Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 8.2e-27 123.2 75 100.0
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 8.2e-27 123.2 75 100.0
PGSC0003DMG400027096 Solanum tuberosum HOM05D003549 ORTHO05D004223 2.6e-25 118.2 75 96.0
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 2.5e-23 111.7 75 82.7
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 2.5e-23 111.7 75 82.7
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 2.3e-21 105.1 75 80.0
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 3.0e-21 104.8 75 78.7
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 3.9e-21 104.4 75 85.3
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 6.7e-21 103.6 75 78.7
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 8.8e-21 103.2 75 84.0
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 3.3e-20 101.3 73 83.6
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 5.7e-20 100.5 75 76.0
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 7.4e-20 100.1 73 78.1
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 1.3e-19 99.4 73 80.8
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 1.7e-19 99.0 75 70.7
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 6.3e-19 97.1 74 77.0
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 6.3e-19 97.1 75 68.0
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 8.2e-19 96.7 75 80.0
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 1.1e-18 96.3 75 73.3
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 1.4e-18 95.9 72 80.6
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.8e-18 95.5 74 75.7
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.8e-18 95.5 74 75.7
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.8e-18 95.5 74 75.7
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 1.8e-18 95.5 75 76.0
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 1.8e-18 95.5 75 78.7
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 2.4e-18 95.1 75 81.3
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 2.4e-18 95.1 75 73.3
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 2.4e-18 95.1 75 73.3
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 2.4e-18 95.1 75 73.3
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 3.1e-18 94.7 75 80.0
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 3.1e-18 94.7 75 77.3
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 4.1e-18 94.4 75 78.7
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 4.1e-18 94.4 75 77.3
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 4.1e-18 94.4 75 81.3
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 5.3e-18 94.0 74 75.7
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 5.3e-18 94.0 74 75.7
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 5.3e-18 94.0 74 73.0
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 5.3e-18 94.0 70 82.9
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 7.0e-18 93.6 75 81.3
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 7.0e-18 93.6 71 78.9
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 9.1e-18 93.2 75 80.0
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 9.1e-18 93.2 75 78.7
Peaxi162Scf00535g00046 Petunia axillaris HOM05D003549 ORTHO05D004223 1.2e-17 92.8 75 69.3
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 1.2e-17 92.8 73 80.8
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 1.6e-17 92.4 75 78.7
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 1.6e-17 92.4 75 73.3
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 1.6e-17 92.4 75 78.7
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 2.0e-17 92.0 76 73.7
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 2.0e-17 92.0 75 72.0
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 2.0e-17 92.0 74 71.6
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 3.5e-17 91.3 71 76.1
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 4.5e-17 90.9 70 67.1
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 4.5e-17 90.9 73 80.8
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 4.5e-17 90.9 74 73.0
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 5.9e-17 90.5 75 73.3
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 5.9e-17 90.5 75 70.7
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 5.9e-17 90.5 75 78.7
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.0e-16 89.7 75 65.3
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 1.3e-16 89.4 69 78.3
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 1.7e-16 89.0 75 70.7
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 1.7e-16 89.0 69 75.4
