Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g030560 Solanum pennellii HOM05D006712 ORTHO05D008219 1.4e-190 669.5 353 100.0
PGSC0003DMG400005929 Solanum tuberosum HOM05D006712 ORTHO05D008219 1.1e-177 626.7 353 94.9
CAN.G919.48 Capsicum annuum HOM05D006712 ORTHO05D008219 1.7e-154 549.7 362 83.7
Nitab4.5_0008897g0020 Nicotiana tabacum HOM05D006712 ORTHO05D008219 7.8e-144 514.2 366 79.2
Nitab4.5_0000380g0060 Nicotiana tabacum HOM05D006712 ORTHO05D008219 5.4e-137 491.5 406 71.7
Peaxi162Scf00098g00079 Petunia axillaris HOM05D006712 ORTHO05D008219 4.4e-123 445.3 354 70.9
Cc01_g07690 Coffea canephora HOM05D006712 ORTHO05D008219 8.4e-106 387.9 372 59.9
CSS0013127 Camellia sinensis var. sinensis HOM05D006712 ORTHO05D008219 1.1e-102 377.5 366 59.3
Lj1A268G10 Lonicera japonica HOM05D006712 ORTHO05D008219 2.2e-98 363.2 368 58.4
Dinv18839 Davidia involucrata HOM05D006712 ORTHO05D008219 2.5e-97 359.8 353 60.3
MSTRG.17680 Avicennia marina HOM05D006712 ORTHO05D008219 2.7e-96 356.3 369 58.3
Oeu009041.1 Olea europaea HOM05D006712 ORTHO05D008219 8.7e-95 351.3 370 57.3
DCAR_014052 Daucus carota HOM05D006712 ORTHO05D008219 1.5e-94 350.5 365 56.7
SalBow3G4582 Salvia bowleyana HOM05D006712 ORTHO05D008219 5.7e-94 348.6 372 57.3
Atru.chr3.3110 Acer truncatum HOM05D006712 ORTHO05D008219 1.6e-93 347.1 361 57.1
Cfa010172 Carpinus fangiana HOM05D006712 ORTHO05D008219 1.1e-92 344.4 361 57.6
RcHm_v2.0_Chr5g0048501 Rosa chinensis HOM05D006712 ORTHO05D008219 3.1e-92 342.8 360 55.8
Hma1.2p1_0101F.1_g049480 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 4.1e-92 342.4 353 57.2
CiPaw.13G129200 Carya illinoinensis HOM05D006712 ORTHO05D008219 6.9e-92 341.7 364 55.2
Hund20948 Selenicereus undatus HOM05D006712 ORTHO05D008219 3.4e-91 339.3 378 54.5
Ciclev10028702m.g Citrus clementina HOM05D006712 ORTHO05D008219 4.5e-91 339.0 357 56.0
FAN16G2749 Fragaria x ananassa HOM05D006712 ORTHO05D008219 5.9e-91 338.6 356 55.1
Manes.11G101400 Manihot esculenta HOM05D006712 ORTHO05D008219 5.9e-91 338.6 366 54.9
TAR623G0680 Trochodendron aralioides HOM05D006712 ORTHO05D008219 5.9e-91 338.6 355 56.1
FAN11G0164 Fragaria x ananassa HOM05D006712 ORTHO05D008219 1.7e-90 337.0 355 54.6
Potri.001G216500 Populus trichocarpa HOM05D006712 ORTHO05D008219 5.0e-90 335.5 352 56.5
Thecc.09G272000 Theobroma cacao HOM05D006712 ORTHO05D008219 5.0e-90 335.5 362 58.0
Gohir.A09G099400 Gossypium hirsutum HOM05D006712 ORTHO05D008219 1.9e-89 333.6 362 54.7
CARHR191410 Cardamine hirsuta HOM05D006712 ORTHO05D008219 2.1e-88 330.1 366 53.3
CsaV3_1G043820 Cucumis sativus L. HOM05D006712 ORTHO05D008219 2.7e-88 329.7 366 54.4
Sed0013977 Sechium edule HOM05D006712 ORTHO05D008219 2.7e-88 329.7 355 56.1
