Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g031100 Solanum pennellii HOM05D006347 ORTHO05D007835 8.5e-285 983.0 509 100.0
Solyc06g074690.3 Solanum lycopersicum HOM05D006347 ORTHO05D007835 5.4e-271 937.2 571 87.6
PGSC0003DMG400007153 Solanum tuberosum HOM05D006347 ORTHO05D007835 4.7e-267 924.1 509 94.9
CAN.G1432.26 Capsicum annuum HOM05D006347 ORTHO05D007835 2.3e-221 772.3 507 82.6
Peaxi162Scf00157g00213 Petunia axillaris HOM05D006347 ORTHO05D007835 2.8e-203 712.2 546 71.8
Nitab4.5_0005038g0010 Nicotiana tabacum HOM05D006347 ORTHO05D007835 1.4e-189 666.8 481 76.5
Nitab4.5_0003470g0080 Nicotiana tabacum HOM05D006347 ORTHO05D007835 4.4e-188 661.8 509 72.1
Dinv29404 Davidia involucrata HOM05D006347 ORTHO05D007835 2.1e-150 536.6 509 58.2
GSVIVG01031423001 Vitis vinifera HOM05D006347 ORTHO05D007835 2.1e-137 493.4 531 54.2
Hma1.2p1_0884F.1_g232450 Hydrangea macrophylla HOM05D006347 ORTHO05D007835 5.6e-135 485.3 497 54.3
Thecc.09G294500 Theobroma cacao HOM05D006347 ORTHO05D007835 5.2e-133 478.8 492 53.7
QL01p014117 Quercus lobata HOM05D006347 ORTHO05D007835 2.4e-130 469.9 524 52.3
Glyma.13G320700 Glycine max HOM05D006347 ORTHO05D007835 3.2e-130 469.5 521 52.0
Cc01_g10020 Coffea canephora HOM05D006347 ORTHO05D007835 3.9e-128 462.6 527 51.4
RcHm_v2.0_Chr5g0055941 Rosa chinensis HOM05D006347 ORTHO05D007835 5.1e-128 462.2 524 51.7
MSTRG.18715 Avicennia marina HOM05D006347 ORTHO05D007835 8.6e-128 461.5 515 52.4
DCAR_015490 Daucus carota HOM05D006347 ORTHO05D007835 1.9e-127 460.3 535 50.5
Lsat_1_v5_gn_2_96801 Lactuca sativa HOM05D006347 ORTHO05D007835 1.9e-127 460.3 520 50.0
Prupe.6G116300 Prunus persica HOM05D006347 ORTHO05D007835 3.3e-127 459.5 529 50.9
Duzib168G1158 Durio zibethinus HOM05D006347 ORTHO05D007835 7.3e-127 458.4 502 51.4
SalBow6G0094 Salvia bowleyana HOM05D006347 ORTHO05D007835 7.3e-127 458.4 520 50.8
VMungo1080G1358 Vigna mungo HOM05D006347 ORTHO05D007835 9.5e-127 458.0 521 50.9
Ciclev10028160m.g Citrus clementina HOM05D006347 ORTHO05D007835 2.1e-126 456.8 500 51.8
FvH4_3g29990 Fragaria vesca HOM05D006347 ORTHO05D007835 2.1e-126 456.8 522 52.7
CiPaw.14G105000 Carya illinoinensis HOM05D006347 ORTHO05D007835 2.8e-126 456.4 525 51.2
Gohir.D07G110400 Gossypium hirsutum HOM05D006347 ORTHO05D007835 1.1e-125 454.5 513 51.9
Gorai.001G118600 Gossypium raimondii HOM05D006347 ORTHO05D007835 5.2e-125 452.2 510 51.8
MD11G1153600 Malus domestica HOM05D006347 ORTHO05D007835 6.8e-125 451.8 524 51.1
ECA238G1908 Erigeron canadensis HOM05D006347 ORTHO05D007835 1.2e-124 451.1 513 50.5
FAN11G3746 Fragaria x ananassa HOM05D006347 ORTHO05D007835 2.0e-124 450.3 530 51.5
