Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g030230 Solanum pennellii HOM05D000135 ORTHO05D000816 5.4e-28 128.3 66 100.0
PGSC0003DMG400005909 Solanum tuberosum HOM05D000135 ORTHO05D000816 1.2e-24 117.1 73 86.3
Solyc06g073830.1 Solanum lycopersicum HOM05D000135 ORTHO05D000816 2.8e-24 115.9 66 90.9
Nitab4.5_0000875g0030 Nicotiana tabacum HOM05D000135 ORTHO05D000816 1.7e-18 96.7 61 78.7
Nitab4.5_0002183g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000816 1.7e-18 96.7 61 78.7
CAN.G1463.22 Capsicum annuum HOM05D000135 ORTHO05D000816 2.3e-18 96.3 51 94.1
Nitab4.5_0002498g0070 Nicotiana tabacum HOM05D000135 ORTHO05D000816 5.6e-17 91.7 63 76.2
Peaxi162Scf00098g00156 Petunia axillaris HOM05D000135 ORTHO05D000816 2.1e-16 89.7 63 73.0
PGSC0003DMG400040538 Solanum tuberosum HOM05D000135 ORTHO05D000816 3.6e-16 89.0 69 69.6
Peaxi162Scf00259g00126 Petunia axillaris HOM05D000135 ORTHO05D000816 6.2e-16 88.2 58 77.6
PGSC0003DMG400045603 Solanum tuberosum HOM05D000135 ORTHO05D000816 6.2e-16 88.2 52 80.8
Nitab4.5_0007815g0080 Nicotiana tabacum HOM05D000135 ORTHO05D000816 8.1e-16 87.8 50 84.0
Solyc11g071740.2 Solanum lycopersicum HOM05D000135 ORTHO05D000816 8.1e-16 87.8 50 84.0
PGSC0003DMG400002993 Solanum tuberosum HOM05D000135 ORTHO05D000816 1.4e-15 87.0 51 80.4
Sopen11g029410 Solanum pennellii HOM05D000135 ORTHO05D000816 1.8e-15 86.7 48 85.4
Sopen11g029430 Solanum pennellii HOM05D000135 ORTHO05D000816 4.0e-15 85.5 61 70.5
Nitab4.5_0002498g0080 Nicotiana tabacum HOM05D000135 ORTHO05D000816 5.3e-15 85.1 57 71.9
Solyc11g071760.3 Solanum lycopersicum HOM05D000135 ORTHO05D000816 5.3e-15 85.1 61 70.5
PGSC0003DMG400002994 Solanum tuberosum HOM05D000135 ORTHO05D000816 5.3e-15 85.1 51 80.4
Peaxi162Scf00259g00018 Petunia axillaris HOM05D000135 ORTHO05D000816 1.2e-14 84.0 56 76.8
CAN.G742.5 Capsicum annuum HOM05D000135 ORTHO05D000816 2.6e-14 82.8 53 73.6
Sopen11g029420 Solanum pennellii HOM05D000135 ORTHO05D000816 2.6e-14 82.8 48 79.2
CAN.G742.23 Capsicum annuum HOM05D000135 ORTHO05D000816 7.6e-14 81.3 70 62.9
Eucgr.F03632 Eucalyptus grandis HOM05D000135 ORTHO05D000816 1.6e-11 73.6 55 63.6
Cpa.g.sc36.91 Carica papaya HOM05D000135 ORTHO05D000816 2.7e-11 72.8 58 62.1
QL02p016339 Quercus lobata HOM05D000135 ORTHO05D000816 7.9e-11 71.2 63 54.0
Lj2C97T3 Lonicera japonica HOM05D000135 ORTHO05D000816 2.3e-10 69.7 46 67.4
QL02p016392 Quercus lobata HOM05D000135 ORTHO05D000816 2.3e-10 69.7 63 50.8
FvH4_5g26790 Fragaria vesca HOM05D000135 ORTHO05D000816 3.0e-10 69.3 52 61.5
FAN04G2622 Fragaria x ananassa HOM05D000135 ORTHO05D000816 3.0e-10 69.3 52 61.5
