Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 2.2e-32 141.7 74 100.0
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 1.3e-27 125.9 74 86.5
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 4.0e-26 120.9 74 82.4
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 6.9e-26 120.2 74 82.4
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.6e-25 118.2 74 82.4
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.2e-24 115.2 74 81.1
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.4e-23 111.7 75 78.7
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 3.5e-22 107.8 72 76.4
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 4.6e-22 107.5 76 73.7
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 1.3e-21 105.9 74 73.0
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 1.7e-21 105.5 73 75.3
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 1.7e-21 105.5 74 75.7
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.7e-21 105.5 74 73.0
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 1.7e-21 105.5 73 75.3
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.7e-21 105.5 67 77.6
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 1.7e-21 105.5 79 70.9
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 2.3e-21 105.1 74 73.0
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 2.3e-21 105.1 74 73.0
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 2.3e-21 105.1 74 73.0
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 2.3e-21 105.1 74 71.6
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 3.0e-21 104.8 74 73.0
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 3.0e-21 104.8 69 76.8
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 3.0e-21 104.8 77 71.4
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 3.9e-21 104.4 72 73.6
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 3.9e-21 104.4 74 73.0
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 3.9e-21 104.4 73 71.2
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 6.6e-21 103.6 70 78.6
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 6.6e-21 103.6 74 75.7
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 8.7e-21 103.2 71 78.9
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 1.1e-20 102.8 74 73.0
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 1.1e-20 102.8 81 71.6
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 1.1e-20 102.8 71 74.6
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 1.5e-20 102.4 71 74.6
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 1.5e-20 102.4 73 74.0
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 1.9e-20 102.1 74 71.6
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 1.9e-20 102.1 62 80.6
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 2.5e-20 101.7 62 82.3
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 2.5e-20 101.7 71 74.6
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 3.3e-20 101.3 71 74.6
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 3.3e-20 101.3 71 71.8
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 3.3e-20 101.3 73 72.6
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 5.6e-20 100.5 74 71.6
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 5.6e-20 100.5 68 75.0
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 5.6e-20 100.5 73 72.6
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 5.6e-20 100.5 70 72.9
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 7.3e-20 100.1 72 75.0
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 9.6e-20 99.8 69 73.9
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 1.3e-19 99.4 72 72.2
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 1.3e-19 99.4 71 70.4
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 1.3e-19 99.4 71 71.8
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 1.3e-19 99.4 71 71.8
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 1.3e-19 99.4 75 70.7
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 1.3e-19 99.4 74 70.3
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 1.6e-19 99.0 62 75.8
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.1e-19 98.6 60 78.3
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 2.8e-19 98.2 71 70.4
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 2.8e-19 98.2 74 71.6
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 2.8e-19 98.2 73 71.2
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 2.8e-19 98.2 56 94.6
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 2.8e-19 98.2 63 79.4
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 3.6e-19 97.8 74 68.9
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 3.6e-19 97.8 72 69.4
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 4.8e-19 97.4 75 72.0
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 4.8e-19 97.4 71 70.4
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 4.8e-19 97.4 73 71.2
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 6.2e-19 97.1 65 72.3
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 6.2e-19 97.1 74 67.6
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 6.2e-19 97.1 74 66.2
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 1.1e-18 96.3 71 66.2
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 1.1e-18 96.3 75 70.7
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 1.1e-18 96.3 72 66.7
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 1.4e-18 95.9 73 71.2
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 1.8e-18 95.5 60 76.7
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 1.8e-18 95.5 60 78.3
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 1.8e-18 95.5 63 77.8
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 2.4e-18 95.1 60 78.3
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 2.4e-18 95.1 71 70.4
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 2.4e-18 95.1 70 72.9
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 3.1e-18 94.7 72 69.4
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 3.1e-18 94.7 57 78.9
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 3.1e-18 94.7 74 66.2
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 3.1e-18 94.7 73 65.8
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 4.0e-18 94.4 70 71.4
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 4.0e-18 94.4 68 70.6
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 5.3e-18 94.0 59 78.0
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 5.3e-18 94.0 59 78.0
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 5.3e-18 94.0 72 69.4
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 5.3e-18 94.0 73 68.5
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 9.0e-18 93.2 73 68.5
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 9.0e-18 93.2 73 68.5
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 9.0e-18 93.2 59 79.7
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 1.2e-17 92.8 73 69.9
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 1.2e-17 92.8 73 68.5
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 1.2e-17 92.8 58 81.0
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 2.0e-17 92.0 68 72.1
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 2.0e-17 92.0 71 63.4
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 2.0e-17 92.0 73 68.5
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 2.6e-17 91.7 59 78.0
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 2.6e-17 91.7 58 77.6
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 2.6e-17 91.7 74 67.6
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 3.4e-17 91.3 69 69.6
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 3.4e-17 91.3 59 78.0
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 4.5e-17 90.9 67 70.1
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 4.5e-17 90.9 67 70.1
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 5.8e-17 90.5 55 80.0
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 5.8e-17 90.5 59 78.0
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 5.8e-17 90.5 73 65.8
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 5.8e-17 90.5 63 71.4
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 7.6e-17 90.1 59 76.3
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 7.6e-17 90.1 59 76.3
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 7.6e-17 90.1 59 76.3
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 7.6e-17 90.1 69 69.6
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 9.9e-17 89.7 58 81.0
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 9.9e-17 89.7 59 76.3
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 9.9e-17 89.7 59 74.6
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 9.9e-17 89.7 58 77.6
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 1.3e-16 89.4 60 73.3
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 1.3e-16 89.4 74 66.2
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.3e-16 89.4 74 66.2
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.3e-16 89.4 74 66.2
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 1.3e-16 89.4 54 81.5
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 1.7e-16 89.0 58 79.3
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 2.2e-16 88.6 64 68.8
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 2.9e-16 88.2 68 66.2
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 2.9e-16 88.2 69 68.1
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 3.8e-16 87.8 58 75.9
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 3.8e-16 87.8 55 78.2
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.1e-15 86.3 74 64.9
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 1.1e-15 86.3 74 64.9
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 2.4e-15 85.1 59 69.5
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 2.4e-15 85.1 59 69.5
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 2.4e-15 85.1 59 69.5
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 9.3e-15 83.2 62 66.1
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 2.1e-14 82.0 57 73.7
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 7.9e-14 80.1 60 70.0
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 1.5e-12 75.9 72 54.2
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 3.3e-12 74.7 68 54.4
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 5.6e-12 73.9 58 69.0
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 5.6e-12 73.9 58 65.5
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 7.4e-12 73.6 72 52.8
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 9.6e-12 73.2 68 54.4
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 9.6e-12 73.2 68 54.4
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 1.3e-11 72.8 56 67.9
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 1.3e-11 72.8 71 54.9
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 1.6e-11 72.4 59 66.1
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 2.1e-11 72.0 77 51.9
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 3.7e-11 71.2 53 67.9
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 6.2e-11 70.5 40 90.0
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 2.4e-10 68.6 63 58.7
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.4e-10 68.6 63 58.7
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 2.4e-10 68.6 50 70.0
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 3.1e-10 68.2 58 60.3
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 1.2e-09 66.2 68 52.9
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 1.2e-09 66.2 70 44.3
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 1.9e-07 58.9 57 52.6
Lsat_1_v5_gn_1_43120 Lactuca sativa HOM05D004624 ORTHO05D005357 6.0e-06 53.9 47 59.6
Glyma.03G125300 Glycine max HOM05D004624 ORTHO05D005357 7.9e-06 53.5 35 74.3


User provided reference genes

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