Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 7.5e-112 407.1 197 100.0
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 4.7e-90 334.7 176 92.6
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 7.0e-86 320.9 172 92.4
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 3.3e-75 285.4 176 83.5
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 1.3e-63 246.9 177 71.2
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 1.3e-60 236.9 180 70.0
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 3.3e-59 232.3 176 69.3
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 1.3e-52 210.3 178 62.4
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 1.5e-51 206.8 168 63.1
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 9.6e-51 204.1 178 61.2
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 2.1e-50 203.0 172 62.8
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 8.1e-50 201.1 173 60.1
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 3.1e-49 199.1 190 55.3
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 3.1e-49 199.1 179 59.8
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 3.1e-49 199.1 180 59.4
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 1.0e-47 194.1 173 56.6
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 2.9e-47 192.6 178 57.9
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 8.4e-47 191.0 166 61.4
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 1.1e-46 190.7 170 58.2
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 1.9e-46 189.9 178 56.2
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 1.2e-45 187.2 170 58.8
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 1.2e-45 187.2 170 58.8
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 2.7e-45 186.0 177 55.4
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 4.6e-45 185.3 179 57.0
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 1.3e-44 183.7 187 55.6
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 6.7e-44 181.4 171 56.7
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 6.7e-44 181.4 168 58.3
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 1.1e-43 180.6 163 55.2
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 1.1e-43 180.6 179 53.6
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 1.9e-43 179.9 177 54.2
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 4.3e-43 178.7 174 52.9
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 5.7e-43 178.3 178 51.1
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 7.4e-43 177.9 182 52.2
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 1.3e-42 177.2 189 50.3
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 1.6e-42 176.8 169 53.8
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 1.6e-42 176.8 174 54.0
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 2.8e-42 176.0 160 57.5
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 2.8e-42 176.0 179 52.0
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 3.7e-42 175.6 177 53.1
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 3.7e-42 175.6 169 53.3
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 4.8e-42 175.3 180 52.8
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 6.2e-42 174.9 178 52.2
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 6.2e-42 174.9 169 57.4
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 6.2e-42 174.9 169 57.4
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 1.1e-41 174.1 168 51.8
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 1.1e-41 174.1 188 50.5
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 1.4e-41 173.7 169 57.4
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 1.4e-41 173.7 172 52.3
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 1.8e-41 173.3 169 57.4
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 1.8e-41 173.3 175 53.1
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 3.1e-41 172.6 176 54.5
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 6.9e-41 171.4 177 52.0
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 9.0e-41 171.0 171 53.2
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 9.0e-41 171.0 177 53.7
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 9.0e-41 171.0 172 54.7
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 1.2e-40 170.6 175 50.3
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 3.4e-40 169.1 195 47.2
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 3.4e-40 169.1 178 51.7
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 5.8e-40 168.3 180 52.2
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 5.8e-40 168.3 179 52.0
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 1.0e-39 167.5 175 51.4
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 1.3e-39 167.2 177 52.5
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 3.8e-39 165.6 177 49.7
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 3.8e-39 165.6 176 50.0
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 6.5e-39 164.9 167 51.5
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 6.5e-39 164.9 167 51.5
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 6.5e-39 164.9 179 51.4
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 1.4e-38 163.7 168 54.8
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 1.4e-38 163.7 172 51.7
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 1.9e-38 163.3 170 51.2
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 2.5e-38 162.9 180 48.9
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 5.5e-38 161.8 179 50.8
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 5.5e-38 161.8 172 50.6
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 7.1e-38 161.4 167 50.9
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 9.3e-38 161.0 173 51.4
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 2.7e-37 159.5 171 50.3
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 4.6e-37 158.7 174 52.9
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 7.9e-37 157.9 182 47.3
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 1.0e-36 157.5 182 47.3
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 1.0e-36 157.5 181 47.5
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 1.3e-36 157.1 174 52.9
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 3.9e-36 155.6 167 49.1
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 6.7e-36 154.8 178 50.0
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 6.7e-36 154.8 183 45.4
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 1.1e-35 154.1 178 47.2
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 1.5e-35 153.7 169 47.9
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 4.3e-35 152.1 177 48.6
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 4.3e-35 152.1 185 46.5
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 9.7e-35 151.0 177 47.5
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 2.8e-34 149.4 178 47.2
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 4.1e-33 145.6 166 45.8
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 5.3e-33 145.2 182 45.6
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 3.8e-31 139.0 183 44.8
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 3.8e-31 139.0 120 54.2
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 1.1e-30 137.5 178 45.5
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 1.4e-30 137.1 174 44.3
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 7.2e-30 134.8 178 48.3
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 7.2e-30 134.8 121 55.4
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 2.1e-29 133.3 157 46.5
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 2.1e-29 133.3 169 44.4
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 2.7e-29 132.9 179 43.0
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 2.7e-29 132.9 182 41.2
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 1.8e-28 130.2 180 42.8
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 5.1e-28 128.6 166 45.8
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 2.0e-27 126.7 166 44.0
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 4.3e-27 125.6 168 44.0
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 9.7e-27 124.4 166 43.4
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 9.7e-27 124.4 150 44.7
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 1.7e-26 123.6 150 44.7
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 2.8e-26 122.9 172 43.6
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 6.3e-26 121.7 165 40.0
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 1.4e-25 120.6 171 41.5
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 1.4e-25 120.6 171 41.5
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 1.8e-25 120.2 165 41.2
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 1.8e-25 120.2 126 53.2
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 4.1e-25 119.0 138 43.5
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 5.3e-25 118.6 168 40.5
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 6.9e-25 118.2 168 39.9
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 6.9e-25 118.2 157 42.7
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 1.2e-24 117.5 166 39.2
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 2.0e-24 116.7 171 40.4
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 2.6e-24 116.3 168 39.9
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 4.5e-24 115.5 168 40.5
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 5.9e-24 115.2 168 38.1
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 5.9e-24 115.2 170 38.8
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 1.7e-23 113.6 168 38.1
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 2.2e-23 113.2 168 39.3
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 2.9e-23 112.8 168 40.5
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 8.5e-23 111.3 168 37.5
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 1.9e-22 110.2 168 38.1
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 7.2e-22 108.2 113 49.6
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 2.1e-21 106.7 168 37.5
vmacro14354 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 4.7e-21 105.5 110 54.5
unitig_746.g26607 Utricularia gibba HOM05D005110 ORTHO05D006074 2.3e-20 103.2 182 36.3
Actinidia35470 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.5e-19 100.5 83 62.7
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 1.3e-18 97.4 146 37.0
ATR0580G107 Amborella trichopoda HOM05D005110 ORTHO05D006074 6.3e-18 95.1 194 37.1
Haze_23356 Corylus avellana HOM05D005110 ORTHO05D006074 2.4e-17 93.2 95 52.6
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 9.1e-17 91.3 115 44.3
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 7.7e-16 88.2 192 33.9
BolC9t58287H Brassica oleracea HOM05D005110 ORTHO05D006074 1.8e-12 77.0 167 34.1
C09p54160 Brassica napus HOM05D005110 ORTHO05D006074 2.3e-12 76.6 165 33.3
TPR.G4458 Trifolium pratense HOM05D005110 ORTHO05D006074 1.8e-09 67.0 68 51.5
Zm00001eb242880 Zea mays HOM05D005110 ORTHO05D006074 2.9e-07 59.7 191 27.7


User provided reference genes

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