FAN08G1719 Fragaria x ananassa HOM05D000135 ORTHO05D000816 3.0e-10 69.3 52 61.5
FAN13G2467 Fragaria x ananassa HOM05D000135 ORTHO05D000816 3.0e-10 69.3 52 61.5
FAN18G1887 Fragaria x ananassa HOM05D000135 ORTHO05D000816 3.0e-10 69.3 52 61.5
QL02p016429 Quercus lobata HOM05D000135 ORTHO05D000816 3.0e-10 69.3 56 55.4
SalBow1G7946 Salvia bowleyana HOM05D000135 ORTHO05D000816 3.0e-10 69.3 48 64.6
SalBow7G1515 Salvia bowleyana HOM05D000135 ORTHO05D000816 3.0e-10 69.3 48 64.6
Duzib147G0709 Durio zibethinus HOM05D000135 ORTHO05D000816 5.1e-10 68.6 52 61.5
Potri.005G259900 Populus trichocarpa HOM05D000135 ORTHO05D000816 5.1e-10 68.6 61 52.5
RcHm_v2.0_Chr7g0217701 Rosa chinensis HOM05D000135 ORTHO05D000816 5.1e-10 68.6 52 61.5
SGA_v2.0_scaffold47G17572 Striga asiatica HOM05D000135 ORTHO05D000816 5.1e-10 68.6 48 64.6
Manes.05G113200 Manihot esculenta HOM05D000135 ORTHO05D000816 8.7e-10 67.8 47 63.8
DCAR_009849 Daucus carota HOM05D000135 ORTHO05D000816 1.1e-09 67.4 53 58.5
CiPaw.07G129800 Carya illinoinensis HOM05D000135 ORTHO05D000816 1.5e-09 67.0 63 54.0
Prupe.5G000600 Prunus persica HOM05D000135 ORTHO05D000816 1.5e-09 67.0 54 61.1
QL02p016421 Quercus lobata HOM05D000135 ORTHO05D000816 1.9e-09 66.6 61 49.2
EL10Ac2g03275 Beta vulgaris HOM05D000135 ORTHO05D000816 2.5e-09 66.2 49 67.3
Sabra05G0201600 Salix brachista HOM05D000135 ORTHO05D000816 2.5e-09 66.2 47 63.8
Lj2C97T4 Lonicera japonica HOM05D000135 ORTHO05D000816 3.3e-09 65.9 44 65.9
Lj2C97T5 Lonicera japonica HOM05D000135 ORTHO05D000816 3.3e-09 65.9 44 65.9
Potri.002G001400 Populus trichocarpa HOM05D000135 ORTHO05D000816 3.3e-09 65.9 49 57.1
SalBow7G4318 Salvia bowleyana HOM05D016915 ORTHO05D000816 3.3e-09 65.9 48 60.4
GSVIVG01013467001 Vitis vinifera HOM05D000135 ORTHO05D000816 3.3e-09 65.9 45 64.4
Manes.15G159100 Manihot esculenta HOM05D000135 ORTHO05D000816 4.3e-09 65.5 51 60.8
Cfa014171 Carpinus fangiana HOM05D000135 ORTHO05D000816 5.6e-09 65.1 53 54.7
COL.COLO4_17166 Corchorus olitorius HOM05D000135 ORTHO05D000816 5.6e-09 65.1 42 69.0
Gohir.D04G078000 Gossypium hirsutum HOM05D000135 ORTHO05D000816 5.6e-09 65.1 48 58.3
Gorai.012G087800 Gossypium raimondii HOM05D000135 ORTHO05D000816 5.6e-09 65.1 48 58.3
Haze_22895 Corylus avellana HOM05D000135 ORTHO05D000816 7.3e-09 64.7 50 58.0
SalBow1G3513 Salvia bowleyana HOM05D016915 ORTHO05D000816 7.3e-09 64.7 48 58.3
Atru.chr13.16 Acer truncatum HOM05D000135 ORTHO05D000816 9.6e-09 64.3 53 58.5
Gohir.A05G339500 Gossypium hirsutum HOM05D000135 ORTHO05D000816 1.3e-08 63.9 48 58.3