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 1.7e-16 89.0 74 64.9
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.7e-16 89.0 75 69.3
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 2.2e-16 88.6 75 74.7
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 2.9e-16 88.2 75 76.0
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 2.9e-16 88.2 75 66.7
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 5.0e-16 87.4 76 80.3
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 5.0e-16 87.4 75 80.0
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 6.5e-16 87.0 71 76.1
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 1.1e-15 86.3 75 76.0
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 1.1e-15 86.3 75 76.0
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 1.1e-15 86.3 75 72.0
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 1.5e-15 85.9 75 70.7
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 1.9e-15 85.5 78 66.7
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 1.9e-15 85.5 74 78.4
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 3.2e-15 84.7 75 78.7
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 3.2e-15 84.7 71 73.2
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 3.2e-15 84.7 75 78.7
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 3.2e-15 84.7 75 78.7
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 3.2e-15 84.7 75 73.3
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 3.2e-15 84.7 75 73.3
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 3.2e-15 84.7 72 66.7
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 4.2e-15 84.3 67 71.6
RcHm_v2.0_Chr2g0170951 Rosa chinensis HOM05D003549 ORTHO05D004223 4.2e-15 84.3 67 79.1
Manes.14G067300 Manihot esculenta HOM05D003549 ORTHO05D004223 5.5e-15 84.0 77 76.6
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 5.5e-15 84.0 71 64.8
CAN.G208.13 Capsicum annuum HOM05D003549 ORTHO05D004223 7.2e-15 83.6 48 85.4
COL.COLO4_34052 Corchorus olitorius HOM05D003549 ORTHO05D004223 7.2e-15 83.6 75 77.3
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 7.2e-15 83.6 75 72.0
Sed0001837 Sechium edule HOM05D003549 ORTHO05D004223 7.2e-15 83.6 75 65.3
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 9.4e-15 83.2 75 76.0
ECA246G5096 Erigeron canadensis HOM05D003549 ORTHO05D004223 1.2e-14 82.8 75 77.3
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 1.6e-14 82.4 76 61.8
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.6e-14 82.4 67 76.1
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.6e-14 82.4 67 76.1
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.6e-14 82.4 67 76.1
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.6e-14 82.4 67 76.1
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 2.7e-14 81.6 71 74.6
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 2.7e-14 81.6 69 75.4
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 2.7e-14 81.6 71 66.2
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 3.6e-14 81.3 72 62.5
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 3.6e-14 81.3 67 76.1
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 3.6e-14 81.3 67 76.1
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 3.6e-14 81.3 83 69.9
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 4.7e-14 80.9 71 69.0
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 4.7e-14 80.9 69 73.9
SalBow5G5409 Salvia bowleyana HOM05D003549 ORTHO05D004223 1.4e-13 79.3 73 67.1
Sc04g0001880 Simmondsia chinensis HOM05D003549 ORTHO05D004223 1.4e-13 79.3 77 68.8
Sc12g0005420 Simmondsia chinensis HOM05D003549 ORTHO05D004223 2.3e-13 78.6 73 74.0
CAN.G650.26 Capsicum annuum HOM05D003549 ORTHO05D004223 3.0e-13 78.2 48 79.2
Cpa.g.sc124.38 Carica papaya HOM05D003549 ORTHO05D004223 3.0e-13 78.2 74 74.3
unitig_26.g9627 Utricularia gibba HOM05D000915 ORTHO05D001662 3.0e-13 78.2 73 67.1
Manes.06G103400 Manihot esculenta HOM05D003549 ORTHO05D004223 6.8e-13 77.0 48 83.3
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 1.2e-12 76.3 75 62.7
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 1.2e-12 76.3 75 60.0
HPP92_002194 Vanilla planifolia HOM05D003549 ORTHO05D004223 1.2e-12 76.3 73 68.5
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 1.5e-12 75.9 75 57.3
Zm00001eb332940 Zea mays HOM05D003549 ORTHO05D004223 2.0e-12 75.5 74 59.5
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 2.6e-12 75.1 71 67.6
CARHR049490 Cardamine hirsuta HOM05D003549 ORTHO05D004223 3.4e-12 74.7 70 70.0