Atru.chr3.3422 Acer truncatum HOM05D006347 ORTHO05D007835 2.6e-124 449.9 485 53.6
Gohir.A07G106500 Gossypium hirsutum HOM05D006347 ORTHO05D007835 2.6e-124 449.9 507 52.1
Actinidia24168 Actinidia chinensis HOM05D006347 ORTHO05D007835 7.6e-124 448.4 477 53.9
Manes.04G010900 Manihot esculenta HOM05D006347 ORTHO05D007835 1.7e-123 447.2 482 53.5
arahy.Tifrunner.gnm1.ann1.PRK8FW Arachis hypogaea HOM05D006347 ORTHO05D007835 2.2e-123 446.8 518 49.8
Lj2A998T24 Lonicera japonica HOM05D006347 ORTHO05D007835 3.8e-123 446.0 511 50.9
Sc12g0003850 Simmondsia chinensis HOM05D006347 ORTHO05D007835 3.8e-123 446.0 512 48.0
Lj3g0008152 Lotus japonicus HOM05D006347 ORTHO05D007835 8.4e-123 444.9 517 50.7
Potri.009G151100 Populus trichocarpa HOM05D006347 ORTHO05D007835 8.4e-123 444.9 512 51.0
FAN25G1668 Fragaria x ananassa HOM05D006347 ORTHO05D007835 2.4e-122 443.4 540 49.8
vmacro03233 Vaccinium macrocarpon HOM05D006347 ORTHO05D007835 3.2e-122 443.0 586 47.3
Lalb_Chr22g0350521 Lupinus albus HOM05D006347 ORTHO05D007835 4.2e-122 442.6 499 50.9
Medtr2g084580 Medicago truncatula HOM05D006347 ORTHO05D007835 2.7e-121 439.9 503 50.7
SGA_v2.0_scaffold27G11587 Striga asiatica HOM05D006347 ORTHO05D007835 4.6e-121 439.1 491 50.7
Migut.D02321 Erythranthe guttata HOM05D006347 ORTHO05D007835 1.3e-120 437.6 478 52.9
Sabra09G0119700 Salix brachista HOM05D006347 ORTHO05D007835 3.0e-120 436.4 517 49.1
Aqoxy1G01013 Aquilegia oxysepala HOM05D006347 ORTHO05D007835 5.1e-120 435.6 517 50.1
TPR.G32394 Trifolium pratense HOM05D006347 ORTHO05D007835 1.1e-119 434.5 509 50.3
FAN21G3835 Fragaria x ananassa HOM05D006347 ORTHO05D007835 1.5e-119 434.1 451 55.9
THA.LOC104810888 Tarenaya hassleriana HOM05D006347 ORTHO05D007835 9.6e-119 431.4 499 48.1
TWI31G1233 Tripterygium wilfordii HOM05D006347 ORTHO05D007835 2.8e-118 429.9 505 51.1
AUR62031770 Chenopodium quinoa HOM05D006347 ORTHO05D007835 1.2e-116 424.5 518 48.6
Nn2g13927 Nelumbo nucifera HOM05D006347 ORTHO05D007835 2.6e-116 423.3 475 52.4
Psat5g253920 Pisum sativum HOM05D006347 ORTHO05D007835 4.4e-116 422.5 531 49.5
CANSAT56G1452 Cannabis sativa HOM05D006347 ORTHO05D007835 7.6e-116 421.8 508 48.6
Sed0011208 Sechium edule HOM05D006347 ORTHO05D007835 1.3e-115 421.0 505 49.7
Eucgr.J00411 Eucalyptus grandis HOM05D006347 ORTHO05D007835 1.1e-114 417.9 521 48.2
HanXRQChr07g0197561 Helianthus annuus HOM05D006347 ORTHO05D007835 2.4e-114 416.8 459 51.0
Phvul.005G128700 Phaseolus vulgaris HOM05D006347 ORTHO05D007835 4.6e-113 412.5 405 55.1
EL10Ac9g21046 Beta vulgaris HOM05D006347 ORTHO05D007835 1.0e-112 411.4 492 49.2
