brassica oleracea HOM05D007204 ORTHO05D008593 8.9e-09 64.3 163 32.5
BraA10t42821Z Brassica rapa HOM05D007204 ORTHO05D008593 8.9e-09 64.3 159 34.0
Aqoxy2G00798 Aquilegia oxysepala HOM05D007204 ORTHO05D008593 2.0e-08 63.2 77 45.5
Os12g0106100 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 2.0e-08 63.2 131 35.9
unitig_94.g28350 Utricularia gibba HOM05D007204 ORTHO05D008593 2.0e-08 63.2 131 34.4
Thhalv10009490m.g Eutrema salsugineum HOM05D007204 ORTHO05D008593 5.8e-08 61.6 99 41.4
Os11g0106800 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 5.8e-08 61.6 142 35.2
AUR62001886 Chenopodium quinoa HOM05D007204 ORTHO05D008593 2.9e-07 59.3 166 30.7
SEGI_02179 Sequoiadendron giganteum HOM05D056589 ORTHO05D008593 2.9e-07 59.3 129 34.9
SalBow2G2431 Salvia bowleyana HOM05D007204 ORTHO05D008593 6.4e-07 58.2 63 49.2
Gohir.A03G026100 Gossypium hirsutum HOM05D007204 ORTHO05D008593 1.1e-06 57.4 84 42.9
FAN21G2638 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.4e-06 57.0 99 37.4
Zm00001eb195020 Zea mays HOM05D007204 ORTHO05D008593 3.2e-06 55.8 131 31.3


User provided reference genes

Program Settings