Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 1.5e-47 192.6 100 100.0
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 1.5e-47 192.6 100 100.0
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 3.4e-44 181.4 100 94.0
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 8.3e-43 176.8 100 92.0
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 2.3e-40 168.7 100 86.0
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 8.9e-37 156.8 101 81.2
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 8.9e-37 156.8 101 81.2
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 2.6e-36 155.2 100 79.0
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 9.9e-36 153.3 100 79.0
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 3.8e-35 151.4 100 76.0
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 8.4e-35 150.2 101 77.2
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 8.4e-35 150.2 100 77.0
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.4e-34 149.4 101 76.2
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 1.2e-33 146.4 100 77.0
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 1.6e-33 146.0 101 78.2
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 2.1e-33 145.6 101 77.2
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 2.1e-33 145.6 100 74.0
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 2.7e-33 145.2 100 79.0
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 7.8e-33 143.7 101 77.2
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 1.3e-32 142.9 96 78.1
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 1.7e-32 142.5 100 71.0
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 3.0e-32 141.7 108 70.4
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 5.6e-31 137.5 95 75.8
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 1.3e-30 136.3 96 74.0
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 2.1e-30 135.6 101 69.3
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 2.8e-30 135.2 103 69.9
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 3.6e-30 134.8 101 74.3
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 1.8e-29 132.5 101 68.3
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 1.8e-29 132.5 99 68.7
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 2.4e-29 132.1 104 70.2
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 3.1e-29 131.7 101 73.3
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 3.1e-29 131.7 96 70.8
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 4.0e-29 131.3 97 68.0
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 4.0e-29 131.3 101 67.3
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 6.9e-29 130.6 103 73.8
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 1.2e-28 129.8 95 65.3
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 1.5e-28 129.4 97 70.1
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 1.5e-28 129.4 99 65.7
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 1.5e-28 129.4 96 70.8
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 2.0e-28 129.0 93 68.8
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 2.0e-28 129.0 99 63.6
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 2.0e-28 129.0 99 67.7
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 2.0e-28 129.0 100 66.0
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 3.4e-28 128.3 100 67.0
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 3.4e-28 128.3 100 68.0
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 3.4e-28 128.3 102 69.6
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 4.4e-28 127.9 97 72.2
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 4.4e-28 127.9 101 66.3
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 7.6e-28 127.1 98 69.4
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 9.9e-28 126.7 97 72.2
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 9.9e-28 126.7 100 65.0
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 1.3e-27 126.3 95 68.4
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 2.2e-27 125.6 99 66.7
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 2.2e-27 125.6 99 65.7
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 2.9e-27 125.2 96 66.7
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 2.9e-27 125.2 96 64.6
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 2.9e-27 125.2 99 63.6
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 3.8e-27 124.8 100 67.0
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 3.8e-27 124.8 102 68.6
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 6.4e-27 124.0 100 65.0
PGSC0003DMG400027010 Solanum tuberosum HOM05D000366 ORTHO05D001950 1.1e-26 123.2 65 96.9
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 1.9e-26 122.5 92 69.6
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 1.9e-26 122.5 95 67.4
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 1.9e-26 122.5 95 67.4
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 2.4e-26 122.1 95 66.3
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 2.4e-26 122.1 97 66.0
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 3.2e-26 121.7 96 64.6
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 3.2e-26 121.7 100 61.0
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 3.2e-26 121.7 95 66.3
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 4.2e-26 121.3 89 65.2
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 5.4e-26 120.9 98 60.2
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 1.2e-25 119.8 97 64.9
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 1.2e-25 119.8 100 63.0
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 1.2e-25 119.8 100 59.0
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 1.6e-25 119.4 96 63.5
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 1.6e-25 119.4 96 62.5
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 1.6e-25 119.4 93 62.4
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 2.1e-25 119.0 97 62.9
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 2.1e-25 119.0 93 63.4
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 2.7e-25 118.6 101 61.4
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 3.5e-25 118.2 96 62.5
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 3.5e-25 118.2 96 62.5
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 3.5e-25 118.2 96 62.5
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 3.5e-25 118.2 95 65.3
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 4.6e-25 117.9 77 74.0
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 6.0e-25 117.5 99 59.6
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 7.8e-25 117.1 100 61.0
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 7.8e-25 117.1 96 61.5
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 7.8e-25 117.1 99 61.6
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.3e-24 116.3 77 79.2
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.3e-24 116.3 77 79.2
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 1.3e-24 116.3 94 61.7
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 3.9e-24 114.8 91 63.7
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 6.6e-24 114.0 94 62.8
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 8.7e-24 113.6 94 60.6
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 1.5e-23 112.8 91 63.7
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 1.5e-23 112.8 91 63.7
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 1.5e-23 112.8 91 63.7
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 1.5e-23 112.8 95 63.2
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 2.5e-23 112.1 93 64.5
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 2.5e-23 112.1 93 62.4
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 4.3e-23 111.3 91 63.7
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 5.6e-23 110.9 96 59.4
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 5.6e-23 110.9 94 59.6
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 1.3e-22 109.8 93 64.5
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 1.3e-22 109.8 93 64.5
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 2.1e-22 109.0 84 63.1
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 3.6e-22 108.2 92 62.0
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 6.2e-22 107.5 93 62.4
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 6.2e-22 107.5 93 62.4
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 1.4e-21 106.3 75 72.0
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 1.8e-21 105.9 93 61.3
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 4.0e-21 104.8 93 55.9
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 5.3e-21 104.4 99 57.6
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 5.3e-21 104.4 64 84.4
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 9.0e-21 103.6 94 57.4
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 1.2e-20 103.2 93 58.1
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 5.8e-20 100.9 68 70.6
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 3.8e-19 98.2 77 62.3
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 1.0e-16 90.1 101 49.5
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 1.3e-16 89.7 75 65.3
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 1.3e-16 89.7 78 66.7
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 1.8e-16 89.4 104 50.0
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 3.0e-16 88.6 104 50.0
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 3.9e-16 88.2 83 54.2
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 3.9e-16 88.2 77 61.0
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 2.5e-15 85.5 76 60.5
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 1.6e-14 82.8 87 55.2
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 1.1e-13 80.1 96 47.9
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 1.1e-13 80.1 91 50.5
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 1.1e-13 80.1 91 51.6
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 4.0e-13 78.2 87 54.0
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 9.0e-13 77.0 90 47.8
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 2.6e-12 75.5 64 57.8
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 3.4e-12 75.1 72 56.9
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 2.2e-11 72.4 61 57.4
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 3.8e-11 71.6 55 65.5
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 4.9e-11 71.2 61 59.0
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 6.5e-11 70.9 57 59.6
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 8.4e-11 70.5 75 48.0
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 1.4e-10 69.7 58 58.6
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 1.6e-09 66.2 50 62.0
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 7.9e-09 63.9 56 60.7
CBR_g34554 Chara braunii HOM05D005070 ORTHO05D005987 1.1e-07 60.1 49 61.2
Pp3c7_6970 Physcomitrium patens HOM05D005070 ORTHO05D005987 9.6e-07 57.0 71 43.7
AagrBONN_evm.TU.Sc2ySwM_362.1955 Anthoceros agrestis HOM05D005070 ORTHO05D005987 1.3e-06 56.6 66 45.5
AagrBONN_evm.TU.Sc2ySwM_344.5276 Anthoceros agrestis HOM05D005070 ORTHO05D005987 1.6e-06 56.2 66 45.5
CSS0046931 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 2.8e-06 55.5 34 82.4


User provided reference genes

Program Settings