CsaV3_6G014560 Cucumis sativus L. HOM05D006347 ORTHO05D007835 1.1e-111 407.9 519 46.2
CARHR190750 Cardamine hirsuta HOM05D006347 ORTHO05D007835 7.3e-111 405.2 510 46.9
Peaxi162Scf00755g00310 Petunia axillaris HOM05D006347 ORTHO05D007835 1.3e-110 404.4 502 53.6
PGR119G2351 Punica granatum HOM05D006347 ORTHO05D007835 3.6e-110 402.9 498 48.8
Thhalv10013199m.g Eutrema salsugineum HOM05D006347 ORTHO05D007835 3.1e-109 399.8 522 46.0
Ca_01691_v3 Cicer arietinum L. HOM05D006347 ORTHO05D007835 9.0e-109 398.3 457 52.1
Ca_30937_v3 Cicer arietinum L. HOM05D006347 ORTHO05D007835 9.0e-109 398.3 457 52.1
Hma1.2p1_0884F.1_g232440 Hydrangea macrophylla HOM05D006347 ORTHO05D007835 1.2e-108 397.9 468 50.6
Carub.0006s2054 Capsella rubella HOM05D006347 ORTHO05D007835 2.0e-108 397.1 493 47.5
AL6G33930 Arabidopsis lyrata HOM05D006347 ORTHO05D007835 1.3e-107 394.4 498 46.8
Sp6g22600 Schrenkiella parvula HOM05D006347 ORTHO05D007835 1.7e-107 394.0 502 46.2
Cfa021537 Carpinus fangiana HOM05D006347 ORTHO05D007835 6.4e-107 392.1 531 46.9
AUR62023970 Chenopodium quinoa HOM05D006347 ORTHO05D007835 1.1e-106 391.3 467 49.3
arahy.Tifrunner.gnm1.ann1.9T0HEQ Arachis hypogaea HOM05D006347 ORTHO05D007835 3.2e-106 389.8 573 42.8
MELO3C021469.2 Cucumis melo HOM05D006347 ORTHO05D007835 9.3e-106 388.3 572 43.5
Rhsim13G0103600 Rhododendron simsii HOM05D006347 ORTHO05D007835 1.2e-105 387.9 392 57.4
ClCG02G021770 Citrullus lanatus HOM05D006347 ORTHO05D007835 2.3e-104 383.6 445 51.2
AT5G22820 Arabidopsis thaliana HOM05D006347 ORTHO05D007835 3.9e-104 382.9 487 45.4
BcaB05g22687 Brassica carinata HOM05D006347 ORTHO05D007835 6.7e-104 382.1 525 45.3
BcaC03g13920 Brassica carinata HOM05D006347 ORTHO05D007835 3.1e-101 373.2 489 45.2
C02p11300 Brassica napus HOM05D006347 ORTHO05D007835 1.5e-100 370.9 494 46.2
Haze_23489 Corylus avellana HOM05D006347 ORTHO05D007835 3.8e-99 366.3 407 51.4
BNapus_Darmor_BZH_scaffold_38p00360 Brassica napus HOM05D006347 ORTHO05D007835 2.5e-98 363.6 494 45.5
PSO063G2566 Papaver somniferum HOM05D006347 ORTHO05D007835 2.5e-98 363.6 501 43.1
BraA02t05690Z Brassica rapa HOM05D006347 ORTHO05D007835 6.0e-97 359.0 497 45.3
Haze_23473 Corylus avellana HOM05D006347 ORTHO05D007835 3.3e-95 353.2 473 45.9
Aa31LG1G12890 Aethionema arabicum HOM05D006347 ORTHO05D007835 1.3e-94 351.3 527 42.1
BolC2t07198H Brassica oleracea HOM05D006347 ORTHO05D007835 1.3e-94 351.3 524 42.9
ATR0665G610 Amborella trichopoda HOM05D006347 ORTHO05D007835 1.4e-93 347.8 466 45.1
TAR633G1474 Trochodendron aralioides HOM05D006347 ORTHO05D007835 2.4e-93 347.1 351 56.7
