Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g031250 Solanum pennellii HOM05D006963 ORTHO05D008783 0.0e+00 2398.2 1238 100.0
Solyc06g074810.3 Solanum lycopersicum HOM05D006963 ORTHO05D008783 0.0e+00 2364.3 1238 98.6
PGSC0003DMG400007133 Solanum tuberosum HOM05D006963 ORTHO05D008783 0.0e+00 2258.8 1246 94.1
Nitab4.5_0003155g0020 Nicotiana tabacum HOM05D006963 ORTHO05D008783 0.0e+00 1988.4 1292 82.0
Nitab4.5_0001163g0050 Nicotiana tabacum HOM05D006963 ORTHO05D008783 0.0e+00 1847.8 1298 75.7
CAN.G1432.10 Capsicum annuum HOM05D006963 ORTHO05D008783 0.0e+00 1799.3 1173 81.6
Peaxi162Scf00114g00812 Petunia axillaris HOM05D006963 ORTHO05D008783 0.0e+00 1741.1 1243 74.6
Cc01_g10290 Coffea canephora HOM05D006963 ORTHO05D008783 0.0e+00 1320.4 1259 57.9
CiPaw.13G122900 Carya illinoinensis HOM05D006963 ORTHO05D008783 0.0e+00 1230.3 1239 57.0
vmacro14391 Vaccinium macrocarpon HOM05D006963 ORTHO05D008783 0.0e+00 1219.9 1240 55.9
Thecc.09G298600 Theobroma cacao HOM05D006963 ORTHO05D008783 0.0e+00 1219.1 1248 55.4
QL01p015018 Quercus lobata HOM05D006963 ORTHO05D008783 0.0e+00 1213.4 1192 57.1
Atru.chr3.3517 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1211.1 1235 55.8
Atru.chr3.3511 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1210.3 1235 55.8
Cfa010289 Carpinus fangiana HOM05D006963 ORTHO05D008783 0.0e+00 1208.4 1253 55.3
Manes.04G012900 Manihot esculenta HOM05D006963 ORTHO05D008783 0.0e+00 1206.8 1249 54.9
Prupe.6G112700 Prunus persica HOM05D006963 ORTHO05D008783 0.0e+00 1203.0 1184 57.0
RcHm_v2.0_Chr5g0056861 Rosa chinensis HOM05D006963 ORTHO05D008783 0.0e+00 1201.8 1243 54.6
MD03G1129000 Malus domestica HOM05D006963 ORTHO05D008783 0.0e+00 1201.4 1250 54.9
Rhsim01G0210700 Rhododendron simsii HOM05D006963 ORTHO05D008783 0.0e+00 1199.5 1238 56.5
Gorai.013G259300 Gossypium raimondii HOM05D006963 ORTHO05D008783 0.0e+00 1197.2 1257 53.7
FvH4_3g30640 Fragaria vesca HOM05D006963 ORTHO05D008783 0.0e+00 1196.8 1192 56.2
FAN25G3586 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1195.6 1315 52.8
MSTRG.18703 Avicennia marina HOM05D006963 ORTHO05D008783 0.0e+00 1193.7 1188 55.6
Haze_23703 Corylus avellana HOM05D006963 ORTHO05D008783 0.0e+00 1187.6 1247 55.1
Gohir.A13G223800 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1187.6 1258 53.7
FAN21G1782 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1186.8 1256 54.1
Ciclev10027698m.g Citrus clementina HOM05D006963 ORTHO05D008783 0.0e+00 1178.7 1238 54.8
Gohir.D13G228600 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1174.8 1258 53.3
FAN11G1352 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1172.1 1307 52.1
Potri.009G005300 Populus trichocarpa HOM05D006963 ORTHO05D008783 0.0e+00 1168.7 1249 55.0
FAN16G1993 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1166.0 1180 55.3
Duzib168G1517 Durio zibethinus HOM05D006963 ORTHO05D008783 0.0e+00 1161.4 1254 53.5
CANSAT64G0534 Cannabis sativa HOM05D006963 ORTHO05D008783 0.0e+00 1160.6 1266 52.5
CSS0000606 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 0.0e+00 1159.1 1087 60.0
DCAR_018766 Daucus carota HOM05D006963 ORTHO05D008783 0.0e+00 1155.2 1245 54.5
Glyma.13G322000 Glycine max HOM05D006963 ORTHO05D008783 0.0e+00 1154.4 1191 55.5
CsaV3_6G014380 Cucumis sativus L. HOM05D006963 ORTHO05D008783 0.0e+00 1143.6 1250 52.6
