Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g029510 Solanum pennellii HOM05D006730 ORTHO05D008189 0.0e+00 1381.7 706 100.0
Solyc06g073160.4 Solanum lycopersicum HOM05D006730 ORTHO05D008189 0.0e+00 1356.3 706 97.7
PGSC0003DMG400026917 Solanum tuberosum HOM05D006730 ORTHO05D008189 0.0e+00 1252.3 706 91.6
Nitab4.5_0001586g0210 Nicotiana tabacum HOM05D006730 ORTHO05D008189 1.3e-278 963.0 639 77.8
Nitab4.5_0001210g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 8.2e-270 933.7 732 68.9
Nitab4.5_0002782g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 1.4e-269 932.9 727 69.2
Peaxi162Scf00180g00519 Petunia axillaris HOM05D006730 ORTHO05D008189 6.3e-254 880.9 641 72.2
Oeu002416.1 Olea europaea HOM05D006730 ORTHO05D008189 6.6e-134 482.3 715 41.0
Actinidia27097 Actinidia chinensis HOM05D006730 ORTHO05D008189 2.0e-114 417.5 714 38.1
MSTRG.27276 Avicennia marina HOM05D006730 ORTHO05D008189 1.4e-112 411.4 680 40.6
TAR633G0487 Trochodendron aralioides HOM05D006730 ORTHO05D008189 5.6e-109 399.4 721 38.3
vmacro21172 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 8.1e-108 395.6 724 37.6
Cfa015217 Carpinus fangiana HOM05D006730 ORTHO05D008189 4.9e-105 386.3 727 37.6
TAR633G1963 Trochodendron aralioides HOM05D006730 ORTHO05D008189 1.3e-102 378.3 719 37.8
vmacro00655 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 1.2e-98 365.2 695 36.3
SGA_v2.0_scaffold94G28623 Striga asiatica HOM05D006730 ORTHO05D008189 5.8e-98 362.8 718 37.2
Cc03_g12540 Coffea canephora HOM05D006730 ORTHO05D008189 3.8e-97 360.1 678 36.7
Prupe.8G045700 Prunus persica HOM05D006730 ORTHO05D008189 1.4e-96 358.2 724 33.6
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 2.4e-96 357.5 666 37.4
QL10p052118 Quercus lobata HOM05D006730 ORTHO05D008189 7.1e-96 355.9 731 35.4
Nn1g09713 Nelumbo nucifera HOM05D006730 ORTHO05D008189 1.7e-94 351.3 718 34.0
Oeu029987.1 Olea europaea HOM05D006730 ORTHO05D008189 6.2e-92 342.8 682 36.7
MD04G1046800 Malus domestica HOM05D006730 ORTHO05D008189 8.1e-92 342.4 727 33.1
Manes.04G048400 Manihot esculenta HOM05D006730 ORTHO05D008189 2.4e-91 340.9 735 35.4
Sc19g0000330 Simmondsia chinensis HOM05D006730 ORTHO05D008189 6.9e-91 339.3 727 34.9
Ciclev10019155m.g Citrus clementina HOM05D006730 ORTHO05D008189 1.7e-89 334.7 721 34.7
Atru.chr4.1340 Acer truncatum HOM05D006730 ORTHO05D008189 3.8e-89 333.6 680 36.6
Potri.017G018300 Populus trichocarpa HOM05D006730 ORTHO05D008189 1.7e-86 324.7 712 36.0
Eucgr.A00038 Eucalyptus grandis HOM05D006730 ORTHO05D008189 1.9e-85 321.2 716 35.9
Cpa.g.sc9.329 Carica papaya HOM05D006730 ORTHO05D008189 1.3e-84 318.5 717 33.9
COL.COLO4_28380 Corchorus olitorius HOM05D006730 ORTHO05D008189 1.6e-84 318.2 693 34.5
Lj3A110T20 Lonicera japonica HOM05D006730 ORTHO05D008189 1.8e-83 314.7 643 36.1
PGR102G2296 Punica granatum HOM05D006730 ORTHO05D008189 4.0e-83 313.5 708 34.5
Thecc.04G171700 Theobroma cacao HOM05D006730 ORTHO05D008189 9.0e-83 312.4 707 34.5
AL7G49300 Arabidopsis lyrata HOM05D006730 ORTHO05D008189 7.6e-82 309.3 716 33.9
Carub.0007s3500 Capsella rubella HOM05D006730 ORTHO05D008189 7.6e-82 309.3 714 33.8
Sed0020880 Sechium edule HOM05D006730 ORTHO05D008189 2.9e-81 307.4 722 32.7
Aa31LG1G25250 Aethionema arabicum HOM05D006730 ORTHO05D008189 4.9e-81 306.6 715 32.2
Sabra17G0012500 Salix brachista HOM05D006730 ORTHO05D008189 4.9e-81 306.6 699 34.3
