Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 4.5e-255 884.0 422 100.0
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 7.4e-250 866.7 421 97.9
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 1.1e-240 836.3 422 94.8
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 5.6e-197 691.0 420 79.5
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 8.9e-195 683.7 461 73.3
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 1.5e-181 639.8 361 85.0
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 2.3e-174 615.9 365 80.5
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 1.9e-141 506.5 439 57.9
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 5.8e-138 495.0 446 57.2
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 3.9e-134 482.3 446 55.8
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 4.8e-132 475.3 460 54.3
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 5.0e-129 465.3 426 57.3
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 1.1e-128 464.2 454 54.6
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 1.8e-126 456.8 420 55.5
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 3.0e-126 456.1 453 52.1
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 2.8e-124 449.5 464 51.7
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 4.1e-123 445.7 418 54.5
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 5.3e-123 445.3 422 56.2
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 2.0e-122 443.4 437 52.6
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 4.5e-122 442.2 454 50.9
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 2.9e-121 439.5 459 51.9
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.8e-121 439.1 459 50.8
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 5.0e-121 438.7 444 52.0
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 2.5e-120 436.4 422 52.6
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 4.2e-120 435.6 374 59.1
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 5.5e-120 435.3 459 50.3
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 7.2e-120 434.9 459 51.0
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 7.9e-119 431.4 444 51.1
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 1.8e-118 430.3 424 51.9
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 1.8e-118 430.3 456 50.2
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 1.8e-118 430.3 455 48.6
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 1.8e-118 430.3 472 50.2
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 2.3e-118 429.9 423 52.2
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 3.9e-118 429.1 458 50.9
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 8.8e-118 427.9 483 49.1
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 2.0e-117 426.8 460 49.6
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.3e-117 426.0 460 49.3
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 9.7e-117 424.5 463 49.5
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 1.3e-116 424.1 444 52.5
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 3.7e-116 422.5 458 49.8
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 3.7e-116 422.5 416 52.4
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.8e-116 422.2 454 49.1
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 6.3e-116 421.8 419 51.6
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 1.8e-115 420.2 450 49.1
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 2.4e-115 419.9 469 48.6
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 4.1e-115 419.1 432 51.4
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 4.1e-115 419.1 432 50.7
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 2.0e-114 416.8 450 48.4
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 7.7e-114 414.8 460 49.3
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 7.7e-114 414.8 460 49.3
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 3.2e-112 409.5 422 51.4
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 5.5e-112 408.7 469 48.4
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 1.8e-110 403.7 424 51.7
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 3.0e-110 402.9 419 51.1
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 2.0e-109 400.2 418 50.5
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 2.0e-109 400.2 435 50.3
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 5.7e-109 398.7 417 49.4
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 9.7e-109 397.9 461 46.4
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 1.3e-108 397.5 417 49.4
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 2.8e-108 396.4 453 47.5
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 4.8e-108 395.6 455 45.7
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 4.8e-108 395.6 454 47.4
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 1.1e-107 394.4 455 45.5
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 1.8e-107 393.7 469 45.4
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 2.4e-107 393.3 458 45.2
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 3.1e-107 392.9 453 45.7
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 9.1e-107 391.3 435 48.5
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 9.1e-107 391.3 435 48.5
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 1.0e-105 387.9 385 52.7
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 1.3e-105 387.5 415 49.2
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 8.5e-105 384.8 418 48.1
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 3.2e-104 382.9 437 49.2
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 3.2e-104 382.9 435 47.4
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 2.1e-103 380.2 420 48.1
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 3.6e-103 379.4 429 47.8
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 1.4e-102 377.5 356 52.8
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 2.3e-102 376.7 308 57.5
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 8.8e-102 374.8 330 55.2
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 2.0e-101 373.6 430 47.2
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 1.8e-99 367.1 330 53.6
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 4.1e-99 365.9 431 44.8
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 5.3e-99 365.5 426 47.2
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 1.6e-98 364.0 352 53.7
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 1.5e-96 357.5 425 45.2
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 4.2e-96 355.9 417 46.3
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.4e-94 350.9 485 42.1
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 3.7e-92 342.8 424 44.6
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 1.4e-91 340.9 420 44.8
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 1.8e-91 340.5 427 47.1
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 2.4e-91 340.1 423 45.4
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 4.1e-91 339.3 429 43.8
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 1.6e-90 337.4 425 45.2
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 1.7e-89 334.0 429 44.5
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 2.3e-89 333.6 422 46.4
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 2.8e-87 326.6 407 45.0
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 3.6e-87 326.2 426 44.4
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 8.9e-86 321.6 298 53.4
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 3.5e-82 309.7 437 44.4
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 4.5e-82 309.3 399 43.1
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 3.8e-81 306.2 513 37.6
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.2e-76 290.4 547 33.6
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 3.2e-75 286.6 338 47.0
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 9.2e-75 285.0 428 42.1
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.0e-74 283.9 426 40.1
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 3.6e-71 273.1 434 38.0
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 3.7e-68 263.1 300 49.0
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 6.4e-68 262.3 323 44.6
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 1.3e-65 254.6 340 45.0
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 6.8e-62 242.3 407 35.4
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.0e-61 240.7 425 32.7
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 1.9e-59 234.2 264 49.2
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 8.1e-55 218.8 324 39.5
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 8.1e-55 218.8 492 32.7
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 2.6e-53 213.8 551 28.7
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 5.4e-51 206.1 305 39.3
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 4.7e-47 193.0 244 41.8
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 3.4e-45 186.8 141 64.5
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 4.9e-44 183.0 373 35.9
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 3.3e-40 170.2 160 48.8
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 2.1e-39 167.5 178 51.7
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 3.6e-39 166.8 149 51.7
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 3.1e-38 163.7 164 48.8
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 5.3e-38 162.9 157 49.7
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.2e-37 161.8 139 53.2
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 5.6e-32 142.9 181 41.4
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 7.6e-29 132.5 265 32.1
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 7.1e-27 125.9 82 68.3
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 1.3e-25 121.7 94 61.7
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 4.3e-24 116.7 157 38.9
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 2.7e-18 97.4 165 40.0
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 8.5e-12 75.9 59 57.6
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 5.5e-11 73.2 71 53.5
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 1.2e-10 72.0 52 57.7
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 4.6e-10 70.1 36 86.1
FvH4_7g33361 Fragaria vesca HOM05D006040 ORTHO05D007134 4.1e-06 57.0 83 42.2


User provided reference genes

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