Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g028870 Solanum pennellii HOM05D007091 ORTHO05D008768 1.0e-137 493.4 259 100.0
Solyc06g072500.2 Solanum lycopersicum HOM05D007091 ORTHO05D008768 1.6e-133 479.6 259 96.9
CAN.G65.99 Capsicum annuum HOM05D007091 ORTHO05D008768 8.9e-121 437.2 262 88.9
Nitab4.5_0000033g0140 Nicotiana tabacum HOM05D007091 ORTHO05D008768 2.4e-110 402.5 255 83.9
Nitab4.5_0005533g0060 Nicotiana tabacum HOM05D007091 ORTHO05D008768 1.0e-108 397.1 260 81.9
Peaxi162Scf01064g00022 Petunia axillaris HOM05D007091 ORTHO05D008768 1.9e-99 366.3 251 76.1
FAN13G0023 Fragaria x ananassa HOM05D007091 ORTHO05D008768 2.9e-79 299.3 251 63.7
FvH4_5g17800 Fragaria vesca HOM05D007091 ORTHO05D008768 5.4e-78 295.0 251 63.7
RcHm_v2.0_Chr7g0177781 Rosa chinensis HOM05D007091 ORTHO05D008768 2.1e-77 293.1 239 64.9
CSS0046666 Camellia sinensis var. sinensis HOM05D007091 ORTHO05D008768 1.8e-76 290.0 246 64.2
QL09p036643 Quercus lobata HOM05D007091 ORTHO05D008768 3.0e-76 289.3 250 61.2
Cfa020656 Carpinus fangiana HOM05D007091 ORTHO05D008768 3.9e-76 288.9 253 60.9
vmacro18668 Vaccinium macrocarpon HOM05D007091 ORTHO05D008768 5.1e-76 288.5 258 61.2
CiPaw.15G149800 Carya illinoinensis HOM05D007091 ORTHO05D008768 6.7e-76 288.1 251 61.0
Ciclev10026363m.g Citrus clementina HOM05D007091 ORTHO05D008768 5.6e-75 285.0 243 61.7
Aqoxy3G04057 Aquilegia oxysepala HOM05D007091 ORTHO05D008768 7.4e-75 284.6 247 61.9
Nn4g24542 Nelumbo nucifera HOM05D007091 ORTHO05D008768 1.6e-74 283.5 245 61.2
Dinv32110 Davidia involucrata HOM05D007091 ORTHO05D008768 4.8e-74 282.0 261 61.3
Atru.chr9.1636 Acer truncatum HOM05D007091 ORTHO05D008768 1.4e-73 280.4 249 61.8
Actinidia34668 Actinidia chinensis HOM05D007091 ORTHO05D008768 4.0e-73 278.9 246 62.2
TWI15G0826 Tripterygium wilfordii HOM05D007091 ORTHO05D008768 4.0e-73 278.9 264 59.8
Dinv01447 Davidia involucrata HOM05D007091 ORTHO05D008768 5.3e-73 278.5 256 61.7
FAN04G2000 Fragaria x ananassa HOM05D007091 ORTHO05D008768 3.4e-72 275.8 226 65.0
Hma1.2p1_0844F.1_g227450 Hydrangea macrophylla HOM05D007091 ORTHO05D008768 4.5e-72 275.4 252 61.1
MD06G1234100 Malus domestica HOM05D007091 ORTHO05D008768 5.8e-72 275.0 257 58.8
arahy.Tifrunner.gnm1.ann1.0PBM2M Arachis hypogaea HOM05D007091 ORTHO05D008768 9.9e-72 274.2 240 60.0
Prupe.5G238600 Prunus persica HOM05D007091 ORTHO05D008768 1.3e-71 273.9 255 58.8
TAR629G3120 Trochodendron aralioides HOM05D007091 ORTHO05D008768 1.3e-71 273.9 236 59.7
arahy.Tifrunner.gnm1.ann1.M1K315 Arachis hypogaea HOM05D007091 ORTHO05D008768 2.2e-71 273.1 232 60.3