PSO170G5225 Papaver somniferum HOM05D031213 ORTHO05D000816 1.6e-08 63.5 68 50.0
SGA_v2.0_scaffold47G17571 Striga asiatica HOM05D000135 ORTHO05D000816 1.6e-08 63.5 48 60.4
TPR.G39344 Trifolium pratense HOM05D000135 ORTHO05D000816 1.6e-08 63.5 44 63.6
PGR031G1432 Punica granatum HOM05D000135 ORTHO05D000816 2.1e-08 63.2 47 61.7
TWI12G0256 Tripterygium wilfordii HOM05D000135 ORTHO05D000816 2.1e-08 63.2 44 65.9
Haze_14848 Corylus avellana HOM05D000135 ORTHO05D000816 2.8e-08 62.8 49 53.1
Manes.17G104400 Manihot esculenta HOM05D000135 ORTHO05D000816 2.8e-08 62.8 50 56.0
Potri.001G332900 Populus trichocarpa HOM05D000135 ORTHO05D000816 2.8e-08 62.8 46 56.5
Duzib264G0451 Durio zibethinus HOM05D000135 ORTHO05D000816 3.6e-08 62.4 44 63.6
Duzib264G0910 Durio zibethinus HOM05D000135 ORTHO05D000816 3.6e-08 62.4 44 63.6
Migut.K01451 Erythranthe guttata HOM05D000135 ORTHO05D000816 3.6e-08 62.4 49 57.1
Lalb_Chr14g0363211 Lupinus albus HOM05D000135 ORTHO05D000816 4.8e-08 62.0 44 61.4
PSO170G5965 Papaver somniferum HOM05D031213 ORTHO05D000816 4.8e-08 62.0 67 49.3
Rhsim08G0044100 Rhododendron simsii HOM05D000135 ORTHO05D000816 4.8e-08 62.0 48 60.4
Sc09g0007590 Simmondsia chinensis HOM05D000135 ORTHO05D000816 4.8e-08 62.0 53 58.5
TAR622G0710 Trochodendron aralioides HOM05D000135 ORTHO05D000816 4.8e-08 62.0 46 56.5
Lju41C51T3 Lonicera japonica HOM05D000135 ORTHO05D000816 6.2e-08 61.6 48 54.2
Thecc.04G033300 Theobroma cacao HOM05D000135 ORTHO05D000816 6.2e-08 61.6 40 65.0
CANSAT25G2687 Cannabis sativa HOM05D000135 ORTHO05D000816 8.1e-08 61.2 44 63.6
Migut.K01450 Erythranthe guttata HOM05D000135 ORTHO05D000816 8.1e-08 61.2 48 56.2
Glyma.16G059300 Glycine max HOM05D000135 ORTHO05D000816 8.1e-08 61.2 44 59.1
PSO017G0388 Papaver somniferum HOM05D031213 ORTHO05D000816 8.1e-08 61.2 68 48.5
Prupe.3G303600 Prunus persica HOM05D000135 ORTHO05D000816 8.1e-08 61.2 42 61.9
Aqoxy5G00935 Aquilegia oxysepala HOM05D000135 ORTHO05D000816 1.1e-07 60.8 38 68.4
Medtr6g023460 Medicago truncatula HOM05D000135 ORTHO05D000816 1.1e-07 60.8 44 61.4
TAR622G0218 Trochodendron aralioides HOM05D000135 ORTHO05D000816 1.1e-07 60.8 46 56.5
Atru.chr6.2532 Acer truncatum HOM05D000135 ORTHO05D000816 1.4e-07 60.5 46 54.3
Migut.K01452 Erythranthe guttata HOM05D016915 ORTHO05D000816 1.4e-07 60.5 48 56.2
Eucgr.B00127 Eucalyptus grandis HOM05D000135 ORTHO05D000816 1.4e-07 60.5 44 61.4
MD06G1143500 Malus domestica HOM05D000135 ORTHO05D000816 1.4e-07 60.5 42 69.0
Cfa021347 Carpinus fangiana HOM05D000135 ORTHO05D000816 1.8e-07 60.1 44 54.5
MD14G1158700 Malus domestica HOM05D000135 ORTHO05D000816 1.8e-07 60.1 48 58.3
