Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g028430 Solanum pennellii HOM05D005752 ORTHO05D006959 1.7e-55 219.2 115 100.0
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 4.9e-39 164.5 112 84.8
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 2.4e-38 162.2 117 80.3
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 3.9e-28 128.3 113 69.9
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.4e-25 119.0 104 67.3
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 3.9e-20 101.7 115 51.3
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 4.3e-19 98.2 107 54.2
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.6e-18 96.3 115 50.4
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 6.5e-15 84.3 104 51.9
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 1.4e-14 83.2 116 50.0
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 4.2e-14 81.6 120 45.8
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 4.2e-14 81.6 115 47.8
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 4.2e-14 81.6 82 61.0
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 5.5e-14 81.3 106 45.3
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 5.5e-14 81.3 111 50.5
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 7.2e-14 80.9 113 46.9
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 1.6e-13 79.7 108 48.1
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 2.1e-13 79.3 112 45.5
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 3.6e-13 78.6 110 50.9
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 4.6e-13 78.2 108 48.1
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 6.1e-13 77.8 109 46.8
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 7.9e-13 77.4 109 48.6
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 7.9e-13 77.4 106 47.2
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 1.0e-12 77.0 132 40.9
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 1.8e-12 76.3 104 48.1
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 2.3e-12 75.9 102 50.0
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 2.3e-12 75.9 131 40.5
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 3.0e-12 75.5 108 46.3
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 3.0e-12 75.5 106 46.2
Cpa.g.sc628.6 Carica papaya HOM05D005752 ORTHO05D006959 5.1e-12 74.7 115 47.0
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 5.1e-12 74.7 109 44.0
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 1.5e-11 73.2 111 45.9
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 2.0e-11 72.8 108 48.1
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 2.0e-11 72.8 106 46.2
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 2.5e-11 72.4 113 43.4
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 2.5e-11 72.4 122 42.6
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 2.5e-11 72.4 92 48.9
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 4.3e-11 71.6 114 39.5
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 4.3e-11 71.6 107 46.7
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 5.7e-11 71.2 92 48.9
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 5.7e-11 71.2 114 44.7
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 1.7e-10 69.7 105 48.6
HanXRQChr04g0126301 Helianthus annuus HOM05D005752 ORTHO05D006959 1.7e-10 69.7 56 69.6
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 2.8e-10 68.9 118 44.9
FAN13G1309 Fragaria x ananassa HOM05D005752 ORTHO05D006959 2.8e-10 68.9 120 40.8
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 4.8e-10 68.2 118 41.5
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 6.3e-10 67.8 127 41.7
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 6.3e-10 67.8 128 39.1
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 6.3e-10 67.8 111 41.4
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 6.3e-10 67.8 123 43.9
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 1.4e-09 66.6 133 40.6
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 1.4e-09 66.6 108 46.3
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 1.4e-09 66.6 108 45.4
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 1.8e-09 66.2 116 44.8
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 2.4e-09 65.9 123 42.3
BcaC08g45649 Brassica carinata HOM05D005752 ORTHO05D006959 3.1e-09 65.5 114 45.6
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 3.1e-09 65.5 114 45.6
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 4.1e-09 65.1 114 37.7
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 4.1e-09 65.1 133 38.3
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 5.3e-09 64.7 117 41.0
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 5.3e-09 64.7 117 44.4
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 5.3e-09 64.7 114 47.4
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 9.1e-09 63.9 123 43.1
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 9.1e-09 63.9 123 42.3
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 1.2e-08 63.5 158 34.8
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 1.2e-08 63.5 107 43.0
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 1.5e-08 63.2 122 40.2
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 2.0e-08 62.8 122 42.6
Psat1g118960 Pisum sativum HOM05D005752 ORTHO05D006959 2.0e-08 62.8 118 40.7
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 4.5e-08 61.6 76 47.4
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 5.9e-08 61.2 77 44.2
Peaxi162Scf00171g00037 Petunia axillaris HOM05D005752 ORTHO05D006959 7.7e-08 60.8 82 47.6
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 1.0e-07 60.5 72 44.4
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 1.3e-07 60.1 72 45.8
Lalb_Chr14g0370141 Lupinus albus HOM05D005752 ORTHO05D006959 1.3e-07 60.1 74 44.6
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 1.3e-07 60.1 120 37.5
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 1.3e-07 60.1 109 37.6
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 1.7e-07 59.7 106 41.5
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 2.2e-07 59.3 41 65.9
SHI05872 Sapria himalayana HOM05D005752 ORTHO05D006959 2.2e-07 59.3 69 50.7
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 3.8e-07 58.5 124 37.9
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 6.5e-07 57.8 72 44.4
CDE04G3305 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 8.5e-07 57.4 101 38.6
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 8.5e-07 57.4 110 38.2
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 1.4e-06 56.6 120 34.2
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 1.4e-06 56.6 75 41.3
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 1.4e-06 56.6 140 32.1
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 2.5e-06 55.8 108 41.7
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 4.2e-06 55.1 130 33.1


User provided reference genes

Program Settings