Cc04_g09250 Coffea canephora HOM05D007091 ORTHO05D008768 6.4e-71 271.6 254 59.4
Potri.012G041400 Populus trichocarpa HOM05D007091 ORTHO05D008768 6.4e-71 271.6 256 59.8
Sabra12G0028500 Salix brachista HOM05D007091 ORTHO05D008768 1.1e-70 270.8 243 61.7
Manes.14G173700 Manihot esculenta HOM05D007091 ORTHO05D008768 3.2e-70 269.2 235 61.7
Eucgr.H00567 Eucalyptus grandis HOM05D007091 ORTHO05D008768 4.2e-70 268.9 259 55.2
TPR.G31708 Trifolium pratense HOM05D007091 ORTHO05D008768 1.2e-69 267.3 251 57.8
Glyma.09G170700 Glycine max HOM05D007091 ORTHO05D008768 1.6e-69 266.9 260 55.4
GSVIVG01000383001 Vitis vinifera HOM05D007091 ORTHO05D008768 4.6e-69 265.4 248 60.9
Ca_20293_v3 Cicer arietinum L. HOM05D007091 ORTHO05D008768 1.3e-68 263.8 243 58.0
Lj2g0019861 Lotus japonicus HOM05D007091 ORTHO05D008768 2.3e-68 263.1 239 60.3
Lalb_Chr22g0353631 Lupinus albus HOM05D007091 ORTHO05D008768 2.3e-68 263.1 252 56.3
MD14G1240800 Malus domestica HOM05D007091 ORTHO05D008768 6.7e-68 261.5 229 62.4
PGSC0003DMG401027044 Solanum tuberosum HOM05D007091 ORTHO05D008768 2.1e-66 256.5 222 68.9
Migut.I00575 Erythranthe guttata HOM05D007091 ORTHO05D008768 4.8e-66 255.4 242 57.4
Haze_18937 Corylus avellana HOM05D007091 ORTHO05D008768 6.2e-66 255.0 227 61.7
ClCG04G012810 Citrullus lanatus HOM05D007091 ORTHO05D008768 1.4e-65 253.8 257 56.0
CDE07G0316 Ceratophyllum demersum HOM05D007091 ORTHO05D008768 1.8e-65 253.4 238 57.6
Os05g0387800 Oryza sativa ssp. japonica HOM05D007091 ORTHO05D008768 1.8e-65 253.4 265 54.3
C08p18530 Brassica napus HOM05D007091 ORTHO05D008768 3.1e-65 252.7 234 57.7
MELO3C001924.2 Cucumis melo HOM05D007091 ORTHO05D008768 4.0e-65 252.3 256 55.5
BcaC07g38895 Brassica carinata HOM05D007091 ORTHO05D008768 5.3e-65 251.9 238 57.6
BolC8t49485H Brassica oleracea HOM05D007091 ORTHO05D008768 5.3e-65 251.9 234 57.3
CANSAT35G2054 Cannabis sativa HOM05D007091 ORTHO05D008768 9.0e-65 251.1 265 54.7
Thhalv10008624m.g Eutrema salsugineum HOM05D007091 ORTHO05D008768 1.2e-64 250.8 242 55.0
Medtr6g072100 Medicago truncatula HOM05D007091 ORTHO05D008768 1.2e-64 250.8 260 55.4
Gohir.D11G227400 Gossypium hirsutum HOM05D007091 ORTHO05D008768 2.6e-64 249.6 249 55.8
A08p30440 Brassica napus HOM05D007091 ORTHO05D008768 7.6e-64 248.1 255 55.3
AL1G30710 Arabidopsis lyrata HOM05D007091 ORTHO05D008768 1.0e-63 247.7 242 55.0
BraA08t34976Z Brassica rapa HOM05D007091 ORTHO05D008768 1.0e-63 247.7 234 56.8
Gorai.007G246600 Gossypium raimondii HOM05D007091 ORTHO05D008768 1.0e-63 247.7 249 55.0