Eucgr.J02318 Eucalyptus grandis HOM05D000135 ORTHO05D000816 2.4e-07 59.7 46 58.7
FvH4_6g53150 Fragaria vesca HOM05D000135 ORTHO05D000816 2.4e-07 59.7 42 61.9
FAN14G0778 Fragaria x ananassa HOM05D000135 ORTHO05D000816 2.4e-07 59.7 42 61.9
Psat3g176000 Pisum sativum HOM05D000135 ORTHO05D000816 2.4e-07 59.7 43 65.1
SalBow1G2517 Salvia bowleyana HOM05D016915 ORTHO05D000816 2.4e-07 59.7 48 54.2
SalBow7G4752 Salvia bowleyana HOM05D016915 ORTHO05D000816 2.4e-07 59.7 48 54.2
TAR381G0615 Trochodendron aralioides HOM05D000135 ORTHO05D000816 2.4e-07 59.7 42 59.5
GSVIVG01010378001 Vitis vinifera HOM05D000135 ORTHO05D000816 2.4e-07 59.7 45 60.0
Cc07_g00660 Coffea canephora HOM05D000135 ORTHO05D000816 3.1e-07 59.3 44 56.8
Lsat_1_v5_gn_8_25621 Lactuca sativa HOM05D000135 ORTHO05D000816 3.1e-07 59.3 65 49.2
PSO017G5575 Papaver somniferum HOM05D031213 ORTHO05D000816 3.1e-07 59.3 65 47.7
Sc07g0004160 Simmondsia chinensis HOM05D000135 ORTHO05D000816 3.1e-07 59.3 46 58.7
COL.COLO4_12261 Corchorus olitorius HOM05D000135 ORTHO05D000816 4.0e-07 58.9 59 54.2
Dinv14818 Davidia involucrata HOM05D000135 ORTHO05D000816 4.0e-07 58.9 45 48.9
Duzib093G1260 Durio zibethinus HOM05D000135 ORTHO05D000816 4.0e-07 58.9 54 48.1
Eucgr.B00128 Eucalyptus grandis HOM05D000135 ORTHO05D000816 4.0e-07 58.9 44 63.6
Lj7C609T6 Lonicera japonica HOM05D000135 ORTHO05D000816 4.0e-07 58.9 44 56.8
PSO017G1231 Papaver somniferum HOM05D000135 ORTHO05D000816 4.0e-07 58.9 67 47.8
Psat1g085520 Pisum sativum HOM05D000135 ORTHO05D000816 4.0e-07 58.9 44 59.1
QL02p071822 Quercus lobata HOM05D000135 ORTHO05D000816 4.0e-07 58.9 44 56.8
CiPaw.03G053600 Carya illinoinensis HOM05D000135 ORTHO05D000816 5.3e-07 58.5 45 60.0
MBI01_g09380_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 5.3e-07 58.5 42 59.5
CiPaw.08G079300 Carya illinoinensis HOM05D000135 ORTHO05D000816 6.9e-07 58.2 65 47.7
Ciclev10018267m.g Citrus clementina HOM05D000135 ORTHO05D000816 6.9e-07 58.2 46 54.3
Rhsim10G0007700 Rhododendron simsii HOM05D000135 ORTHO05D000816 6.9e-07 58.2 46 56.5
Rhsim10G0007900 Rhododendron simsii HOM05D000135 ORTHO05D000816 6.9e-07 58.2 46 56.5
Ca_28119_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000816 9.0e-07 57.8 42 64.3
Migut.F00079 Erythranthe guttata HOM05D016915 ORTHO05D000816 9.0e-07 57.8 42 61.9
Glyma.05G047100 Glycine max HOM05D000135 ORTHO05D000816 9.0e-07 57.8 43 55.8
MD17G1014200 Malus domestica HOM05D000135 ORTHO05D000816 9.0e-07 57.8 42 61.9
Prupe.5G152700 Prunus persica HOM05D000135 ORTHO05D000816 9.0e-07 57.8 42 61.9
