Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g032410 Solanum pennellii HOM05D006284 ORTHO05D007793 3.5e-76 288.1 138 100.0
Solyc06g075990.4 Solanum lycopersicum HOM05D006284 ORTHO05D007793 6.7e-75 283.9 137 99.3
PGSC0003DMG400030315 Solanum tuberosum HOM05D006284 ORTHO05D007793 1.3e-73 279.6 138 96.4
CAN.G394.47 Capsicum annuum HOM05D006284 ORTHO05D007793 4.1e-72 274.6 138 94.2
Nitab4.5_0001304g0050 Nicotiana tabacum HOM05D006284 ORTHO05D007793 1.0e-67 260.0 135 89.6
Nitab4.5_0001838g0030 Nicotiana tabacum HOM05D006284 ORTHO05D007793 3.0e-67 258.5 135 88.9
Peaxi162Scf00679g00212 Petunia axillaris HOM05D006284 ORTHO05D007793 2.2e-62 242.3 137 82.5
QL01p032751 Quercus lobata HOM05D006284 ORTHO05D007793 1.4e-59 233.0 135 80.0
CiPaw.13G097000 Carya illinoinensis HOM05D006284 ORTHO05D007793 2.8e-57 225.3 135 77.8
FAN11G1150 Fragaria x ananassa HOM05D006284 ORTHO05D007793 2.8e-57 225.3 135 75.6
FAN21G0749 Fragaria x ananassa HOM05D006284 ORTHO05D007793 2.8e-57 225.3 135 75.6
Lalb_Chr01g0003741 Lupinus albus HOM05D006284 ORTHO05D007793 1.1e-56 223.4 135 77.8
Atru.chr3.3846 Acer truncatum HOM05D006284 ORTHO05D007793 1.8e-56 222.6 135 77.8
FAN16G2200 Fragaria x ananassa HOM05D006284 ORTHO05D007793 2.4e-56 222.2 135 74.8
Haze_24061 Corylus avellana HOM05D006284 ORTHO05D007793 3.1e-56 221.9 135 77.0
EL10Ac7g15985 Beta vulgaris HOM05D006284 ORTHO05D007793 1.2e-55 219.9 135 74.1
Ca_19180_v3 Cicer arietinum L. HOM05D006284 ORTHO05D007793 1.2e-55 219.9 135 73.3
Ca_31183_v3 Cicer arietinum L. HOM05D006284 ORTHO05D007793 1.2e-55 219.9 135 73.3
RcHm_v2.0_Chr5g0063801 Rosa chinensis HOM05D006284 ORTHO05D007793 1.2e-55 219.9 135 75.6
MSTRG.15272 Avicennia marina HOM05D006284 ORTHO05D007793 1.5e-55 219.5 136 75.0
Prupe.6G080800 Prunus persica HOM05D006284 ORTHO05D007793 1.5e-55 219.5 133 74.4
Aqoxy4G02964 Aquilegia oxysepala HOM05D006284 ORTHO05D007793 2.6e-55 218.8 134 73.1
GSVIVG01025000001 Vitis vinifera HOM05D006284 ORTHO05D007793 2.6e-55 218.8 135 77.8
Rhsim01G0226200 Rhododendron simsii HOM05D006284 ORTHO05D007793 5.9e-55 217.6 135 74.8
Dinv03613 Davidia involucrata HOM05D006284 ORTHO05D007793 1.0e-54 216.9 135 74.8
Migut.L00518 Erythranthe guttata HOM05D006284 ORTHO05D007793 1.0e-54 216.9 136 73.5
Thhalv10009069m.g Eutrema salsugineum HOM05D006284 ORTHO05D007793 1.0e-54 216.9 137 74.5
HanXRQChr15g0493271 Helianthus annuus HOM05D006284 ORTHO05D007793 1.0e-54 216.9 137 73.7
Potri.001G237500 Populus trichocarpa HOM05D006284 ORTHO05D007793 1.7e-54 216.1 135 72.6
BcaC07g42493 Brassica carinata HOM05D006284 ORTHO05D007793 2.2e-54 215.7 137 74.5
Medtr4g063500 Medicago truncatula HOM05D006284 ORTHO05D007793 2.9e-54 215.3 136 72.1
