Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 4.4e-203 711.1 360 100.0
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 8.6e-199 696.8 360 97.8
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 9.3e-177 623.6 360 86.9
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 4.9e-162 574.7 360 81.4
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.9e-161 572.8 384 77.9
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 3.3e-158 562.0 337 84.3
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.6e-131 473.4 370 64.1
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.2e-130 469.5 370 64.1
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 2.5e-129 466.1 371 63.3
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 3.0e-127 459.1 370 62.4
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 5.2e-127 458.4 250 92.8
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 7.2e-121 438.0 346 63.9
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 1.0e-114 417.5 371 55.8
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 1.8e-111 406.8 370 54.9
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 1.7e-109 400.2 370 54.3
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 2.2e-109 399.8 370 53.5
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 2.9e-109 399.4 370 54.3
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 4.9e-109 398.7 370 54.6
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 1.8e-108 396.7 370 53.2
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 1.8e-108 396.7 370 53.5
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 3.2e-108 396.0 370 53.5
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 7.0e-108 394.8 370 51.4
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 1.2e-107 394.0 370 53.0
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 1.6e-107 393.7 375 52.3
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 2.0e-107 393.3 370 52.7
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 2.0e-107 393.3 323 63.5
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 5.9e-107 391.7 370 53.0
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 1.7e-106 390.2 370 53.2
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 1.7e-106 390.2 370 53.0
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 2.3e-106 389.8 370 53.0
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 2.3e-106 389.8 372 52.7
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 2.3e-106 389.8 370 53.2
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 3.9e-106 389.0 413 48.4
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 5.0e-106 388.7 370 50.8
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 2.1e-104 383.3 370 51.4
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 2.1e-104 383.3 371 50.7
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 2.8e-104 382.9 370 53.2
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 3.6e-104 382.5 370 52.4
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 3.6e-104 382.5 370 53.2
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 6.1e-104 381.7 372 52.7
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 6.1e-104 381.7 371 51.8
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 1.4e-103 380.6 371 51.8
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 1.8e-103 380.2 370 52.2
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 4.0e-103 379.0 371 51.5
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 1.2e-102 377.5 371 50.9
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 2.6e-102 376.3 361 51.8
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 4.4e-102 375.6 370 50.3
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 7.5e-102 374.8 378 51.3
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 1.3e-101 374.0 371 50.7
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 1.3e-101 374.0 370 50.3
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 1.7e-101 373.6 370 50.8
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 3.7e-101 372.5 370 50.5
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 4.9e-101 372.1 374 50.8
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 6.4e-101 371.7 348 54.9
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 1.1e-100 370.9 370 51.1
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 1.1e-100 370.9 371 49.9
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.9e-100 370.2 371 50.7
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 5.4e-100 368.6 374 51.6
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 7.0e-100 368.2 370 49.5
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 1.2e-99 367.5 372 51.3
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 3.5e-99 365.9 370 50.3
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 6.0e-99 365.2 370 49.7
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 6.0e-99 365.2 370 49.5
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 1.0e-98 364.4 372 49.2
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 1.3e-98 364.0 372 51.9
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.3e-98 363.2 370 49.2
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 3.3e-97 359.4 375 51.5
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 3.3e-97 359.4 375 48.5
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 5.6e-97 358.6 370 49.2
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 9.5e-97 357.8 353 52.1
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 1.6e-96 357.1 379 50.4
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 4.7e-96 355.5 372 48.7
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 4.7e-96 355.5 375 50.9
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 6.2e-96 355.1 349 53.0
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 1.1e-95 354.4 378 50.3
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 1.4e-95 354.0 378 49.7
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 1.4e-95 354.0 378 49.7
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 3.1e-95 352.8 364 50.5
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 4.0e-95 352.4 376 50.3
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 5.2e-95 352.1 378 50.0
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 5.2e-95 352.1 370 47.3
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 8.9e-95 351.3 360 48.6
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 1.5e-94 350.5 378 49.5
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 1.5e-94 350.5 369 48.5
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 2.6e-94 349.7 371 47.7
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 4.4e-94 349.0 380 49.5
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 4.4e-94 349.0 405 47.2
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 7.5e-94 348.2 380 49.5
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 1.7e-93 347.1 384 48.4
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 2.2e-93 346.7 374 49.2
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.2e-93 346.7 367 48.2
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.2e-93 346.7 367 48.2
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 2.2e-93 346.7 345 51.6
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 3.7e-93 345.9 381 49.1
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 6.4e-93 345.1 377 48.5
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 9.2e-92 341.3 378 47.9
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 4.6e-91 339.0 370 52.7
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 4.6e-91 339.0 347 49.0
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 1.0e-90 337.8 374 46.5
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 5.1e-90 335.5 355 50.4
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 6.6e-90 335.1 374 46.5
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 1.9e-89 333.6 355 48.5
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 3.3e-89 332.8 360 48.6
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 9.5e-89 331.3 362 48.9
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 1.2e-86 324.3 340 50.6
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 2.6e-86 323.2 356 46.6
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 4.4e-86 322.4 321 51.1
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 9.9e-86 321.2 389 44.7
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 1.7e-85 320.5 329 50.2
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 6.4e-85 318.5 356 48.6
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 3.2e-84 316.2 368 45.1
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 1.6e-83 313.9 360 45.0
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 1.6e-83 313.9 384 44.8
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 3.5e-83 312.8 332 51.2
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 2.3e-82 310.1 351 47.6
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 5.1e-82 308.9 324 48.5
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 9.6e-81 304.7 329 48.0
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 3.6e-80 302.8 371 43.4
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 3.6e-80 302.8 295 52.5
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 5.2e-79 298.9 298 51.3
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 1.2e-78 297.7 336 47.6
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 1.6e-72 277.3 373 40.5
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 4.2e-68 262.7 291 47.4
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 9.6e-65 251.5 336 41.4
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 4.5e-62 242.7 384 36.7
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 7.6e-62 241.9 403 36.0
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 9.3e-60 235.0 301 46.2
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 5.3e-55 219.2 482 32.6
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 3.4e-54 216.5 269 45.7
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 7.6e-54 215.3 389 33.7
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 1.3e-53 214.5 218 51.8
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 2.5e-52 210.3 286 43.7
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 5.5e-52 209.1 328 36.0
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 9.3e-52 208.4 241 46.5
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 2.0e-46 190.7 259 40.2
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 3.8e-45 186.4 191 48.2
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 2.5e-44 183.7 373 30.8
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 3.0e-42 176.8 232 43.5
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 8.7e-42 175.3 225 41.3
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.3e-37 161.4 255 39.2
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.4e-36 157.9 149 53.0
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 7.9e-35 152.1 138 47.8
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.8e-32 143.7 115 54.8
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 6.3e-32 142.5 205 42.0
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 2.4e-23 114.0 428 23.4
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 1.5e-20 104.8 71 63.4
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.6e-19 101.3 145 42.1
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 6.1e-19 99.4 205 29.3
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 6.1e-11 72.8 179 31.3
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 1.8e-10 71.2 73 49.3
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 2.2e-08 64.3 42 64.3
C07p07230 Brassica napus HOM05D004815 ORTHO05D005742 4.5e-06 56.6 59 47.5


User provided reference genes

Program Settings