MELO3C026954.2 Cucumis melo HOM05D006963 ORTHO05D008783 0.0e+00 1139.0 1256 53.8
arahy.Tifrunner.gnm1.ann1.10EEU4 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1136.7 1256 53.3
Medtr2g084285 Medicago truncatula HOM05D006963 ORTHO05D008783 0.0e+00 1131.7 1192 54.2
arahy.Tifrunner.gnm1.ann1.5C5N68 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1131.3 1250 53.4
Sed0000311 Sechium edule HOM05D006963 ORTHO05D008783 0.0e+00 1127.5 1255 52.8
Lj3g0023334 Lotus japonicus HOM05D006963 ORTHO05D008783 0.0e+00 1127.1 1188 54.4
Lalb_Chr24g0394941 Lupinus albus HOM05D006963 ORTHO05D008783 0.0e+00 1125.2 1192 54.7
Ca_01706_v3 Cicer arietinum L. HOM05D006963 ORTHO05D008783 0.0e+00 1124.4 1183 54.3
Phvul.005G130400 Phaseolus vulgaris HOM05D006963 ORTHO05D008783 0.0e+00 1124.4 1187 54.3
Sabra09G0002400 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1109.7 1246 52.7
Psat5g253040 Pisum sativum HOM05D006963 ORTHO05D008783 0.0e+00 1109.4 1186 53.0
VMungo1080G0719 Vigna mungo HOM05D006963 ORTHO05D008783 0.0e+00 1097.8 1191 53.3
ClCG02G021610 Citrullus lanatus HOM05D006963 ORTHO05D008783 0.0e+00 1092.4 1314 50.2
COL.COLO4_19194 Corchorus olitorius HOM05D006963 ORTHO05D008783 0.0e+00 1083.6 1168 53.0
Sabra04G0147300 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1078.9 1254 51.7
Migut.D02292 Erythranthe guttata HOM05D006963 ORTHO05D008783 0.0e+00 1078.2 1225 52.7
TWI79G0599 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 0.0e+00 1076.6 1251 50.7
TPR.G21046 Trifolium pratense HOM05D006963 ORTHO05D008783 8.5e-312 1074.3 1214 51.6
Aqoxy1G01103 Aquilegia oxysepala HOM05D006963 ORTHO05D008783 8.5e-312 1073.5 1246 50.6
TAR369G1146 Trochodendron aralioides HOM05D006963 ORTHO05D008783 1.0e-310 1070.5 1266 51.5
ECA248G2820 Erigeron canadensis HOM05D006963 ORTHO05D008783 7.8e-308 1060.8 1173 53.0
Lj2A1007T38 Lonicera japonica HOM05D006963 ORTHO05D008783 3.9e-307 1058.5 1023 59.1
EL10Ac9g22623 Beta vulgaris HOM05D006963 ORTHO05D008783 2.1e-305 1052.7 1270 51.0
PSO063G0444 Papaver somniferum HOM05D006963 ORTHO05D008783 9.9e-303 1043.9 1259 50.2
PSO339G1013 Papaver somniferum HOM05D006963 ORTHO05D008783 1.7e-302 1043.1 1249 50.2
HanXRQChr11g0346501 Helianthus annuus HOM05D006963 ORTHO05D008783 1.1e-301 1040.4 1232 50.9
Eucgr.J00389 Eucalyptus grandis HOM05D006963 ORTHO05D008783 6.0e-300 1034.6 1185 50.5
PGR119G1224 Punica granatum HOM05D006963 ORTHO05D008783 7.8e-300 1034.2 1233 51.3
Aa31LG5G7960 Aethionema arabicum HOM05D006963 ORTHO05D008783 1.0e-299 1033.9 1240 48.9
MBI13_g24960_MAGBIO Magnolia biondii HOM05D006963 ORTHO05D008783 4.3e-298 1028.5 1253 49.7
Lsat_1_v5_gn_1_64681 Lactuca sativa HOM05D006963 ORTHO05D008783 2.8e-297 1025.8 1186 50.7
AL4G21950 Arabidopsis lyrata HOM05D006963 ORTHO05D008783 4.6e-292 1008.4 1249 48.7
Sc06g0010790 Simmondsia chinensis HOM05D006963 ORTHO05D008783 2.5e-290 1002.7 1192 49.2
SGA_v2.0_scaffold27G11571 Striga asiatica HOM05D006963 ORTHO05D008783 1.3e-289 1000.3 1229 48.2
GSVIVG01031463001 Vitis vinifera HOM05D006963 ORTHO05D008783 2.1e-284 983.0 1252 47.7
Hund08356 Selenicereus undatus HOM05D006963 ORTHO05D008783 1.0e-283 980.7 1261 49.2
Dinv16225 Davidia involucrata HOM05D006963 ORTHO05D008783 1.6e-276 956.8 843 64.4