Oeu056746.1 Olea europaea HOM05D006284 ORTHO05D007793 2.9e-54 215.3 137 72.3
Aa31sc281G30 Aethionema arabicum HOM05D006284 ORTHO05D007793 3.8e-54 214.9 137 72.3
AL1G17850 Arabidopsis lyrata HOM05D006284 ORTHO05D007793 3.8e-54 214.9 137 73.7
arahy.Tifrunner.gnm1.ann1.W3SBYC Arachis hypogaea HOM05D006284 ORTHO05D007793 3.8e-54 214.9 136 73.5
Carub.0001s0699 Capsella rubella HOM05D006284 ORTHO05D007793 3.8e-54 214.9 137 73.7
vmacro14530 Vaccinium macrocarpon HOM05D006284 ORTHO05D007793 5.0e-54 214.5 135 73.3
BcaC07g41981 Brassica carinata HOM05D006284 ORTHO05D007793 6.5e-54 214.2 137 74.5
BcaC07g42491 Brassica carinata HOM05D006284 ORTHO05D007793 6.5e-54 214.2 137 74.5
C08p50410 Brassica napus HOM05D006284 ORTHO05D007793 6.5e-54 214.2 137 74.5
BolC8t52569H Brassica oleracea HOM05D006284 ORTHO05D007793 6.5e-54 214.2 137 74.5
AT1G07645 Arabidopsis thaliana HOM05D006284 ORTHO05D007793 8.5e-54 213.8 137 73.7
A09p66230 Brassica napus HOM05D006284 ORTHO05D007793 8.5e-54 213.8 137 74.5
TAR623G0100 Trochodendron aralioides HOM05D006284 ORTHO05D007793 8.5e-54 213.8 134 75.4
BraA06t23686Z Brassica rapa HOM05D006284 ORTHO05D007793 1.1e-53 213.4 139 72.7
AUR62009602 Chenopodium quinoa HOM05D006284 ORTHO05D007793 1.1e-53 213.4 135 72.6
Oeu041449.2 Olea europaea HOM05D006284 ORTHO05D007793 1.1e-53 213.4 137 72.3
MD11G1144900 Malus domestica HOM05D006284 ORTHO05D007793 1.9e-53 212.6 135 72.6
Sabra16G0143200 Salix brachista HOM05D006284 ORTHO05D007793 1.9e-53 212.6 135 72.6
Sp1g06380 Schrenkiella parvula HOM05D006284 ORTHO05D007793 1.9e-53 212.6 137 73.7
SalBow5G5166 Salvia bowleyana HOM05D006284 ORTHO05D007793 2.5e-53 212.2 138 73.9
Sc06g0008270 Simmondsia chinensis HOM05D006284 ORTHO05D007793 2.5e-53 212.2 129 74.4
arahy.Tifrunner.gnm1.ann1.6H51DS Arachis hypogaea HOM05D006284 ORTHO05D007793 3.2e-53 211.8 136 72.8
A06p04820 Brassica napus HOM05D006284 ORTHO05D007793 3.2e-53 211.8 138 72.5
BraA09t41961Z Brassica rapa HOM05D006284 ORTHO05D007793 3.2e-53 211.8 137 73.7
Hma1.2p1_1897F.1_g306861 Hydrangea macrophylla HOM05D006284 ORTHO05D007793 4.2e-53 211.5 134 73.1
VMungo1127G1430 Vigna mungo HOM05D006284 ORTHO05D007793 4.2e-53 211.5 136 70.6
Lj3g0026697 Lotus japonicus HOM05D006284 ORTHO05D007793 5.5e-53 211.1 136 72.8
Sed0023805 Sechium edule HOM05D006284 ORTHO05D007793 5.5e-53 211.1 135 72.6
DCAR_015613 Daucus carota HOM05D006284 ORTHO05D007793 7.2e-53 210.7 134 72.4
ClCG02G020310 Citrullus lanatus HOM05D006284 ORTHO05D007793 9.4e-53 210.3 135 71.9
Phvul.011G065500 Phaseolus vulgaris HOM05D006284 ORTHO05D007793 9.4e-53 210.3 136 71.3
C05p05670 Brassica napus HOM05D006284 ORTHO05D007793 1.2e-52 209.9 138 72.5
BolC5t29337H Brassica oleracea HOM05D006284 ORTHO05D007793 1.2e-52 209.9 138 72.5
