Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 0.0e+00 2752.2 1442 100.0
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 0.0e+00 2638.2 1440 96.7
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 0.0e+00 2167.5 1451 81.9
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 0.0e+00 1840.1 1447 72.4
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 0.0e+00 1659.0 1363 70.4
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 0.0e+00 1652.1 1302 72.8
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 0.0e+00 1360.9 1164 69.3
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 0.0e+00 1127.5 1526 49.0
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 0.0e+00 1090.9 1509 47.8
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 0.0e+00 1081.2 845 71.7
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 2.3e-287 993.0 1306 49.6
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 3.1e-271 939.5 1378 46.4
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 2.7e-267 926.4 1414 47.5
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 3.0e-266 922.9 1458 45.7
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 2.5e-265 919.8 1496 45.0
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 3.3e-265 919.5 1457 45.5
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 1.2e-264 917.5 1458 45.5
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 8.9e-263 911.4 1451 44.9
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 3.4e-262 909.4 1536 43.8
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 3.8e-261 906.0 1344 47.6
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 6.4e-261 905.2 1534 43.8
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 1.9e-260 903.7 1292 46.3
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 7.1e-260 901.7 1359 45.1
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 1.0e-258 897.9 1429 45.5
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 5.1e-258 895.6 1450 43.7
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 8.7e-258 894.8 1368 45.0
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 7.3e-257 891.7 1465 43.1
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 1.2e-256 891.0 1497 43.9
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 4.0e-255 885.9 1452 44.6
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 4.9e-253 879.0 1440 44.5
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 2.5e-249 866.7 1476 43.2
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 6.7e-242 842.0 1446 44.9
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 3.1e-239 833.2 1449 41.8
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 4.2e-236 822.8 1259 45.1
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 7.1e-236 822.0 1265 45.6
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 7.9e-235 818.5 1430 43.6
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 1.0e-234 818.1 1305 44.0
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 1.3e-234 817.8 1433 42.6
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 3.0e-234 816.6 1429 43.1
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 1.5e-233 814.3 1259 44.8
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 1.8e-231 807.4 1464 42.4
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 1.3e-229 801.2 1248 45.2
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.8e-229 799.7 599 74.6
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 1.9e-228 797.3 1303 43.5
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 9.3e-228 795.0 1435 42.0
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 1.6e-227 794.3 1292 43.4
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 2.7e-227 793.5 1465 42.7
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 4.6e-227 792.7 1239 44.4
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 2.3e-226 790.4 1256 43.7
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 2.4e-223 780.4 1310 42.9
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 1.5e-222 777.7 1258 43.5
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 1.5e-222 777.7 1389 41.0
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 2.6e-222 776.9 1326 43.5
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 2.2e-221 773.9 1222 44.8
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 3.2e-220 770.0 1375 41.4
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 4.6e-219 766.1 1431 40.5
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 6.7e-218 762.3 1293 42.9
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 8.8e-218 761.9 1422 39.5
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 4.3e-217 759.6 1424 39.3
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 1.5e-214 751.1 1298 43.8
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 2.0e-214 750.7 1445 40.7
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 5.0e-213 746.1 1277 42.8
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 6.7e-210 735.7 1299 42.5
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 2.0e-209 734.2 1229 43.5
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 4.4e-209 733.0 1307 42.2
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 5.3e-207 726.1 1208 44.0
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 5.3e-207 726.1 1252 41.9
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 1.5e-206 724.5 1273 41.9
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 1.3e-205 721.5 1430 40.0
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 6.5e-205 719.2 1210 43.6
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 7.7e-198 695.7 1196 43.1
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 6.5e-197 692.6 1405 39.3
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 1.5e-196 691.4 1281 40.7
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 1.3e-192 678.3 1357 40.5
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 6.5e-189 666.0 1451 38.7
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 4.2e-188 663.3 1245 41.4
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 1.4e-186 658.3 1253 40.5
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 2.2e-184 651.0 962 44.4
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 5.5e-180 636.3 1377 38.4
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 3.1e-170 604.0 1320 37.6
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 1.5e-169 601.7 1568 35.4
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 2.0e-169 601.3 1460 35.5
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 7.5e-169 599.4 1216 38.7
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 2.7e-166 590.9 1366 37.7
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 3.6e-163 580.5 1365 37.3
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 1.4e-162 578.6 1275 37.3
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 2.6e-161 574.3 1359 37.0
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 9.8e-161 572.4 1253 37.6
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 1.3e-160 572.0 1351 37.1
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 9.2e-159 565.8 1341 36.7
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 1.2e-158 565.5 1420 34.4
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 3.0e-157 560.8 1256 37.0
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 3.9e-157 560.5 1256 37.0
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 6.6e-157 559.7 1257 36.8
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 1.5e-156 558.5 1367 36.3
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 3.3e-156 557.4 1421 35.8
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 3.0e-149 534.3 1218 36.0
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 7.3e-148 529.6 1454 35.4
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 1.1e-146 525.8 1477 34.4
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 1.1e-140 505.8 1216 35.4
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 3.4e-129 467.6 623 51.2
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 1.3e-128 465.7 661 46.7
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 1.5e-124 452.2 863 39.4
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 1.3e-123 449.1 642 46.7
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 5.8e-113 413.7 1098 33.4
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 2.5e-111 408.3 475 50.1
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 4.3e-100 370.9 521 46.1
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.5e-97 362.5 1264 31.7
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 8.2e-91 340.1 727 37.8
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 8.2e-91 340.1 399 53.1
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 4.5e-89 334.3 488 45.3
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 4.2e-87 327.8 489 42.3
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.3e-83 316.2 663 37.4
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 4.8e-83 314.3 218 77.1
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 1.6e-81 309.3 635 38.4
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 1.3e-80 306.2 727 37.7
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 1.4e-77 296.2 324 51.9
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 1.6e-73 282.7 820 34.0
PGSC0003DMG400026964 Solanum tuberosum HOM05D002890 ORTHO05D005855 1.2e-65 256.5 155 89.0
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 2.7e-65 255.4 294 49.7
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 1.7e-64 252.7 583 34.3
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 8.6e-48 197.2 517 32.5
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 1.2e-46 193.4 518 32.0
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 6.2e-46 191.0 229 47.2
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 3.7e-43 181.8 269 50.6
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 3.2e-42 178.7 863 25.6
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 3.2e-42 178.7 148 58.1
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 1.0e-40 173.7 589 30.4
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 2.8e-38 165.6 278 47.1
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 5.8e-36 157.9 124 76.6
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 7.6e-36 157.5 177 63.3
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 1.1e-34 153.7 236 42.4
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 1.6e-33 149.8 332 34.9
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 2.7e-33 149.1 481 29.7
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 4.6e-33 148.3 720 27.5
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 2.1e-30 139.4 504 31.3
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 8.1e-30 137.5 572 29.4
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 1.6e-25 123.2 499 32.3
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 3.4e-20 105.5 601 25.0
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 1.4e-18 100.1 236 37.7
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.1e-15 90.5 513 28.7
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 2.2e-11 76.3 80 47.5
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 6.4e-11 74.7 55 67.3
Haze_20535 Corylus avellana HOM05D002890 ORTHO05D038830 4.8e-06 58.5 141 33.3


User provided reference genes

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