Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 9.5e-231 803.1 400 100.0
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 1.5e-223 779.2 420 94.0
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 5.2e-213 744.2 396 93.9
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 3.4e-204 714.9 396 89.4
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 8.4e-187 657.1 396 82.6
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 6.9e-181 637.5 456 72.8
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.0e-168 597.0 510 63.7
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 2.0e-140 503.1 401 62.3
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 1.5e-138 496.9 393 64.6
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 1.9e-138 496.5 389 66.6
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 3.2e-138 495.7 397 62.7
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 2.7e-137 492.7 359 67.7
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 3.6e-137 492.3 359 67.4
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 4.0e-136 488.8 389 61.7
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 2.4e-133 479.6 377 62.9
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 5.4e-133 478.4 386 60.9
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 9.2e-133 477.6 388 61.9
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 3.8e-131 472.2 382 60.2
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 3.6e-129 465.7 386 59.6
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 5.2e-128 461.8 400 57.5
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 3.4e-127 459.1 388 59.3
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 4.4e-127 458.8 382 58.4
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 8.3e-126 454.5 401 58.6
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 7.0e-125 451.4 391 58.1
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 9.2e-125 451.1 402 56.7
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.6e-124 450.3 384 58.3
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 1.9e-122 443.4 389 58.9
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 4.3e-122 442.2 387 58.9
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 5.6e-122 441.8 331 63.7
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 9.5e-122 441.0 386 58.5
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 1.4e-120 437.2 390 58.5
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 2.6e-119 433.0 386 58.0
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 2.9e-118 429.5 390 58.2
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 3.2e-117 426.0 395 56.7
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 6.0e-116 421.8 411 51.3
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 1.3e-115 420.6 384 57.8
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 3.0e-115 419.5 383 52.5
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 5.0e-115 418.7 384 56.5
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 7.3e-114 414.8 384 57.0
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.4e-112 410.6 383 52.7
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 4.0e-112 409.1 383 54.8
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 1.7e-110 403.7 399 52.1
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 3.7e-110 402.5 461 48.8
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 1.6e-108 397.1 394 52.3
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 3.5e-108 396.0 379 55.4
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.3e-107 394.0 389 51.7
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.3e-107 394.0 391 51.2
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.3e-107 393.3 393 53.7
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 1.1e-106 391.0 394 52.5
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 3.3e-106 389.4 395 50.4
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.8e-105 386.3 383 52.2
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 3.6e-105 386.0 388 50.8
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 1.1e-104 384.4 383 54.3
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 5.2e-104 382.1 417 49.6
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 6.8e-104 381.7 362 54.4
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 1.5e-103 380.6 483 44.7
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 3.7e-102 375.9 412 51.0
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 9.2e-101 371.3 363 51.8
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 3.9e-99 365.9 365 50.4
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 1.1e-98 364.4 363 51.5
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 2.5e-98 363.2 384 47.7
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 3.6e-97 359.4 291 64.6
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 1.8e-96 357.1 365 51.8
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 1.8e-96 357.1 365 51.8
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 1.8e-96 357.1 295 64.4
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 1.5e-95 354.0 422 47.4
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 3.4e-95 352.8 365 51.2
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 4.9e-94 349.0 300 59.0
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 1.1e-90 337.8 388 47.9
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 1.5e-90 337.4 229 71.2
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 3.6e-89 332.8 388 47.9
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 1.4e-88 330.9 373 49.3
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 3.8e-86 322.8 399 45.9
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 1.3e-83 314.3 380 42.6
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 3.0e-83 313.2 294 57.1
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 6.6e-83 312.0 319 54.5
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 9.6e-82 308.1 290 55.9
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 9.6e-82 308.1 402 43.5
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 9.6e-82 308.1 292 53.4
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 1.4e-80 304.3 433 41.1
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 7.6e-79 298.5 295 56.3
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 7.6e-79 298.5 213 69.5
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 4.2e-77 292.7 265 57.0
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 3.8e-70 269.6 372 42.7
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 3.2e-69 266.5 264 55.7
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 9.3e-69 265.0 288 45.1
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 7.9e-68 261.9 215 60.0
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 1.8e-67 260.8 281 50.9
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 5.7e-66 255.8 278 52.2
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 3.7e-65 253.1 273 51.6
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 2.4e-64 250.4 265 49.1
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.5e-63 247.7 252 52.4
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 3.4e-63 246.5 252 52.0
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 1.0e-62 245.0 265 53.6
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 3.2e-61 240.0 289 43.9
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 5.5e-61 239.2 294 47.3
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 9.3e-61 238.4 248 52.4
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 7.9e-60 235.3 257 53.3
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 1.0e-59 235.0 265 49.8
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 8.7e-59 231.9 251 50.6
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.5e-58 231.1 251 51.0
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 2.5e-58 230.3 195 58.5
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 4.3e-58 229.6 294 46.9
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 1.6e-57 227.6 251 50.2
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 6.9e-56 222.2 248 52.4
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 9.0e-56 221.9 262 49.6
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 1.3e-54 218.0 260 50.0
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.3e-54 218.0 254 50.4
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 2.9e-54 216.9 260 50.0
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 6.5e-54 215.7 260 49.2
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 6.5e-54 215.7 264 46.6
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 6.5e-54 215.7 295 43.4
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 8.5e-54 215.3 270 47.8
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 4.2e-53 213.0 253 49.0
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 5.5e-53 212.6 267 49.8
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 9.4e-53 211.8 251 49.8
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 1.2e-52 211.5 260 49.2
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 1.2e-52 211.5 213 53.1
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 2.1e-52 210.7 252 48.4
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 3.6e-52 209.9 260 48.8
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 7.9e-52 208.8 260 46.5
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 1.8e-51 207.6 260 48.1
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 3.9e-51 206.5 260 48.1
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 2.6e-50 203.8 261 49.0
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 9.7e-50 201.8 209 53.6
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.4e-48 198.0 198 53.5
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 1.9e-45 187.6 293 38.6
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 2.0e-42 177.6 277 41.5
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 3.3e-42 176.8 178 53.4
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 1.4e-40 171.4 127 67.7
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 4.1e-40 169.9 184 49.5
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 9.1e-40 168.7 283 37.1
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 1.5e-37 161.4 129 65.9
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 2.1e-36 157.5 213 41.8
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 2.6e-34 150.6 169 49.7
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 3.3e-34 150.2 215 41.4
Haze_01447 Corylus avellana HOM05D001295 ORTHO05D005319 1.1e-29 135.2 72 81.9
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 6.1e-28 129.4 257 34.2
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 3.4e-26 123.6 178 46.1
Lalb_Chr14g0372561 Lupinus albus HOM05D001295 ORTHO05D005319 1.8e-24 117.9 64 76.6
Glyma.13G345802 Glycine max HOM05D001295 ORTHO05D005319 1.4e-19 101.7 130 44.6
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 1.2e-18 98.6 68 70.6
Cre16.g668650 Chlamydomonas reinhardtii HOM05D001295 ORTHO05D005319 4.5e-15 86.7 137 37.2
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 1.6e-12 78.2 176 35.2
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 1.0e-11 75.5 103 39.8
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 1.4e-11 75.1 56 73.2
CBR_g21778 Chara braunii HOM05D001295 ORTHO05D005319 5.2e-11 73.2 119 36.1
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.3e-09 68.6 130 36.9
Medtr2g027210 Medicago truncatula HOM05D001295 ORTHO05D005319 1.3e-09 68.6 81 45.7
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 2.9e-09 67.4 94 43.6
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 2.9e-09 67.4 77 48.1


User provided reference genes

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