Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 6.2e-205 717.2 364 100.0
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 1.8e-204 715.7 364 99.5
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 2.0e-203 712.2 364 98.9
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 3.1e-188 661.8 372 90.9
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 2.6e-182 642.1 371 87.1
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 2.6e-182 642.1 371 87.9
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.2e-176 623.2 399 81.2
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 7.7e-171 604.0 366 85.2
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.0e-170 603.6 386 82.9
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 2.3e-167 592.4 400 78.5
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.7e-157 559.7 362 76.2
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 1.7e-157 559.7 362 74.9
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 5.4e-156 554.7 374 72.5
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 1.6e-155 553.1 362 74.3
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 2.0e-155 552.7 362 73.5
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 3.5e-155 552.0 362 74.3
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 2.9e-154 548.9 362 73.5
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.5e-153 545.8 356 78.7
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 5.5e-153 544.7 365 74.8
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.1e-152 541.2 362 72.4
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 6.1e-152 541.2 362 71.8
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.0e-152 540.8 362 72.4
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 6.8e-151 537.7 362 71.0
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 5.7e-150 534.6 363 71.6
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 1.3e-149 533.5 362 72.4
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 2.2e-149 532.7 362 72.1
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 2.8e-149 532.3 372 70.2
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 4.9e-149 531.6 362 70.4
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.3e-149 531.2 362 71.0
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 1.1e-148 530.4 356 73.9
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 2.4e-148 529.3 418 65.6
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 3.1e-148 528.9 363 70.2
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 5.4e-148 528.1 362 70.7
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 7.0e-148 527.7 362 73.2
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 9.2e-148 527.3 362 72.4
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 2.0e-147 526.2 362 69.6
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 2.7e-147 525.8 362 71.3
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 4.5e-147 525.0 362 69.9
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 1.0e-146 523.9 363 70.0
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 1.0e-146 523.9 362 69.6
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 3.8e-146 521.9 356 71.3
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 5.0e-146 521.5 362 70.2
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 5.0e-146 521.5 362 71.0
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 8.6e-146 520.8 362 69.9
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.9e-145 519.6 359 70.5
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 4.3e-145 518.5 361 69.8
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 4.3e-145 518.5 361 69.8
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 4.3e-145 518.5 363 68.9
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 7.3e-145 517.7 362 70.7
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 9.5e-145 517.3 363 70.8
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 3.6e-144 515.4 361 69.3
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 4.7e-144 515.0 359 69.9
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 6.1e-144 514.6 362 70.2
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.0e-143 511.9 387 66.4
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 6.8e-143 511.1 361 69.0
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 1.2e-142 510.4 361 69.0
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 1.5e-142 510.0 361 68.7
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 1.5e-142 510.0 361 69.3
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 2.0e-142 509.6 363 69.4
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 2.0e-142 509.6 353 72.5
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 2.0e-142 509.6 353 72.5
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.0e-142 509.6 387 66.1
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 2.6e-142 509.2 361 69.0
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 2.6e-142 509.2 358 69.6
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 3.4e-142 508.8 361 68.7
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 5.8e-142 508.1 319 77.1
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 9.8e-142 507.3 387 65.9
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 1.7e-141 506.5 359 70.2
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 2.2e-141 506.1 361 68.4
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 2.9e-141 505.8 362 66.9
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 4.9e-141 505.0 361 68.4
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 8.3e-141 504.2 362 69.1
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 2.4e-140 502.7 362 66.6
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 2.4e-140 502.7 359 69.6
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 3.2e-140 502.3 362 67.7
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 5.4e-140 501.5 362 66.6
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 9.2e-140 500.7 362 66.3
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 2.0e-139 499.6 367 70.3
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 1.7e-138 496.5 350 71.4
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 2.3e-138 496.1 394 64.5
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 3.0e-138 495.7 350 70.6
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 1.5e-137 493.4 350 70.6
