Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 1.1e-66 256.5 127 100.0
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.0e-61 240.0 127 94.5
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.1e-60 236.5 128 91.4
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 1.6e-35 152.9 127 68.5
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 1.3e-29 133.3 126 61.9
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.3e-29 133.3 125 60.0
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.8e-29 132.9 125 60.0
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.8e-29 132.9 125 61.6
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.3e-29 132.5 127 59.1
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 3.0e-29 132.1 126 61.9
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 5.1e-29 131.3 126 61.9
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 2.5e-28 129.0 133 57.1
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 4.3e-28 128.3 128 61.7
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 5.6e-28 127.9 126 59.5
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 9.6e-28 127.1 132 60.6
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 6.2e-27 124.4 130 59.2
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.1e-26 123.6 128 56.2
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 1.1e-26 123.6 127 57.5
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 4.5e-25 118.2 128 53.9
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 5.8e-25 117.9 133 56.4
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 2.2e-24 115.9 129 51.9
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.9e-24 115.5 125 56.0
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.8e-24 115.2 126 55.6
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 4.9e-24 114.8 126 57.9
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 2.5e-23 112.5 128 53.9
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.2e-23 112.1 128 54.7
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 7.1e-23 110.9 124 54.8
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 9.3e-23 110.5 130 53.1
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 1.6e-22 109.8 129 54.3
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.6e-22 109.8 129 51.9
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 2.7e-22 109.0 132 51.5
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 3.0e-21 105.5 127 53.5
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 3.9e-21 105.1 129 51.2
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 3.9e-21 105.1 127 52.8
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 8.7e-21 104.0 127 52.0
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 1.9e-20 102.8 124 47.6
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 3.3e-20 102.1 132 45.5
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 3.3e-20 102.1 124 46.0
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 3.3e-20 102.1 128 50.0
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 7.4e-20 100.9 128 50.8
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 9.7e-20 100.5 127 50.4
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 9.7e-20 100.5 127 53.5
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 1.3e-19 100.1 130 51.5
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 1.3e-19 100.1 137 48.2
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 2.2e-19 99.4 128 50.0
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 2.2e-19 99.4 129 47.3
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 2.8e-19 99.0 131 48.1
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 2.8e-19 99.0 130 50.8
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 3.7e-19 98.6 134 50.7
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 8.2e-19 97.4 131 45.0
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 8.2e-19 97.4 134 45.5
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 8.2e-19 97.4 124 49.2
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.1e-18 97.1 133 47.4
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 2.4e-18 95.9 131 46.6
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 5.3e-18 94.7 131 48.9
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 5.3e-18 94.7 131 49.6
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 6.9e-18 94.4 124 48.4
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 6.9e-18 94.4 130 49.2
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 1.2e-17 93.6 129 45.7
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 1.2e-17 93.6 90 58.9
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 1.2e-17 93.6 90 58.9
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.2e-17 93.6 129 45.7
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 4.5e-17 91.7 127 44.9
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.5e-17 91.7 129 45.7
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 4.5e-17 91.7 131 45.8
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 5.9e-17 91.3 131 45.0
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 7.6e-17 90.9 90 56.7
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 7.6e-17 90.9 128 46.1
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 7.6e-17 90.9 128 46.1
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 7.6e-17 90.9 106 50.9
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 7.6e-17 90.9 82 58.5
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.0e-16 90.5 131 45.8
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 2.2e-16 89.4 129 45.0
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 2.2e-16 89.4 128 45.3
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 2.2e-16 89.4 131 45.0
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.9e-16 89.0 134 43.3
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 2.9e-16 89.0 88 59.1
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 3.8e-16 88.6 128 45.3
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 3.8e-16 88.6 83 60.2
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 5.0e-16 88.2 127 44.9
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 6.5e-16 87.8 83 59.0
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 8.5e-16 87.4 134 47.8
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 8.5e-16 87.4 131 46.6
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 8.5e-16 87.4 126 45.2
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 1.4e-15 86.7 118 47.5
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.9e-15 86.3 114 45.6
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 3.2e-15 85.5 124 50.0
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 4.2e-15 85.1 123 46.3
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 4.2e-15 85.1 126 40.5
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 5.5e-15 84.7 132 43.2