VMungo0464G0064 Vigna mungo HOM05D007091 ORTHO05D008768 1.3e-63 247.3 254 55.1
AT1G18335 Arabidopsis thaliana HOM05D007091 ORTHO05D008768 2.2e-63 246.5 238 55.9
COL.COLO4_24457 Corchorus olitorius HOM05D007091 ORTHO05D008768 2.9e-63 246.1 239 56.1
Gohir.A11G233700 Gossypium hirsutum HOM05D007091 ORTHO05D008768 3.8e-63 245.7 250 55.6
Sp1g16300 Schrenkiella parvula HOM05D007091 ORTHO05D008768 3.8e-63 245.7 236 55.9
Duzib264G1108 Durio zibethinus HOM05D007091 ORTHO05D008768 4.9e-63 245.4 247 55.9
Sc10g0009000 Simmondsia chinensis HOM05D007091 ORTHO05D008768 4.9e-63 245.4 242 55.0
BcaB03g12975 Brassica carinata HOM05D007091 ORTHO05D008768 6.5e-63 245.0 237 56.1
Carub.0001s1796 Capsella rubella HOM05D007091 ORTHO05D008768 1.4e-62 243.8 241 55.2
SEGI_35239 Sequoiadendron giganteum HOM05D007091 ORTHO05D008768 1.9e-62 243.4 254 53.5
Aa31LG7G2780 Aethionema arabicum HOM05D007091 ORTHO05D008768 4.2e-62 242.3 238 55.9
Thecc.03G065800 Theobroma cacao HOM05D007091 ORTHO05D008768 4.2e-62 242.3 247 54.7
Atru.chr9.1624 Acer truncatum HOM05D007091 ORTHO05D008768 5.5e-62 241.9 213 63.4
Lsat_1_v5_gn_2_11841 Lactuca sativa HOM05D007091 ORTHO05D008768 1.2e-61 240.7 248 54.8
PSO384G3314 Papaver somniferum HOM05D007091 ORTHO05D008768 1.8e-60 236.9 236 59.3
HPP92_007322 Vanilla planifolia HOM05D007091 ORTHO05D008768 2.3e-60 236.5 259 53.7
BcaNung05442 Brassica carinata HOM05D005614 ORTHO05D006759 6.7e-60 235.0 232 55.6
CsaV3_1G004900 Cucumis sativus L. HOM05D007091 ORTHO05D008768 1.1e-59 234.2 258 52.7
CARHR018920 Cardamine hirsuta HOM05D007091 ORTHO05D008768 1.9e-59 233.4 239 52.7
Psat1g124480 Pisum sativum HOM05D007091 ORTHO05D008768 5.7e-59 231.9 205 61.0
PSO421G0160 Papaver somniferum HOM05D007091 ORTHO05D008768 1.3e-58 230.7 236 56.8
DCAR_004559 Daucus carota HOM05D007091 ORTHO05D009263 4.8e-58 228.8 269 52.0
ATR0598G099 Amborella trichopoda HOM05D007091 ORTHO05D008768 1.4e-57 227.3 198 61.6
HanXRQChr06g0179681 Helianthus annuus HOM05D007091 ORTHO05D008768 1.8e-57 226.9 260 51.9
Oeu058744.1 Olea europaea HOM05D007091 ORTHO05D008768 1.2e-56 224.2 184 64.1
Zm00001eb256360 Zea mays HOM05D007091 ORTHO05D008768 7.7e-56 221.5 227 55.5
EL10Ac1g00193 Beta vulgaris HOM05D007091 ORTHO05D008768 1.7e-55 220.3 192 59.4
SEGI_03292 Sequoiadendron giganteum HOM05D007091 ORTHO05D008768 6.5e-55 218.4 249 51.8
SMO347G0535 Selaginella moellendorffii HOM05D007091 ORTHO05D008768 5.5e-54 215.3 230 51.7
Mapoly0049s0094 Marchantia polymorpha HOM05D007091 ORTHO05D008768 1.0e-52 211.1 260 46.2