Sabra16G0213700 Salix brachista HOM05D000135 ORTHO05D000816 9.0e-07 57.8 43 51.2
Sabra16G0213800 Salix brachista HOM05D000135 ORTHO05D000816 9.0e-07 57.8 43 51.2
CiPaw.05G177300 Carya illinoinensis HOM05D000135 ORTHO05D000816 1.2e-06 57.4 48 54.2
CiPaw.06G007300 Carya illinoinensis HOM05D000135 ORTHO05D000816 1.2e-06 57.4 48 54.2
Lj4g0011466 Lotus japonicus HOM05D000135 ORTHO05D000816 1.2e-06 57.4 40 62.5
AUR62037653 Chenopodium quinoa HOM05D000135 ORTHO05D000816 1.5e-06 57.0 49 59.2
Eucgr.B00125 Eucalyptus grandis HOM05D000135 ORTHO05D000816 1.5e-06 57.0 44 61.4
FvH4_5g08060 Fragaria vesca HOM05D000135 ORTHO05D000816 1.5e-06 57.0 46 56.5
FAN18G3513 Fragaria x ananassa HOM05D000135 ORTHO05D000816 1.5e-06 57.0 46 56.5
Lalb_Chr08g0237071 Lupinus albus HOM05D000135 ORTHO05D000816 1.5e-06 57.0 42 57.1
RcHm_v2.0_Chr7g0190421 Rosa chinensis HOM05D000135 ORTHO05D000816 1.5e-06 57.0 40 62.5
Thecc.08G097200 Theobroma cacao HOM05D000135 ORTHO05D000816 1.5e-06 57.0 54 48.1
MSTRG.3087 Avicennia marina HOM05D000135 ORTHO05D000816 2.0e-06 56.6 45 57.8
CSS0033756 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000816 2.0e-06 56.6 46 54.3
CiPaw.05G177400 Carya illinoinensis HOM05D000135 ORTHO05D000816 2.0e-06 56.6 49 51.0
Glyma.17G128900 Glycine max HOM05D000135 ORTHO05D000816 2.0e-06 56.6 42 57.1
RcHm_v2.0_Chr2g0175201 Rosa chinensis HOM05D000135 ORTHO05D000816 2.0e-06 56.6 42 59.5
GSVIVG01010383001 Vitis vinifera HOM05D000135 ORTHO05D000816 2.0e-06 56.6 45 57.8
Actinidia05909 Actinidia chinensis HOM05D000135 ORTHO05D000816 2.6e-06 56.2 48 52.1
Cpa.g.sc36.92 Carica papaya HOM05D000135 ORTHO05D000816 2.6e-06 56.2 52 55.8
FAN02G0421 Fragaria x ananassa HOM05D000135 ORTHO05D000816 2.6e-06 56.2 42 59.5
Glyma.19G088200 Glycine max HOM05D000135 ORTHO05D000816 2.6e-06 56.2 44 56.8
Lalb_Chr22g0360481 Lupinus albus HOM05D000135 ORTHO05D000816 2.6e-06 56.2 44 54.5
MBI02_g10682_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 2.6e-06 56.2 55 49.1
MBI03_g33916_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 2.6e-06 56.2 60 43.3
DCAR_013352 Daucus carota HOM05D000135 ORTHO05D000816 3.4e-06 55.8 58 50.0
Nn3g16507 Nelumbo nucifera HOM05D000135 ORTHO05D000816 3.4e-06 55.8 43 53.5
Rhsim10G0008000 Rhododendron simsii HOM05D000135 ORTHO05D000816 3.4e-06 55.8 50 50.0
GSVIVG01010385001 Vitis vinifera HOM05D000135 ORTHO05D000816 3.4e-06 55.8 45 55.6
MELO3C026214.2 Cucumis melo HOM05D000135 ORTHO05D000816 4.5e-06 55.5 47 53.2
CsaV3_1G000650 Cucumis sativus L. HOM05D000135 ORTHO05D000816 4.5e-06 55.5 42 59.5