unitig_899.g14960 Utricularia gibba HOM05D006347 ORTHO05D007835 6.5e-91 339.0 569 39.2
COL.COLO4_19257 Corchorus olitorius HOM05D006347 ORTHO05D007835 1.3e-88 331.3 536 41.4
PSO339G5358 Papaver somniferum HOM05D006347 ORTHO05D007835 1.6e-86 324.3 445 44.7
HPP92_014171 Vanilla planifolia HOM05D006347 ORTHO05D007835 2.8e-78 297.0 519 39.5
HPP92_014151 Vanilla planifolia HOM05D006347 ORTHO05D007835 1.4e-77 294.7 519 39.3
Haze_23492 Corylus avellana HOM05D006347 ORTHO05D007835 1.5e-76 291.2 411 44.5
Ah.01g016170 Amaranthus hybridus HOM05D006347 ORTHO05D007835 2.5e-74 283.9 373 46.9
Os03g0684100 Oryza sativa ssp. japonica HOM05D006347 ORTHO05D007835 7.2e-66 255.8 489 36.2
Mapoly0004s0056 Marchantia polymorpha HOM05D006347 ORTHO05D007835 3.9e-64 250.0 383 39.4
Pp3c4_24670 Physcomitrium patens HOM05D006347 ORTHO05D007835 6.7e-64 249.2 377 40.1
AagrBONN_evm.TU.Sc2ySwM_117.1516 Anthoceros agrestis HOM05D006347 ORTHO05D007835 1.7e-62 244.6 499 35.5
CBR_g54933 Chara braunii HOM05D006347 ORTHO05D007835 5.5e-58 229.6 332 40.4
Glyma.12G180067 Glycine max HOM05D006347 ORTHO05D007835 1.0e-56 225.3 189 63.0
Zm00001eb053190 Zea mays HOM05D006347 ORTHO05D007835 2.3e-56 224.2 337 43.3
FAN16G0411 Fragaria x ananassa HOM05D006347 ORTHO05D007835 1.2e-44 185.3 192 54.7
Haze_23495 Corylus avellana HOM05D006347 ORTHO05D007835 3.3e-42 177.2 246 44.3
Cpa.g.sc47.36 Carica papaya HOM05D006347 ORTHO05D007835 8.9e-40 169.1 207 47.3
Glyma.12G180133 Glycine max HOM05D006347 ORTHO05D007835 1.2e-39 168.7 193 47.2
Haze_23480 Corylus avellana HOM05D006347 ORTHO05D007835 3.4e-39 167.2 208 50.0
Ah.01g016190 Amaranthus hybridus HOM05D006347 ORTHO05D007835 2.9e-35 154.1 213 45.5
CSS0047528 Camellia sinensis var. sinensis HOM05D006347 ORTHO05D007835 2.1e-33 147.9 160 53.1
SMO265G0001 Selaginella moellendorffii HOM05D006347 ORTHO05D007835 4.3e-26 123.6 227 37.9
CDE02G2671 Ceratophyllum demersum HOM05D006347 ORTHO05D007835 1.4e-16 92.0 504 23.4
TAR633G2060 Trochodendron aralioides HOM05D006347 ORTHO05D007835 1.5e-15 88.6 74 55.4
Hund07723 Selenicereus undatus HOM05D006347 ORTHO05D007835 5.8e-15 86.7 154 42.9
SEGI_35353 Sequoiadendron giganteum HOM05D006347 ORTHO05D007835 4.3e-10 70.5 70 51.4
Actinidia14339 Actinidia chinensis HOM05D006347 ORTHO05D007835 6.2e-09 66.6 37 78.4
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 3.1e-08 64.3 108 38.9
SEGI_13685 Sequoiadendron giganteum HOM05D006347 ORTHO05D007835 4.0e-08 63.9 127 33.9
SEGI_37044 Sequoiadendron giganteum HOM05D006347 ORTHO05D007835 8.9e-08 62.8 91 42.9


User provided reference genes

Program Settings