Ah.01g003350 Amaranthus hybridus HOM05D006963 ORTHO05D008783 4.3e-274 948.7 1201 47.7
CARHR121070 Cardamine hirsuta HOM05D006963 ORTHO05D008783 7.9e-260 901.4 1067 49.6
AUR62014974 Chenopodium quinoa HOM05D006963 ORTHO05D008783 6.7e-259 898.3 1113 48.2
AUR62029159 Chenopodium quinoa HOM05D006963 ORTHO05D008783 3.8e-254 882.5 1045 49.7
ATR0329G003 Amborella trichopoda HOM05D006963 ORTHO05D008783 4.5e-247 859.0 1301 42.7
Cpa.g.sc1.5 Carica papaya HOM05D006963 ORTHO05D008783 4.5e-247 859.0 1257 45.3
Oeu008360.1 Olea europaea HOM05D006963 ORTHO05D008783 4.2e-245 852.4 1058 47.7
Glyma.12G178700 Glycine max HOM05D006963 ORTHO05D008783 9.4e-237 824.7 733 61.8
Os02g0823800 Oryza sativa ssp. japonica HOM05D006963 ORTHO05D008783 1.0e-227 794.7 1185 42.7
Zm00001eb190880 Zea mays HOM05D006963 ORTHO05D008783 4.3e-221 772.7 1235 41.9
TWI79G0699 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 1.6e-212 744.2 809 54.0
SEGI_09379 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 1.1e-203 714.9 1212 41.0
HPP92_025769 Vanilla planifolia HOM05D006963 ORTHO05D008783 8.4e-193 678.7 978 42.0
Cc00_g22940 Coffea canephora HOM05D006963 ORTHO05D008783 1.4e-179 634.8 611 54.8
unitig_899.g15359 Utricularia gibba HOM05D006963 ORTHO05D008783 6.7e-174 615.9 1180 37.3
Mapoly0011s0199 Marchantia polymorpha HOM05D006963 ORTHO05D008783 2.3e-158 564.3 1214 34.8
Pp3c19_6480 Physcomitrium patens HOM05D006963 ORTHO05D008783 2.0e-141 508.1 1224 33.5
AagrBONN_evm.TU.Sc2ySwM_344.4789 Anthoceros agrestis HOM05D006963 ORTHO05D008783 2.8e-140 504.2 1161 35.5
CDE04G1589 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 1.2e-127 462.2 636 46.4
Dinv16223 Davidia involucrata HOM05D006963 ORTHO05D008783 4.3e-104 384.0 393 52.9
Actinidia20425 Actinidia chinensis HOM05D006963 ORTHO05D008783 3.1e-86 324.7 444 48.9
Glyma.12G178600 Glycine max HOM05D006963 ORTHO05D008783 7.6e-85 320.1 398 45.7
SEGI_31087 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 2.8e-79 301.6 510 37.3
CBR_g8254 Chara braunii HOM05D006963 ORTHO05D008783 3.0e-73 281.6 1274 28.2
CDE04G0208 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 5.6e-64 250.8 399 39.3
CAN.G1432.11 Capsicum annuum HOM05D006963 ORTHO05D008783 7.7e-37 160.6 77 94.8
Oeu008361.1 Olea europaea HOM05D006963 ORTHO05D008783 4.2e-35 154.8 174 53.4
Dinv29380 Davidia involucrata HOM05D006963 ORTHO05D008783 3.6e-34 151.8 188 46.3
Nn2g13854 Nelumbo nucifera HOM05D006963 ORTHO05D008783 1.1e-30 140.2 201 46.3
CSS0014134 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 2.4e-30 139.0 194 46.9
arahy.Tifrunner.gnm1.ann1.WJC7CQ Arachis hypogaea HOM05D006963 ORTHO05D008783 2.9e-28 132.1 255 36.1
TAR623G1253 Trochodendron aralioides HOM05D006963 ORTHO05D008783 5.5e-27 127.9 201 41.3
TAR623G0981 Trochodendron aralioides HOM05D006963 ORTHO05D008783 1.0e-25 123.6 86 65.1
SEGI_19036 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 6.7e-25 120.9 103 53.4
Psat0s1214g0160 Pisum sativum HOM05D006963 ORTHO05D008783 4.4e-24 118.2 90 58.9
MD11G1148100 Malus domestica HOM05D006963 ORTHO05D008783 1.4e-22 113.2 110 58.2
arahy.Tifrunner.gnm1.ann1.YZCM4H Arachis hypogaea HOM05D006963 ORTHO05D008783 8.0e-18 97.4 273 30.8
TAR623G0866 Trochodendron aralioides HOM05D006963 ORTHO05D008783 1.8e-14 86.3 78 56.4


User provided reference genes

Program Settings