Thecc.09G324900 Theobroma cacao HOM05D006284 ORTHO05D007793 1.2e-52 209.9 136 72.8
CANSAT54G2008 Cannabis sativa HOM05D006284 ORTHO05D007793 1.6e-52 209.5 138 70.3
ECA247G3393 Erigeron canadensis HOM05D006284 ORTHO05D007793 1.6e-52 209.5 136 72.1
Duzib168G1259 Durio zibethinus HOM05D006284 ORTHO05D007793 2.1e-52 209.1 136 73.5
Psat7g217680 Pisum sativum HOM05D006284 ORTHO05D007793 2.1e-52 209.1 135 69.6
Lsat_1_v5_gn_5_183840 Lactuca sativa HOM05D006284 ORTHO05D007793 2.7e-52 208.8 137 72.3
PSO339G4936 Papaver somniferum HOM05D006284 ORTHO05D007793 2.7e-52 208.8 137 71.5
Cpa.g.sc190.6 Carica papaya HOM05D006284 ORTHO05D007793 3.6e-52 208.4 134 73.9
PGR102G0171 Punica granatum HOM05D006284 ORTHO05D007793 3.6e-52 208.4 136 69.9
COL.COLO4_18479 Corchorus olitorius HOM05D006284 ORTHO05D007793 4.7e-52 208.0 136 72.1
Glyma.12G064500 Glycine max HOM05D006284 ORTHO05D007793 4.7e-52 208.0 135 71.1
Gohir.A05G097100 Gossypium hirsutum HOM05D006284 ORTHO05D007793 4.7e-52 208.0 138 71.7
AUR62001816 Chenopodium quinoa HOM05D006284 ORTHO05D007793 6.1e-52 207.6 131 72.5
Migut.L00567 Erythranthe guttata HOM05D006284 ORTHO05D007793 1.0e-51 206.8 127 74.8
Gorai.009G100800 Gossypium raimondii HOM05D006284 ORTHO05D007793 1.4e-51 206.5 138 71.0
Actinidia33860 Actinidia chinensis HOM05D006284 ORTHO05D007793 1.8e-51 206.1 134 72.4
CARHR007450 Cardamine hirsuta HOM05D006284 ORTHO05D007793 1.8e-51 206.1 135 70.4
BcaC07g42490 Brassica carinata HOM05D006284 ORTHO05D007793 2.3e-51 205.7 138 73.2
Os03g0277500 Oryza sativa ssp. japonica HOM05D006284 ORTHO05D007793 3.0e-51 205.3 134 69.4
MELO3C013690.2 Cucumis melo HOM05D006284 ORTHO05D007793 5.2e-51 204.5 135 68.9
Manes.11G132300 Manihot esculenta HOM05D006284 ORTHO05D007793 6.7e-51 204.1 133 69.2
Eucgr.B02382 Eucalyptus grandis HOM05D006284 ORTHO05D007793 1.1e-50 203.4 133 70.7
PSO384G0339 Papaver somniferum HOM05D006284 ORTHO05D007793 1.1e-50 203.4 137 70.1
CsaV3_6G017010 Cucumis sativus L. HOM05D006284 ORTHO05D007793 9.7e-50 200.3 135 67.4
Lsat_1_v5_gn_9_22581 Lactuca sativa HOM05D006284 ORTHO05D007793 1.7e-49 199.5 136 69.1
THA.LOC104800652 Tarenaya hassleriana HOM05D006284 ORTHO05D007793 1.4e-48 196.4 135 70.4
Gohir.D05G097250 Gossypium hirsutum HOM05D006284 ORTHO05D007793 4.1e-48 194.9 132 68.9
SGA_v2.0_scaffold606G53170 Striga asiatica HOM05D006284 ORTHO05D007793 5.9e-47 191.0 133 69.9
SHI00991 Sapria himalayana HOM05D006284 ORTHO05D007793 1.1e-45 186.8 136 65.4
TWI79G0071 Tripterygium wilfordii HOM05D006284 ORTHO05D007793 9.4e-45 183.7 136 68.4
Zm00001eb012550 Zea mays HOM05D006284 ORTHO05D007793 3.0e-43 178.7 133 61.7
Ciclev10029580m.g Citrus clementina HOM05D006284 ORTHO05D007793 2.8e-41 172.2 114 71.9