FvH4_1g27220 Fragaria vesca HOM05D006730 ORTHO05D008189 1.9e-80 304.7 721 34.4
FAN26G1825 Fragaria x ananassa HOM05D006730 ORTHO05D008189 9.3e-80 302.4 712 33.8
Ca_03751_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 1.2e-79 302.0 719 32.3
Haze_01419 Corylus avellana HOM05D006730 ORTHO05D008189 1.6e-79 301.6 644 35.6
Duzib151G0982 Durio zibethinus HOM05D006730 ORTHO05D008189 4.6e-79 300.1 704 33.7
CsaV3_7G002050 Cucumis sativus L. HOM05D006730 ORTHO05D008189 1.8e-78 298.1 714 32.4
FAN19G2476 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.9e-77 294.7 708 33.6
Hma1.2p1_0324F.1_g125720 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 2.5e-77 294.3 580 36.4
Hma1.2p1_3037F.1_g331960 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 4.3e-77 293.5 580 36.4
MELO3C015702.2 Cucumis melo HOM05D006730 ORTHO05D008189 7.4e-77 292.7 718 32.5
THA.LOC104805724 Tarenaya hassleriana HOM05D006730 ORTHO05D008189 1.6e-76 291.6 712 32.7
Glyma.12G050000 Glycine max HOM05D006730 ORTHO05D008189 8.1e-76 289.3 714 31.8
Sabra06G0076300 Salix brachista HOM05D006730 ORTHO05D008189 1.4e-75 288.5 686 33.5
VMungo0720G0522 Vigna mungo HOM05D006730 ORTHO05D008189 5.3e-75 286.6 718 32.7
AT5G40520 Arabidopsis thaliana HOM05D006730 ORTHO05D008189 1.5e-74 285.0 715 33.8
Phvul.011G201600 Phaseolus vulgaris HOM05D006730 ORTHO05D008189 1.5e-74 285.0 718 33.1
Dinv05091 Davidia involucrata HOM05D006730 ORTHO05D008189 2.0e-74 284.6 623 34.8
GSVIVG01038091001 Vitis vinifera HOM05D006730 ORTHO05D008189 2.0e-74 284.6 600 35.7
Lsat_1_v5_gn_5_69460 Lactuca sativa HOM05D006730 ORTHO05D008189 2.2e-73 281.2 701 32.7
CiPaw.01G173600 Carya illinoinensis HOM05D006730 ORTHO05D008189 1.9e-72 278.1 653 35.2
A05p16170 Brassica napus HOM05D006730 ORTHO05D008189 9.3e-72 275.8 712 30.9
BraA05t20528Z Brassica rapa HOM05D006730 ORTHO05D008189 1.2e-71 275.4 712 31.3
TPR.G34183 Trifolium pratense HOM05D006730 ORTHO05D008189 2.1e-71 274.6 735 31.0
ClCG09G018880 Citrullus lanatus HOM05D006730 ORTHO05D008189 3.9e-70 270.4 677 31.5
Ca_07546_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 5.1e-70 270.0 689 31.6
TAR633G2319 Trochodendron aralioides HOM05D006730 ORTHO05D008189 1.5e-69 268.5 536 37.5
Gohir.D02G011000 Gossypium hirsutum HOM05D006730 ORTHO05D008189 1.6e-68 265.0 703 30.4
Psat7g208760 Pisum sativum HOM05D006730 ORTHO05D008189 2.1e-68 264.6 711 32.6
RcHm_v2.0_Chr3g0487611 Rosa chinensis HOM05D006730 ORTHO05D008189 2.8e-68 264.2 728 32.3
Medtr4g068005 Medicago truncatula HOM05D006730 ORTHO05D008189 4.8e-68 263.5 714 30.8
BcaB02g08030 Brassica carinata HOM05D006730 ORTHO05D008189 1.1e-67 262.3 719 30.7
Gorai.005G013400 Gossypium raimondii HOM05D006730 ORTHO05D008189 2.4e-67 261.2 703 30.3
BolC6t36977H Brassica oleracea HOM05D006730 ORTHO05D008189 3.1e-67 260.8 720 30.7
CARHR138600 Cardamine hirsuta HOM05D006730 ORTHO05D008189 3.1e-67 260.8 600 32.2
Lj3g0015132 Lotus japonicus HOM05D006730 ORTHO05D008189 4.1e-67 260.4 709 31.0
Sp7g05120 Schrenkiella parvula HOM05D006730 ORTHO05D008189 4.1e-67 260.4 735 30.9
VMungo0647G1321 Vigna mungo HOM05D006730 ORTHO05D008189 5.3e-67 260.0 711 32.1
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 2.6e-66 257.7 613 31.5
C06p17830 Brassica napus HOM05D006730 ORTHO05D008189 7.6e-66 256.1 744 30.4
BcaC08g44345 Brassica carinata HOM05D006730 ORTHO05D008189 1.3e-65 255.4 709 30.5