DCAR_015089 Daucus carota HOM05D000135 ORTHO05D000816 4.5e-06 55.5 46 52.2
Eucgr.B00123 Eucalyptus grandis HOM05D000135 ORTHO05D000816 4.5e-06 55.5 44 61.4
Eucgr.B00124 Eucalyptus grandis HOM05D000135 ORTHO05D000816 4.5e-06 55.5 44 59.1
MD09G1013600 Malus domestica HOM05D000135 ORTHO05D000816 4.5e-06 55.5 46 56.5
Oeu000733.1 Olea europaea HOM05D000135 ORTHO05D000816 4.5e-06 55.5 36 63.9
Oeu035215.1 Olea europaea HOM05D000135 ORTHO05D000816 4.5e-06 55.5 42 57.1
Sed0012230 Sechium edule HOM05D000135 ORTHO05D000816 4.5e-06 55.5 42 59.5
THA.LOC104812026 Tarenaya hassleriana HOM05D000135 ORTHO05D000816 4.5e-06 55.5 52 50.0
unitig_748.g7057 Utricularia gibba HOM05D000135 ORTHO05D000816 4.5e-06 55.5 50 52.0
GSVIVG01008516001 Vitis vinifera HOM05D000135 ORTHO05D000816 4.5e-06 55.5 43 58.1
Thhalv10003430m.g Eutrema salsugineum HOM05D000135 ORTHO05D000816 5.8e-06 55.1 64 43.8
FAN04G2593 Fragaria x ananassa HOM05D000135 ORTHO05D000816 5.8e-06 55.1 40 60.0
FAN08G0825 Fragaria x ananassa HOM05D000135 ORTHO05D000816 5.8e-06 55.1 40 60.0
FAN13G0461 Fragaria x ananassa HOM05D000135 ORTHO05D000816 5.8e-06 55.1 40 60.0
Lj4g0025643 Lotus japonicus HOM05D000135 ORTHO05D000816 7.6e-06 54.7 39 59.0
Oeu035216.1 Olea europaea HOM05D000135 ORTHO05D000816 7.6e-06 54.7 44 54.5
QL10p004084 Quercus lobata HOM05D000135 ORTHO05D000816 7.6e-06 54.7 43 58.1
BcaB07g31080 Brassica carinata HOM05D000135 ORTHO05D000816 9.9e-06 54.3 53 49.1
BcaC04g21998 Brassica carinata HOM05D000135 ORTHO05D000816 9.9e-06 54.3 52 50.0
A09p19650 Brassica napus HOM05D000135 ORTHO05D000816 9.9e-06 54.3 52 50.0
C09p25010 Brassica napus HOM05D000135 ORTHO05D000816 9.9e-06 54.3 52 50.0
BolC9t55394H Brassica oleracea HOM05D000135 ORTHO05D000816 9.9e-06 54.3 52 50.0
BraA09t37576Z Brassica rapa HOM05D000135 ORTHO05D000816 9.9e-06 54.3 52 50.0
CANSAT64G0052 Cannabis sativa HOM05D000135 ORTHO05D000816 9.9e-06 54.3 39 59.0
Ca_00913_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000816 9.9e-06 54.3 42 54.8
Ca_29979_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000816 9.9e-06 54.3 42 54.8
MELO3C008204.2 Cucumis melo HOM05D000135 ORTHO05D000816 9.9e-06 54.3 40 62.5
CsaV3_2G034220 Cucumis sativus L. HOM05D000135 ORTHO05D000816 9.9e-06 54.3 40 62.5
ECA233G5320 Erigeron canadensis HOM05D000225 ORTHO05D001817 9.9e-06 54.3 61 49.2
Glyma.04G194800 Glycine max HOM05D000135 ORTHO05D000816 9.9e-06 54.3 40 60.0
TPR.G30002 Trifolium pratense HOM05D000135 ORTHO05D000816 9.9e-06 54.3 42 54.8


User provided reference genes

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