Os02g0772300 Oryza sativa ssp. japonica HOM05D007091 ORTHO05D008768 6.7e-52 208.4 207 55.1
Hund27153 Selenicereus undatus HOM05D007091 ORTHO05D008768 2.0e-51 206.8 245 48.2
SGA_v2.0_scaffold40G15610 Striga asiatica HOM05D007091 ORTHO05D008768 2.0e-51 206.8 197 57.4
Pp3c17_14350 Physcomitrium patens HOM05D007091 ORTHO05D008768 4.1e-49 199.1 202 53.5
Phvul.004G146400 Phaseolus vulgaris HOM05D007091 ORTHO05D008768 2.2e-47 193.4 179 57.0
MSTRG.11241 Avicennia marina HOM05D007091 ORTHO05D008768 3.6e-45 186.0 176 56.8
AagrBONN_evm.TU.Sc2ySwM_228.1246 Anthoceros agrestis HOM05D007091 ORTHO05D008768 4.7e-45 185.7 215 46.5
Sed0004344 Sechium edule HOM05D007091 ORTHO05D008768 4.7e-45 185.7 202 51.5
AUR62004555 Chenopodium quinoa HOM05D007091 ORTHO05D008768 1.8e-44 183.7 173 58.4
SHI19106 Sapria himalayana HOM05D007091 ORTHO05D008768 2.6e-43 179.9 170 60.0
AUR62022670 Chenopodium quinoa HOM05D007091 ORTHO05D008768 3.3e-43 179.5 173 57.2
Pp3c9_11360 Physcomitrium patens HOM05D000137 ORTHO05D000382 2.8e-42 176.4 262 43.9
ECA238G0701 Erigeron canadensis HOM05D007091 ORTHO05D008768 2.0e-40 170.2 173 57.8
Pp3c15_11610 Physcomitrium patens HOM05D000137 ORTHO05D008768 1.3e-39 167.5 264 38.6
Lj9P415T25 Lonicera japonica HOM05D007091 ORTHO05D008768 1.7e-39 167.2 134 67.2
BcaC03g18194 Brassica carinata HOM05D007091 ORTHO05D008768 6.1e-29 132.1 120 56.7
unitig_21.g20331 Utricularia gibba HOM05D007091 ORTHO05D008768 5.7e-27 125.6 106 66.0
MCO05G578 Micromonas commoda HOM05D007091 ORTHO05D008768 1.1e-25 121.3 245 35.9
TWI81G1026 Tripterygium wilfordii HOM05D007091 ORTHO05D008768 5.9e-24 115.5 135 51.9
CBR_g40646 Chara braunii HOM05D007091 ORTHO05D008768 7.5e-19 98.6 113 46.9
BolC2t12316H Brassica oleracea HOM05D007091 ORTHO05D008768 2.2e-18 97.1 92 54.3
C02p62570 Brassica napus HOM05D001735 ORTHO05D001640 1.8e-17 94.0 73 65.8
MCO07G264 Micromonas commoda HOM05D007091 ORTHO05D008768 8.6e-15 85.1 154 35.7
PSO832G1393 Papaver somniferum HOM05D007091 ORTHO05D008768 5.5e-14 82.4 89 52.8
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 8.0e-13 78.6 116 44.0
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 3.0e-12 76.6 72 56.9
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 3.4e-11 73.2 78 53.8
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 3.4e-11 73.2 78 53.8
Cre10.g431450 Chlamydomonas reinhardtii HOM05D007091 ORTHO05D008768 9.8e-11 71.6 202 28.2
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 4.1e-09 66.2 69 49.3


User provided reference genes

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