AUR62020228 Chenopodium quinoa HOM05D006712 ORTHO05D008219 6.1e-88 328.6 368 53.3
arahy.Tifrunner.gnm1.ann1.4CVW1F Arachis hypogaea HOM05D006712 ORTHO05D008219 7.9e-88 328.2 379 51.2
Eucgr.B03815 Eucalyptus grandis HOM05D006712 ORTHO05D008219 1.3e-87 327.4 371 52.6
AUR62001554 Chenopodium quinoa HOM05D006712 ORTHO05D008219 5.1e-87 325.5 368 53.5
MELO3C015061.2 Cucumis melo HOM05D006712 ORTHO05D008219 6.7e-87 325.1 366 53.6
Rhsim13G0196500 Rhododendron simsii HOM05D006712 ORTHO05D008219 8.7e-87 324.7 452 47.6
Gorai.006G115800 Gossypium raimondii HOM05D006712 ORTHO05D008219 1.1e-86 324.3 378 52.9
AL6G33100 Arabidopsis lyrata HOM05D006712 ORTHO05D008219 1.9e-86 323.6 370 51.4
EL10Ac7g16293 Beta vulgaris HOM05D006712 ORTHO05D008219 2.5e-86 323.2 401 50.9
COL.COLO4_25432 Corchorus olitorius HOM05D006712 ORTHO05D008219 2.5e-86 323.2 363 54.5
Aqoxy1G00652 Aquilegia oxysepala HOM05D006712 ORTHO05D008219 7.4e-86 321.6 354 54.0
Carub.0006s1976 Capsella rubella HOM05D006712 ORTHO05D008219 7.4e-86 321.6 370 50.8
Lalb_Chr19g0136261 Lupinus albus HOM05D006712 ORTHO05D008219 1.3e-85 320.9 366 52.5
Duzib168G2384 Durio zibethinus HOM05D006712 ORTHO05D008219 1.6e-85 320.5 374 52.9
THA.LOC104810933 Tarenaya hassleriana HOM05D006712 ORTHO05D008219 1.6e-85 320.5 353 53.3
Lj3g0027754 Lotus japonicus HOM05D006712 ORTHO05D008219 3.7e-85 319.3 367 52.6
Glyma.11G178255 Glycine max HOM05D006712 ORTHO05D008219 4.8e-85 318.9 362 53.0
Sc21g0006790 Simmondsia chinensis HOM05D006712 ORTHO05D008219 6.9e-84 315.1 366 49.7
Sp6g23080 Schrenkiella parvula HOM05D006712 ORTHO05D008219 1.2e-83 314.3 376 50.5
VMungo1127G0962 Vigna mungo HOM05D006712 ORTHO05D008219 1.5e-83 313.9 360 52.8
TWI31G0890 Tripterygium wilfordii HOM05D006712 ORTHO05D008219 2.6e-83 313.2 367 51.0
Phvul.011G099200 Phaseolus vulgaris HOM05D006712 ORTHO05D008219 3.4e-83 312.8 360 52.5
ClCG03G012180 Citrullus lanatus HOM05D006712 ORTHO05D008219 1.7e-82 310.5 407 48.9
Aa31LG1G13310 Aethionema arabicum HOM05D006712 ORTHO05D008219 2.2e-82 310.1 382 47.9
Lalb_Chr03g0028431 Lupinus albus HOM05D006712 ORTHO05D008219 6.5e-82 308.5 354 53.7
AT5G22120 Arabidopsis thaliana HOM05D006712 ORTHO05D008219 1.4e-81 307.4 371 49.1
PSO339G1919 Papaver somniferum HOM05D006712 ORTHO05D008219 4.2e-81 305.8 362 53.0
GSVIVG01037582001 Vitis vinifera HOM05D006712 ORTHO05D008219 1.2e-80 304.3 280 59.6
A03p10600 Brassica napus HOM05D006712 ORTHO05D008219 2.7e-80 303.1 370 47.8
BcaB01g04741 Brassica carinata HOM05D006712 ORTHO05D008219 3.6e-80 302.8 359 49.6
C03p12200 Brassica napus HOM05D006712 ORTHO05D008219 4.6e-80 302.4 359 48.5
BolC3t13693H Brassica oleracea HOM05D006712 ORTHO05D008219 4.6e-80 302.4 359 48.5
