Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 5.1e-87 324.3 158 100.0
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 9.6e-86 320.1 158 98.1
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 2.8e-85 318.5 158 97.5
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.4e-76 288.9 158 87.3
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.5e-73 278.9 158 85.4
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 8.5e-66 253.8 160 80.0
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 1.3e-53 213.4 160 68.8
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 6.3e-53 211.1 178 63.5
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 1.8e-52 209.5 158 65.2
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 1.6e-51 206.5 158 64.6
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 4.5e-51 204.9 159 64.8
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.5e-49 199.9 158 59.5
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 1.9e-49 199.5 162 64.2
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 1.9e-49 199.5 158 62.7
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.9e-49 199.5 153 61.4
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 2.1e-48 196.1 144 69.4
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 4.7e-48 194.9 135 69.6
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 2.3e-47 192.6 160 62.5
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 5.2e-47 191.4 158 60.1
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 8.8e-47 190.7 158 60.1
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 8.8e-47 190.7 158 59.5
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 1.5e-46 189.9 158 61.4
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 2.0e-46 189.5 155 60.6
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 2.6e-46 189.1 156 60.9
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 4.4e-46 188.3 158 60.8
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 4.4e-46 188.3 150 62.0
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 9.8e-46 187.2 134 65.7
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 9.8e-46 187.2 158 57.6
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 2.8e-45 185.7 155 59.4
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 3.7e-45 185.3 158 60.1
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 4.8e-45 184.9 155 57.4
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 6.3e-45 184.5 160 59.4
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 6.3e-45 184.5 160 59.4
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 8.3e-45 184.1 118 71.2
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.1e-44 183.7 159 58.5
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.4e-44 183.3 148 58.8
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 1.8e-44 183.0 160 60.6
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 2.4e-44 182.6 159 58.5
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 2.4e-44 182.6 158 58.2
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 3.1e-44 182.2 158 58.9
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 5.4e-44 181.4 160 56.9
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 1.2e-43 180.3 158 57.6
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.2e-43 180.3 158 59.5
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 7.7e-43 177.6 140 62.9
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 7.7e-43 177.6 137 63.5
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 1.0e-42 177.2 136 63.2
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 1.0e-42 177.2 160 56.9
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 1.0e-42 177.2 162 56.2
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 1.3e-42 176.8 161 57.1
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 1.3e-42 176.8 134 61.9
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 1.7e-42 176.4 158 58.2
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 1.7e-42 176.4 151 58.3
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 2.2e-42 176.0 164 54.3
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 2.2e-42 176.0 164 54.3
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 2.2e-42 176.0 164 54.3
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.9e-42 175.6 140 60.7
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 3.8e-42 175.3 158 57.0
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 3.8e-42 175.3 147 57.8
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 5.0e-42 174.9 136 62.5
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 5.0e-42 174.9 152 58.6
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 5.0e-42 174.9 157 59.9
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 8.5e-42 174.1 161 59.6
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 8.5e-42 174.1 136 63.2
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 1.5e-41 173.3 158 58.2
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 3.2e-41 172.2 161 59.0
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 4.2e-41 171.8 163 55.8
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 4.2e-41 171.8 158 55.7
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 4.2e-41 171.8 158 51.9
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 7.2e-41 171.0 155 54.2
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 9.5e-41 170.6 159 57.2
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 1.2e-40 170.2 135 62.2
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 1.2e-40 170.2 155 54.2
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 1.6e-40 169.9 163 55.2
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 1.6e-40 169.9 160 55.0
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 2.7e-40 169.1 147 61.2
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 3.6e-40 168.7 158 50.6
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 4.7e-40 168.3 114 71.1
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 4.7e-40 168.3 162 55.6
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 6.1e-40 167.9 141 58.9
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 1.0e-39 167.2 133 60.2
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 2.3e-39 166.0 146 55.5
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 3.0e-39 165.6 158 58.2
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 4.0e-39 165.2 158 51.9
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 5.2e-39 164.9 151 57.6
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 6.8e-39 164.5 161 55.3
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 6.8e-39 164.5 142 57.7
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 1.2e-38 163.7 139 57.6
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.5e-38 163.3 160 53.1
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 7.5e-38 161.0 92 77.2
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 7.5e-38 161.0 83 83.1
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 1.3e-37 160.2 81 87.7
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 1.3e-37 160.2 158 52.5
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 1.3e-37 160.2 158 51.9
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 1.7e-37 159.8 104 75.0
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 2.8e-37 159.1 138 57.2
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 3.7e-37 158.7 92 73.9
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 3.7e-37 158.7 154 53.9
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 4.9e-37 158.3 103 66.0
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 6.3e-37 157.9 153 55.6
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 8.3e-37 157.5 136 57.4
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 8.3e-37 157.5 166 50.0
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 1.1e-36 157.1 154 50.6
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 1.8e-36 156.4 134 57.5
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 2.4e-36 156.0 161 51.6
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 5.4e-36 154.8 130 56.9
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 5.4e-36 154.8 90 72.2
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 5.4e-36 154.8 159 49.7
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.2e-35 153.7 141 55.3
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 3.5e-35 152.1 96 66.7
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 1.3e-34 150.2 132 53.8
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 1.9e-33 146.4 162 48.8
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 1.9e-33 146.4 157 47.1
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 9.5e-33 144.1 170 50.0
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 3.6e-32 142.1 134 56.7
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 3.6e-32 142.1 78 76.9
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 2.6e-30 136.0 105 60.0
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 1.3e-29 133.7 135 50.4
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 1.4e-28 130.2 81 69.1
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 5.9e-27 124.8 114 55.3
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 4.3e-25 118.6 91 60.4
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 6.2e-24 114.8 108 53.7
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 1.0e-23 114.0 82 64.6
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 1.8e-23 113.2 134 47.0
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 2.3e-23 112.8 112 50.9
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 3.1e-23 112.5 85 61.2
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 7.5e-22 107.8 54 77.8
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 1.7e-21 106.7 159 42.1
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 2.9e-21 105.9 99 53.5
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 2.7e-19 99.4 90 47.8
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 1.7e-18 96.7 80 58.8
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 1.7e-18 96.7 159 39.6
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 1.1e-17 94.0 85 52.9
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 7.3e-17 91.3 79 50.6
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 1.4e-15 87.0 65 63.1
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 2.0e-14 83.2 43 81.4
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 4.9e-13 78.6 109 36.7
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 2.7e-11 72.8 82 47.6
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 3.0e-10 69.3 115 35.7
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 2.5e-09 66.2 43 60.5
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 4.3e-09 65.5 42 61.9
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 7.3e-09 64.7 41 63.4
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 2.8e-08 62.8 49 55.1


User provided reference genes

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