Gohir.A07G096400 Gossypium hirsutum HOM05D006284 ORTHO05D007793 1.6e-39 166.4 157 56.1
SMO165G0091 Selaginella moellendorffii HOM05D006284 ORTHO05D007793 4.5e-39 164.9 129 58.9
FvH4_3g35580 Fragaria vesca HOM05D006284 ORTHO05D007793 5.0e-38 161.4 135 61.5
MBI14_g11686_MAGBIO Magnolia biondii HOM05D006284 ORTHO05D007793 5.5e-37 157.9 133 59.4
Mapoly0004s0146 Marchantia polymorpha HOM05D006284 ORTHO05D007793 1.6e-36 156.4 130 57.7
Gorai.001G108700 Gossypium raimondii HOM05D006284 ORTHO05D007793 6.1e-36 154.5 131 61.8
Oeu033642.1 Olea europaea HOM05D006284 ORTHO05D007793 1.8e-35 152.9 101 67.3
Lj2A1058T40 Lonicera japonica HOM05D006284 ORTHO05D007793 3.0e-35 152.1 97 72.2
Oeu056758.1 Olea europaea HOM05D006284 ORTHO05D007793 8.8e-35 150.6 96 70.8
Gohir.D07G100800 Gossypium hirsutum HOM05D006284 ORTHO05D007793 1.5e-34 149.8 157 53.5
TPR.G10205 Trifolium pratense HOM05D006284 ORTHO05D007793 9.8e-34 147.1 101 69.3
CSS0000036 Camellia sinensis var. sinensis HOM05D006284 ORTHO05D007793 3.1e-32 142.1 135 56.3
DCAR_018897 Daucus carota HOM05D006284 ORTHO05D007793 1.2e-31 140.2 94 66.0
FAN11G3292 Fragaria x ananassa HOM05D006284 ORTHO05D007793 3.5e-31 138.7 135 55.6
Oeu056739.1 Olea europaea HOM05D006284 ORTHO05D007793 8.6e-30 134.0 137 52.6
Oeu056743.1 Olea europaea HOM05D006284 ORTHO05D007793 8.6e-30 134.0 97 61.9
Peaxi162Scf00406g00314 Petunia axillaris HOM05D006284 ORTHO05D007793 4.9e-25 118.2 135 50.4
SEGI_15500 Sequoiadendron giganteum HOM05D006284 ORTHO05D007793 8.6e-22 107.5 101 57.4
AagrBONN_evm.TU.Sc2ySwM_117.384 Anthoceros agrestis HOM05D006284 ORTHO05D007793 2.1e-20 102.8 131 38.2
AagrBONN_evm.TU.Sc2ySwM_344.4820 Anthoceros agrestis HOM05D006284 ORTHO05D007793 1.8e-19 99.8 95 50.5
FvH4_3g35610 Fragaria vesca HOM05D006284 ORTHO05D007793 7.5e-18 94.4 135 41.5
AagrBONN_evm.TU.Sc2ySwM_344.4822 Anthoceros agrestis HOM05D018382 ORTHO05D001873 2.2e-17 92.8 117 41.0
MD07G1053700 Malus domestica HOM05D006284 ORTHO05D007793 2.2e-17 92.8 62 66.1
CANSAT21G1079 Cannabis sativa HOM05D002411 ORTHO05D002564 2.9e-17 92.4 60 68.3
Pp3c19_1590 Physcomitrium patens HOM05D006284 ORTHO05D007793 1.4e-16 90.1 130 38.5
MD14G1025700 Malus domestica HOM05D006284 ORTHO05D007793 2.4e-16 89.4 62 64.5
Cc01_g12610 Coffea canephora HOM05D006284 ORTHO05D007793 4.7e-12 75.1 44 77.3
TPR.G10968 Trifolium pratense HOM05D006284 ORTHO05D007793 8.9e-11 70.9 40 77.5
Ah.08g219180 Amaranthus hybridus HOM05D006284 ORTHO05D007793 1.1e-08 63.9 42 76.2
ATR0559G308 Amborella trichopoda HOM05D006284 ORTHO05D007793 7.1e-08 61.2 37 78.4
SEGI_40910 Sequoiadendron giganteum HOM05D006284 ORTHO05D007793 3.9e-06 55.5 46 56.5


User provided reference genes

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