BcaC01g06601 Brassica carinata HOM05D006712 ORTHO05D008219 7.9e-80 301.6 358 48.6
PSO384G4991 Papaver somniferum HOM05D006712 ORTHO05D008219 1.4e-79 300.8 362 52.5
BraA03t10372Z Brassica rapa HOM05D006712 ORTHO05D008219 1.8e-79 300.4 371 47.4
Glyma.12G094900 Glycine max HOM05D006712 ORTHO05D008219 3.9e-79 299.3 360 51.7
arahy.Tifrunner.gnm1.ann1.UJS8TC Arachis hypogaea HOM05D006712 ORTHO05D008219 1.5e-78 297.4 390 48.2
Ca_19473_v3 Cicer arietinum L. HOM05D006712 ORTHO05D008219 8.5e-74 281.6 366 50.3
GSVIVG01024643001 Vitis vinifera HOM05D006712 ORTHO05D008219 1.1e-73 281.2 280 56.8
Migut.N02451 Erythranthe guttata HOM05D006712 ORTHO05D008219 1.4e-73 280.8 244 64.8
Gohir.D09G098800 Gossypium hirsutum HOM05D006712 ORTHO05D008219 1.2e-72 277.7 274 58.8
unitig_27.g25124 Utricularia gibba HOM05D006712 ORTHO05D008219 3.6e-72 276.2 364 49.5
MD14G1087800 Malus domestica HOM05D006712 ORTHO05D008219 2.3e-71 273.5 230 64.3
Actinidia24254 Actinidia chinensis HOM05D006712 ORTHO05D008219 5.2e-71 272.3 369 48.8
SGA_v2.0_scaffold92G28138 Striga asiatica HOM05D006712 ORTHO05D008219 3.7e-69 266.2 331 51.1
ECA238G0730 Erigeron canadensis HOM05D006712 ORTHO05D008219 1.2e-67 261.2 234 60.7
HanXRQChr04g0096771 Helianthus annuus HOM05D006712 ORTHO05D008219 2.0e-67 260.4 279 55.6
HPP92_002650 Vanilla planifolia HOM05D006712 ORTHO05D008219 8.0e-64 248.4 358 46.4
Lsat_1_v5_gn_2_34521 Lactuca sativa HOM05D006712 ORTHO05D008219 3.0e-63 246.5 246 56.5
Hma1.2p1_0101F.1_g049490 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 1.2e-62 244.6 229 60.7
FvH4_3g26410 Fragaria vesca HOM05D006712 ORTHO05D008219 1.5e-62 244.2 352 44.6
Medtr4g051518 Medicago truncatula HOM05D006712 ORTHO05D008219 4.4e-62 242.7 249 55.0
vmacro03955 Vaccinium macrocarpon HOM05D006712 ORTHO05D008219 1.1e-60 238.0 464 40.1
Actinidia07277 Actinidia chinensis HOM05D006712 ORTHO05D008219 2.0e-59 233.8 253 55.3
Zm00001eb282230 Zea mays HOM05D006712 ORTHO05D008219 2.0e-59 233.8 360 43.9
Thhalv10013868m.g Eutrema salsugineum HOM05D006712 ORTHO05D008219 3.5e-59 233.0 347 42.4
MBI17_g02433_MAGBIO Magnolia biondii HOM05D006712 ORTHO05D008219 2.7e-56 223.4 403 37.7
Psat7g204400 Pisum sativum HOM05D006712 ORTHO05D008219 3.6e-56 223.0 242 54.1
Cpa.g.sc103.11 Carica papaya HOM05D006712 ORTHO05D008219 3.0e-55 219.9 318 46.9
Sabra16G0127200 Salix brachista HOM05D006712 ORTHO05D008219 3.4e-54 216.5 262 51.5
CDE06G0581 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 6.3e-53 212.2 374 39.0
Nn6g34683 Nelumbo nucifera HOM05D006712 ORTHO05D008219 5.4e-52 209.1 379 41.4
BcaB08g36451 Brassica carinata HOM05D002527 ORTHO05D008219 3.5e-51 206.5 248 48.4
TPR.G4637 Trifolium pratense HOM05D006712 ORTHO05D008219 4.5e-51 206.1 274 48.5