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 4.3e-137 491.9 361 66.2
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 2.8e-136 489.2 360 68.1
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 4.4e-134 481.9 364 67.9
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 5.8e-134 481.5 365 67.1
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 5.8e-134 481.5 365 67.1
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 4.9e-133 478.4 359 67.4
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 1.0e-130 470.7 319 72.1
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 1.3e-130 470.3 361 66.5
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 5.1e-130 468.4 362 65.5
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 1.1e-129 467.2 319 71.8
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 1.5e-129 466.8 353 64.6
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.3e-129 465.7 362 65.2
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 3.3e-129 465.7 361 65.1
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 6.2e-128 461.5 362 62.7
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 8.9e-127 457.6 362 61.9
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 2.9e-125 452.6 378 62.4
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 7.1e-124 448.0 357 62.7
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 9.2e-124 447.6 359 61.6
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 2.7e-123 446.0 362 63.8
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 5.1e-122 441.8 295 75.9
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 1.9e-121 439.9 297 74.1
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 7.3e-121 438.0 294 71.8
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 1.6e-120 436.8 293 73.7
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 2.0e-118 429.9 332 65.1
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.4e-118 429.1 387 59.4
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 4.8e-112 408.7 299 66.2
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 1.7e-109 400.2 299 68.2
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.0e-106 391.0 288 68.4
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 3.8e-101 372.5 362 55.0
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 2.4e-100 369.8 362 53.6
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.8e-98 363.6 362 55.0
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.8e-98 363.6 286 59.4
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 7.4e-97 358.2 362 50.0
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 4.8e-96 355.5 317 55.8
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 1.8e-95 353.6 361 50.4
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 3.2e-92 342.8 362 52.5
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 1.3e-90 337.4 336 49.1
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 1.8e-90 337.0 365 51.5
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 5.7e-89 332.0 338 50.3
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 9.0e-87 324.7 368 50.0
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 4.3e-81 305.8 272 60.7
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 2.6e-62 243.4 152 73.0
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 7.2e-60 235.3 328 40.2
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 4.4e-49 199.5 137 67.2
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 6.1e-43 179.1 375 31.5
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 8.0e-43 178.7 201 52.2
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 2.7e-38 163.7 126 65.9
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.2e-36 155.6 140 57.1
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 4.7e-35 152.9 336 32.4
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 3.5e-30 136.7 104 69.2
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 3.3e-28 130.2 135 51.1
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 1.4e-26 124.8 117 57.3
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.3e-24 118.2 88 69.3
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.3e-24 118.2 85 68.2
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.9e-24 117.1 85 67.1
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.9e-24 116.3 84 71.4
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 1.2e-22 111.7 90 63.3
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 1.7e-21 107.8 341 23.8
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.0e-21 107.1 80 68.8
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 3.0e-21 107.1 110 50.0
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 5.0e-21 106.3 110 50.0
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.1e-20 105.1 79 68.4
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.5e-20 104.8 79 68.4
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.5e-20 104.8 80 67.5
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.3e-20 103.6 79 67.1
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.3e-20 103.2 79 67.1
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.3e-20 103.2 79 67.1
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.2e-19 99.4 80 66.2
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 4.0e-18 96.7 79 63.3
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.2e-18 96.3 71 69.0
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.9e-18 95.5 80 62.5
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 7.5e-17 92.4 105 53.3
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.4e-15 87.4 102 51.0
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 4.6e-14 83.2 77 61.0
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.0e-13 80.5 57 73.7
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 5.1e-13 79.7 63 63.5
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 4.3e-12 76.6 44 84.1
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.6e-11 74.7 102 45.1
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 1.1e-10 72.0 69 59.4
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 6.4e-08 62.8 53 62.3
Aa31LG5G23020 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.1e-07 62.0 49 71.4
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.1e-07 59.3 44 72.7
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 6.0e-06 56.2 44 68.2


User provided reference genes

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