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 5.5e-15 84.7 131 43.5
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 9.4e-15 84.0 139 43.2
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 9.4e-15 84.0 132 42.4
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.2e-14 83.6 132 42.4
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.2e-14 83.6 118 47.5
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.2e-14 83.6 118 47.5
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.2e-14 83.6 118 47.5
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.2e-14 83.6 118 47.5
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 1.6e-14 83.2 129 41.9
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 2.7e-14 82.4 127 43.3
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 3.6e-14 82.0 129 44.2
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 4.6e-14 81.6 131 44.3
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 7.9e-14 80.9 126 46.0
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 1.0e-13 80.5 130 42.3
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 1.4e-13 80.1 83 54.2
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 1.4e-13 80.1 130 45.4
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 1.4e-13 80.1 137 41.6
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 1.8e-13 79.7 131 42.0
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 1.8e-13 79.7 129 38.0
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 2.3e-13 79.3 84 50.0
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 3.0e-13 79.0 130 42.3
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 3.9e-13 78.6 124 44.4
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 3.9e-13 78.6 127 42.5
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 5.1e-13 78.2 124 44.4
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 6.7e-13 77.8 119 43.7
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 8.8e-13 77.4 101 50.5
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 8.8e-13 77.4 132 41.7
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 1.5e-12 76.6 132 42.4
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.5e-12 76.6 131 40.5
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.9e-12 76.3 122 40.2
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.9e-12 76.3 122 40.2
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 3.3e-12 75.5 90 48.9
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 4.3e-12 75.1 83 53.0
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 4.3e-12 75.1 115 44.3
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 4.3e-12 75.1 125 42.4
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 7.4e-12 74.3 116 44.0
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 7.4e-12 74.3 121 39.7
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 7.4e-12 74.3 88 48.9
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 9.7e-12 73.9 124 43.5
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 9.7e-12 73.9 124 43.5
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 1.3e-11 73.6 134 41.8
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 1.7e-11 73.2 118 43.2
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 1.7e-11 73.2 92 45.7
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 2.2e-11 72.8 113 45.1
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 2.2e-11 72.8 120 41.7
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 2.8e-11 72.4 114 46.5
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.8e-11 72.4 125 40.8
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 2.8e-11 72.4 130 41.5
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 2.8e-11 72.4 116 41.4
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 6.3e-11 71.2 90 46.7
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 8.2e-11 70.9 129 41.9
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 1.4e-10 70.1 120 39.2
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 1.4e-10 70.1 82 48.8
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 2.4e-10 69.3 114 43.0
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 3.1e-10 68.9 121 40.5
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 3.1e-10 68.9 86 47.7
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 4.1e-10 68.6 113 45.1
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 5.3e-10 68.2 125 42.4
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 5.3e-10 68.2 125 42.4
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 6.9e-10 67.8 127 40.9
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 6.9e-10 67.8 127 39.4
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 9.1e-10 67.4 126 42.1
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 9.1e-10 67.4 127 41.7
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 1.2e-09 67.0 96 46.9
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 1.2e-09 67.0 96 46.9
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 1.5e-09 66.6 125 41.6
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 1.5e-09 66.6 102 42.2
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.5e-09 66.6 125 40.8
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 2.6e-09 65.9 116 42.2
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 3.4e-09 65.5 126 43.7
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 5.9e-09 64.7 82 46.3
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 7.7e-09 64.3 126 36.5
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.0e-08 63.9 95 45.3
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 1.0e-08 63.9 126 39.7
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 1.0e-08 63.9 126 39.7
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 1.0e-08 63.9 101 44.6
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 1.3e-08 63.5 125 40.8
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 2.9e-08 62.4 126 40.5
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.1e-07 60.5 101 41.6
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.9e-07 59.7 129 37.2
Nitab4.5_0000750g0030 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.5e-07 59.3 51 58.8
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 3.2e-07 58.9 100 39.0
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 4.2e-07 58.5 106 42.5
HanXRQChr05g0137871 Helianthus annuus HOM05D003592 ORTHO05D029303 5.5e-07 58.2 97 37.1
Lsat_1_v5_gn_0_9440 Lactuca sativa HOM05D003592 ORTHO05D029303 7.2e-07 57.8 84 41.7
ECA232G3842 Erigeron canadensis HOM05D003592 ORTHO05D029303 9.4e-07 57.4 102 36.3
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.7e-06 55.8 87 36.8
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 7.9e-06 54.3 83 39.8


User provided reference genes

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