QL01p019587 Quercus lobata HOM05D006712 ORTHO05D008219 1.3e-50 204.5 145 71.7
Ah.15g099020 Amaranthus hybridus HOM05D006712 ORTHO05D008219 3.8e-50 203.0 273 49.1
BcaC04g19542 Brassica carinata HOM05D006712 ORTHO05D008219 3.2e-49 199.9 230 50.9
Os01g0965600 Oryza sativa ssp. japonica HOM05D006712 ORTHO05D008219 2.1e-48 197.2 265 49.4
Haze_23559 Corylus avellana HOM05D006712 ORTHO05D008219 2.6e-46 190.3 270 48.1
Prupe.7G038700 Prunus persica HOM05D006712 ORTHO05D008219 4.9e-45 186.0 246 48.8
SHI25255 Sapria himalayana HOM05D000265 ORTHO05D000161 7.8e-43 178.7 225 44.9
Mapoly0027s0100 Marchantia polymorpha HOM05D006712 ORTHO05D008219 3.6e-40 169.9 380 33.4
Pp3c7_620 Physcomitrium patens HOM05D006712 ORTHO05D008219 3.4e-38 163.3 376 37.0
SEGI_35195 Sequoiadendron giganteum HOM05D006712 ORTHO05D008219 2.9e-37 160.2 234 44.4
SMO119G0218 Selaginella moellendorffii HOM05D006712 ORTHO05D008219 1.3e-34 151.4 365 33.7
QL01p019597 Quercus lobata HOM05D006712 ORTHO05D008219 6.6e-34 149.1 218 49.1
ATR0772G163 Amborella trichopoda HOM05D006712 ORTHO05D008219 2.1e-32 144.1 279 41.9
Thecc.09G272200 Theobroma cacao HOM05D006712 ORTHO05D008219 3.1e-31 140.2 141 61.0
C09p54580 Brassica napus HOM05D006712 ORTHO05D008219 1.2e-27 128.3 150 52.7
BolC9t58325H Brassica oleracea HOM05D006712 ORTHO05D008219 1.2e-27 128.3 150 52.7
BraA10t43946Z Brassica rapa HOM05D006712 ORTHO05D008219 1.6e-24 117.9 206 42.7
BcaC04g19541 Brassica carinata HOM05D002527 ORTHO05D002865 2.3e-23 114.0 92 63.0
A10p18660 Brassica napus HOM05D002527 ORTHO05D002865 7.5e-22 109.0 185 41.1
AagrBONN_evm.TU.Sc2ySwM_117.1746 Anthoceros agrestis HOM05D006712 ORTHO05D008219 8.3e-21 105.5 238 36.1
Medtr4g051435 Medicago truncatula HOM05D000445 ORTHO05D000314 1.6e-19 101.3 117 47.9
FAN21G2251 Fragaria x ananassa HOM05D006712 ORTHO05D008219 8.6e-18 95.5 65 72.3
Sabra16G0127300 Salix brachista HOM05D006712 ORTHO05D008219 1.2e-16 91.7 65 72.3
ATR0772G219 Amborella trichopoda HOM05D006712 ORTHO05D008219 8.1e-16 89.0 94 52.1
Duzib170G0178 Durio zibethinus HOM05D006712 ORTHO05D008219 4.1e-12 76.6 92 51.1
CDE07G1644 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 9.2e-12 75.5 63 61.9
CBR_g40336 Chara braunii HOM05D006712 ORTHO05D008219 2.1e-11 74.3 225 30.7
BcaC01g06603 Brassica carinata HOM05D006712 ORTHO05D008219 2.3e-10 70.9 72 55.6
C09p54560 Brassica napus HOM05D000021 ORTHO05D000010 2.5e-09 67.4 52 57.7
BolC9t58324H Brassica oleracea HOM05D000021 ORTHO05D000010 2.5e-09 67.4 52 57.7
BcaC04g19543 Brassica carinata HOM05D006712 ORTHO05D008219 7.6e-06 55.8 39 66.7


User provided reference genes

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