Duzib068G0952 Durio zibethinus HOM05D003549 ORTHO05D004223 3.4e-12 74.7 81 65.4
ECA247G2394 Erigeron canadensis HOM05D003549 ORTHO05D004223 4.4e-12 74.3 76 68.4
Gohir.D12G274100 Gossypium hirsutum HOM05D003549 ORTHO05D004223 4.4e-12 74.3 72 68.1
Gorai.008G294500 Gossypium raimondii HOM05D003549 ORTHO05D004223 4.4e-12 74.3 72 68.1
AL2G18990 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 7.5e-12 73.6 76 69.7
AUR62036487 Chenopodium quinoa HOM05D003549 ORTHO05D004223 9.7e-12 73.2 74 67.6
PGR083G2145 Punica granatum HOM05D003549 ORTHO05D004223 9.7e-12 73.2 75 69.3
Thhalv10022469m.g Eutrema salsugineum HOM05D003549 ORTHO05D004223 1.3e-11 72.8 71 66.2
AUR62037088 Chenopodium quinoa HOM05D003549 ORTHO05D004223 2.8e-11 71.6 74 67.6
Os01g0273000 Oryza sativa ssp. japonica HOM05D003549 ORTHO05D004223 2.8e-11 71.6 75 61.3
CANSAT64G1109 Cannabis sativa HOM05D003549 ORTHO05D004223 6.3e-11 70.5 72 66.7
Eucgr.K02857 Eucalyptus grandis HOM05D003549 ORTHO05D004223 6.3e-11 70.5 65 73.8
Sopen12g011080 Solanum pennellii HOM05D003549 ORTHO05D004223 6.3e-11 70.5 45 77.8
unitig_749.g13471 Utricularia gibba HOM05D003549 ORTHO05D004223 6.3e-11 70.5 76 67.1
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 1.1e-10 69.7 71 64.8
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 1.1e-10 69.7 71 64.8
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 1.1e-10 69.7 71 64.8
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 1.1e-10 69.7 71 64.8
Hma1.2p1_0802F.1_g220520 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 1.4e-10 69.3 68 55.9
EL10Ac5g10777 Beta vulgaris HOM05D003549 ORTHO05D004223 1.8e-10 68.9 74 66.2
AUR62008230 Chenopodium quinoa HOM05D003549 ORTHO05D004223 2.4e-10 68.6 74 64.9
HanXRQChr02g0037231 Helianthus annuus HOM05D003549 ORTHO05D004223 2.4e-10 68.6 73 67.1
TPR.G37556 Trifolium pratense HOM05D003549 ORTHO05D004223 2.4e-10 68.6 71 67.6
Atru.chr9.2446 Acer truncatum HOM05D003549 ORTHO05D004223 4.1e-10 67.8 48 70.8
Aqoxy3G00999 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 4.1e-10 67.8 75 62.7
DCAR_021565 Daucus carota HOM05D003549 ORTHO05D004223 4.1e-10 67.8 75 64.0
Gohir.D07G065000 Gossypium hirsutum HOM05D003549 ORTHO05D004223 4.1e-10 67.8 48 72.9
Gorai.001G068500 Gossypium raimondii HOM05D003549 ORTHO05D004223 4.1e-10 67.8 48 72.9
Carub.0003s3029 Capsella rubella HOM05D003549 ORTHO05D004223 7.0e-10 67.0 76 63.2
Cpa.g.sc1914.1 Carica papaya HOM05D003549 ORTHO05D004223 7.0e-10 67.0 44 70.5
AL8G14410 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 1.2e-09 66.2 71 64.8
Lsat_1_v5_gn_1_26640 Lactuca sativa HOM05D000122 ORTHO05D004223 1.6e-09 65.9 72 63.9
Ah.13g075720 Amaranthus hybridus HOM05D003549 ORTHO05D004223 3.5e-09 64.7 75 65.3
BcaB05g23601 Brassica carinata HOM05D003549 ORTHO05D004223 3.5e-09 64.7 75 52.0
CDE10G0156 Ceratophyllum demersum HOM05D003549 ORTHO05D004223 4.5e-09 64.3 75 60.0
Lalb_Chr11g0071151 Lupinus albus HOM05D003549 ORTHO05D004223 1.7e-08 62.4 71 64.8
Aqoxy3G02997 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 2.2e-08 62.0 70 61.4
Rhsim08G0170600 Rhododendron simsii HOM05D003549 ORTHO05D004223 2.2e-08 62.0 76 51.3
A02p23950 Brassica napus HOM05D003549 ORTHO05D004223 2.9e-08 61.6 78 65.4
Gohir.A12G273400 Gossypium hirsutum HOM05D003549 ORTHO05D004223 5.0e-08 60.8 76 60.5
Hma1.2p1_0967F.1_g242260 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 6.5e-08 60.5 80 47.5
Mapoly0025s0126 Marchantia polymorpha HOM05D003549 ORTHO05D004223 6.5e-08 60.5 64 53.1
SMO139G0002 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 1.1e-07 59.7 72 55.6
QL10p012114 Quercus lobata HOM05D003549 ORTHO05D004223 1.9e-07 58.9 124 41.9
C02p37800 Brassica napus HOM05D003549 ORTHO05D004223 3.2e-07 58.2 78 62.8
BolC2t09796H Brassica oleracea HOM05D003549 ORTHO05D004223 3.2e-07 58.2 78 51.3
SMO145G0027 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 3.2e-07 58.2 69 56.5
Hund12012 Selenicereus undatus HOM05D003549 ORTHO05D004223 3.2e-07 58.2 75 60.0
AT5G45010 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 4.2e-07 57.8 71 59.2
Peaxi162Scf00548g00225 Petunia axillaris HOM05D003549 ORTHO05D004223 5.5e-07 57.4 73 45.2
Cfa019097 Carpinus fangiana HOM05D003549 ORTHO05D004223 2.7e-06 55.1 122 42.6
CBR_g8660 Chara braunii HOM05D003549 ORTHO05D004223 2.7e-06 55.1 71 49.3
CDE10G1218 Ceratophyllum demersum HOM05D003549 ORTHO05D004223 6.1e-06 53.9 62 58.1
AT1G64750 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 8.0e-06 53.5 113 44.2
BraA02t07390Z Brassica rapa HOM05D003549 ORTHO05D004223 8.0e-06 53.5 94 53.2


User provided reference genes

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