Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 1.6e-219 765.8 378 100.0
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 5.7e-217 757.3 378 98.9
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 9.0e-215 750.0 378 97.9
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 5.9e-190 667.5 379 87.3
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 1.3e-184 649.8 378 85.2
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 1.4e-183 646.4 378 84.7
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 1.0e-170 603.6 379 78.9
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 9.2e-151 537.3 384 70.6
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 3.9e-141 505.4 372 69.1
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 1.7e-133 479.9 386 65.3
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 6.6e-133 478.0 386 65.3
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 2.8e-131 472.6 380 61.6
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 5.2e-130 468.4 386 62.4
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.3e-128 463.8 361 64.3
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 2.9e-128 462.6 381 61.2
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 1.1e-127 460.7 436 57.3
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 3.2e-127 459.1 352 65.9
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 5.1e-125 451.8 337 67.4
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 1.1e-124 450.7 386 61.4
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 8.1e-123 444.5 370 63.2
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 1.1e-122 444.1 373 62.5
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 1.8e-122 443.4 362 63.3
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 1.8e-122 443.4 376 60.9
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 9.0e-122 441.0 315 70.2
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 2.6e-121 439.5 375 60.0
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 5.8e-121 438.3 366 62.8
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 9.9e-121 437.6 342 65.2
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 9.9e-121 437.6 369 62.6
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 1.7e-120 436.8 368 61.1
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 2.2e-120 436.4 370 63.2
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 8.4e-120 434.5 370 60.5
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 1.4e-119 433.7 372 61.3
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.9e-119 433.3 377 59.7
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 3.2e-119 432.6 327 66.7
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 4.2e-119 432.2 338 64.2
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 7.1e-119 431.4 377 59.2
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 1.6e-118 430.3 373 59.8
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 1.6e-118 430.3 377 59.4
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 7.9e-118 427.9 377 59.2
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 1.3e-117 427.2 352 61.9
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 1.8e-117 426.8 369 61.0
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 2.3e-117 426.4 371 60.1
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 5.1e-117 425.2 376 58.5
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 8.7e-117 424.5 347 62.0
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 1.9e-116 423.3 381 58.3
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 9.6e-116 421.0 338 61.2
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 1.6e-115 420.2 334 63.8
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 1.6e-115 420.2 373 59.5
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 2.8e-115 419.5 360 60.6
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 2.8e-115 419.5 380 57.4
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 6.2e-115 418.3 403 55.6
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.4e-114 417.2 285 70.9
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 3.1e-114 416.0 364 58.5
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 5.3e-114 415.2 354 60.5
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 5.3e-114 415.2 375 60.0
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 6.9e-114 414.8 373 60.3
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 1.2e-113 414.1 349 60.5
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 2.0e-113 413.3 380 56.8
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 2.6e-113 412.9 370 58.9
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 7.6e-113 411.4 360 60.0
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 1.3e-112 410.6 377 57.3
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 6.4e-112 408.3 371 59.0
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 4.2e-111 405.6 375 57.1
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 5.5e-111 405.2 345 62.0
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 7.1e-111 404.8 360 58.6
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 1.3e-109 400.6 370 57.3
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 2.3e-109 399.8 371 57.4
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 5.1e-109 398.7 363 58.1
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 8.7e-109 397.9 379 57.3
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 8.7e-109 397.9 378 57.7
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.5e-108 397.1 327 62.4
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 1.3e-107 394.0 363 56.7
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 1.6e-107 393.7 326 62.6
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 3.7e-107 392.5 314 63.7
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 4.8e-107 392.1 384 56.2
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 8.1e-107 391.3 384 56.8
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 1.4e-106 390.6 314 63.1
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 3.1e-106 389.4 386 54.9
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 3.1e-106 389.4 377 54.9
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 5.3e-106 388.7 318 63.5
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 5.3e-106 388.7 370 54.9
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 1.2e-105 387.5 318 62.9
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 1.5e-105 387.1 314 63.4
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 2.0e-105 386.7 336 61.6
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 3.4e-105 386.0 374 55.1
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 4.5e-105 385.6 317 62.5
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 5.8e-105 385.2 318 63.2
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 1.0e-104 384.4 372 55.1
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 3.8e-104 382.5 318 61.9
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 3.8e-104 382.5 369 56.4
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 3.8e-104 382.5 325 61.2
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 1.9e-103 380.2 320 60.9
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 1.9e-103 380.2 321 61.4
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 2.5e-103 379.8 376 54.8
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.6e-102 377.1 272 69.9
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 1.6e-102 377.1 374 55.1
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.0e-101 374.4 272 69.5
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 1.0e-101 374.4 363 55.4
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 1.3e-101 374.0 318 62.3
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 5.1e-101 372.1 368 54.9
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 3.3e-100 369.4 307 59.9
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 7.4e-100 368.2 291 64.3
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 2.4e-98 363.2 270 67.4
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 5.3e-98 362.1 288 63.5
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 1.2e-97 360.9 291 60.1
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 3.8e-96 355.9 342 55.3
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 3.6e-94 349.4 283 62.5
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 2.3e-93 346.7 321 58.6
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 2.5e-92 343.2 332 55.4
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 2.5e-87 326.6 317 53.3
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 2.5e-87 326.6 284 57.4
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 9.1e-82 308.1 259 62.9
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 1.4e-77 294.3 303 52.1
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 9.7e-76 288.1 288 52.8
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 1.7e-67 260.8 276 47.5
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 3.7e-67 259.6 240 57.1
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 2.4e-66 256.9 286 48.6
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.2e-65 254.6 276 45.3
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 1.7e-64 250.8 266 48.9
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.1e-63 248.1 292 43.2
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 3.2e-63 246.5 275 47.6
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 2.1e-62 243.8 186 65.6
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 1.0e-56 224.9 289 42.6
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.3e-48 197.2 174 58.0
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 1.4e-42 177.9 167 56.9
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 1.1e-34 151.8 144 54.9
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 8.6e-32 142.1 131 55.7
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 8.9e-29 132.1 88 72.7
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 8.6e-24 115.5 169 43.2
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 6.2e-22 109.4 97 60.8
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 9.9e-20 102.1 113 53.1
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 9.9e-20 102.1 113 53.1
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 3.2e-18 97.1 62 77.4
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 3.0e-16 90.5 86 53.5
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 1.4e-13 81.6 79 58.2
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 4.4e-12 76.6 94 40.4
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 8.4e-11 72.4 70 54.3
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 1.4e-10 71.6 50 68.0
AagrBONN_evm.TU.Sc2ySwM_344.936 Anthoceros agrestis HOM05D006163 ORTHO05D007625 3.6e-06 57.0 180 26.7
SEGI_35827 Sequoiadendron giganteum HOM05D000559 ORTHO05D000596 3.6e-06 57.0 282 23.4
ECA232G1213 Erigeron canadensis HOM05D000559 ORTHO05D000596 4.8e-06 56.6 95 33.7


User provided reference genes

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