AUR62005936 Chenopodium quinoa HOM05D006730 ORTHO05D008189 6.5e-65 253.1 709 29.6
MBI11_g10487_MAGBIO Magnolia biondii HOM05D006730 ORTHO05D008189 3.6e-63 247.3 647 32.3
TWI15G0430 Tripterygium wilfordii HOM05D006730 ORTHO05D008189 3.6e-63 247.3 721 30.9
SGA_v2.0_scaffold36G14479 Striga asiatica HOM05D000061 ORTHO05D008189 6.1e-63 246.5 663 32.3
EL10Ac9g22987 Beta vulgaris HOM05D006730 ORTHO05D008189 5.1e-62 243.4 757 29.6
AUR62028127 Chenopodium quinoa HOM05D006730 ORTHO05D008189 5.1e-62 243.4 702 30.8
arahy.Tifrunner.gnm1.ann1.S6BLSS Arachis hypogaea HOM05D006730 ORTHO05D008189 1.1e-61 242.3 721 30.9
CANSAT56G2182 Cannabis sativa HOM05D006730 ORTHO05D008189 3.3e-61 240.7 721 29.3
Lalb_Chr03g0025971 Lupinus albus HOM05D006730 ORTHO05D008189 2.0e-58 231.5 713 27.9
Lalb_Chr03g0026031 Lupinus albus HOM05D006730 ORTHO05D008189 2.0e-58 231.5 713 27.9
Thhalv10027675m.g Eutrema salsugineum HOM05D006730 ORTHO05D008189 5.5e-56 223.4 715 29.2
arahy.Tifrunner.gnm1.ann1.PF62HI Arachis hypogaea HOM05D006730 ORTHO05D008189 2.7e-55 221.1 705 30.1
Hund25530 Selenicereus undatus HOM05D006730 ORTHO05D008189 3.0e-54 217.6 429 33.8
Gohir.A02G010500 Gossypium hirsutum HOM05D006730 ORTHO05D008189 1.7e-52 211.8 411 36.5
HanXRQChr17g0565921 Helianthus annuus HOM05D006730 ORTHO05D008189 2.8e-52 211.1 428 35.3
CSS0011413 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 4.1e-51 207.2 298 41.9
CDE07G0581 Ceratophyllum demersum HOM05D006730 ORTHO05D008189 2.2e-44 184.9 729 27.2
DCAR_027052 Daucus carota HOM05D006730 ORTHO05D008189 2.8e-44 184.5 379 35.4
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 4.1e-43 180.6 475 29.5
CSS0007333 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 8.5e-41 172.9 296 36.5
ATR0743G243 Amborella trichopoda HOM05D006730 ORTHO05D008189 4.7e-39 167.2 553 29.8
SHI01154 Sapria himalayana HOM05D006730 ORTHO05D008189 2.2e-36 158.3 380 31.8
FAN28G2072 Fragaria x ananassa HOM05D006730 ORTHO05D008189 4.5e-34 150.6 346 33.2
PSO017G5839 Papaver somniferum HOM05D006730 ORTHO05D008189 8.0e-31 139.8 478 29.3
Nitab4.5_0000946g0050 Nicotiana tabacum HOM05D006730 ORTHO05D008189 8.3e-28 129.8 105 66.7
Os09g0103200 Oryza sativa ssp. japonica HOM05D006730 ORTHO05D008189 2.7e-23 114.8 555 24.7
FAN23G1889 Fragaria x ananassa HOM05D006730 ORTHO05D008189 3.0e-22 111.3 569 26.0
PSO063G4508 Papaver somniferum HOM05D006730 ORTHO05D008189 4.0e-22 110.9 351 29.9
FAN28G2984 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.5e-21 109.0 360 27.8
Zm00001eb184290 Zea mays HOM05D006730 ORTHO05D008189 3.7e-20 104.4 428 25.2
Actinidia26680 Actinidia chinensis HOM05D006730 ORTHO05D008189 1.8e-19 102.1 280 30.7
Ah.10g027080 Amaranthus hybridus HOM05D006730 ORTHO05D008189 1.8e-19 102.1 387 27.9
Ah.10g027090 Amaranthus hybridus HOM05D006730 ORTHO05D008189 9.2e-11 73.2 130 35.4
HanXRQChr12g0385981 Helianthus annuus HOM05D006730 ORTHO05D008189 1.3e-09 69.3 102 43.1
SGA_v2.0_scaffold45G17088 Striga asiatica HOM05D001172 ORTHO05D001128 2.5e-08 65.1 97 38.1
Pp3c1_41270 Physcomitrium patens HOM05D026854 ORTHO05D008189 6.2e-07 60.5 381 25.2
Gohir.A02G010550 Gossypium hirsutum HOM05D006730 ORTHO05D008189 1.8e-06 58.9 87 34.5
Dinv05092 Davidia involucrata HOM05D006730 ORTHO05D008189 3.1e-06 58.2 63 49.2


User provided reference genes

Program Settings