Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 2.0e-233 812.4 521 100.0
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 1.3e-232 809.7 521 99.2
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 9.5e-223 776.9 521 91.0
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 3.0e-200 702.2 531 87.8
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 1.5e-143 513.8 547 70.9
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 5.2e-136 488.8 541 65.8
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.9e-130 470.3 535 66.2
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 2.6e-127 459.9 547 64.5
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 7.5e-127 458.4 543 62.8
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 3.5e-124 449.5 541 60.6
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 3.5e-124 449.5 538 63.4
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 6.6e-123 445.3 539 62.3
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 1.1e-122 444.5 540 60.6
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 1.9e-122 443.7 540 61.5
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 5.5e-122 442.2 547 65.6
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 9.5e-122 441.4 547 65.6
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.6e-121 440.7 544 64.0
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 2.8e-121 439.9 551 64.6
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 3.6e-121 439.5 541 60.1
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 2.3e-120 436.8 540 64.6
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 5.2e-120 435.6 554 63.9
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 1.2e-119 434.5 549 62.8
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 2.6e-119 433.3 585 58.8
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 5.7e-119 432.2 551 62.8
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 1.3e-118 431.0 546 64.3
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 2.2e-118 430.3 545 66.4
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 4.9e-118 429.1 545 60.6
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.1e-117 427.9 551 63.7
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 3.2e-117 426.4 542 59.4
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 1.2e-116 424.5 551 63.9
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 2.7e-116 423.3 542 59.6
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 5.9e-116 422.2 550 63.5
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 1.0e-115 421.4 533 60.4
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 1.3e-115 421.0 544 59.0
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 1.1e-114 417.9 558 59.5
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 1.9e-114 417.2 529 58.8
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 2.5e-114 416.8 546 60.3
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 3.3e-114 416.4 545 59.3
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 1.2e-113 414.5 548 60.6
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.2e-113 414.5 546 62.5
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 1.6e-113 414.1 548 62.8
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 2.1e-113 413.7 549 57.9
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 1.0e-112 411.4 547 63.4
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.0e-112 411.4 541 60.4
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 3.1e-112 409.8 565 57.0
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 6.8e-112 408.7 548 61.1
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 8.9e-112 408.3 555 60.0
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 2.0e-111 407.1 544 59.2
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.3e-110 404.4 540 61.9
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 1.7e-110 404.1 560 62.0
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 9.2e-109 398.3 545 59.1
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 1.2e-108 397.9 546 62.8
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 1.6e-108 397.5 544 59.2
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 2.0e-108 397.1 546 62.1
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 3.5e-108 396.4 560 63.4
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 2.3e-107 393.7 546 60.4
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 6.6e-107 392.1 544 59.7
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 2.5e-106 390.2 540 58.9
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 3.3e-106 389.8 550 59.3
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 5.6e-106 389.0 567 59.1
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 9.5e-106 388.3 559 54.0
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 9.5e-106 388.3 543 59.7
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 2.1e-105 387.1 580 50.9
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 2.8e-105 386.7 549 61.2
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.1e-104 384.8 539 62.2
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 1.8e-104 384.0 537 56.2
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 2.3e-104 383.6 545 57.8
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 3.1e-104 383.3 547 60.1
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 4.0e-104 382.9 545 60.9
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 5.2e-104 382.5 541 60.6
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 6.8e-104 382.1 545 60.7
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 6.8e-104 382.1 543 58.6
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 8.9e-104 381.7 570 60.9
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 2.6e-103 380.2 554 56.7
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 3.7e-102 376.3 529 60.3
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 3.7e-102 376.3 551 59.3
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 1.4e-101 374.4 547 60.5
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 6.0e-100 369.0 544 61.6
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 1.3e-99 367.9 547 60.9
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.5e-98 364.4 548 59.7
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 3.3e-98 363.2 559 56.9
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 1.4e-96 357.8 544 61.9
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 1.8e-96 357.5 563 56.3
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 4.0e-96 356.3 556 60.1
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 1.2e-95 354.8 568 55.3
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 9.2e-93 345.1 552 55.1
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 9.2e-93 345.1 546 58.8
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 1.6e-92 344.4 550 53.8
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 4.3e-90 336.3 593 50.6
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 1.1e-88 331.6 478 57.5
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 1.1e-88 331.6 536 58.6
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 8.9e-88 328.6 563 49.2
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 1.2e-87 328.2 549 58.3
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 2.2e-86 323.9 542 51.3
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 4.9e-86 322.8 540 55.4
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 1.1e-85 321.6 559 53.0
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 1.9e-85 320.9 551 55.4
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 9.3e-85 318.5 556 51.8
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 2.7e-84 317.0 552 50.4
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 3.9e-83 313.2 580 49.8
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 8.7e-83 312.0 538 52.6
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 1.5e-82 311.2 552 56.5
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 1.5e-82 311.2 530 55.1
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 9.6e-82 308.5 565 53.8
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 6.2e-81 305.8 462 61.0
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 8.1e-81 305.4 541 55.1
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 1.2e-79 301.6 538 50.2
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 1.3e-78 298.1 559 49.4
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 1.7e-78 297.7 556 48.7
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 6.4e-78 295.8 464 55.4
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.3e-75 287.3 227 76.7
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 5.1e-75 286.2 229 80.8
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 1.1e-72 278.5 401 58.9
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 1.5e-71 274.6 591 46.5
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 2.7e-68 263.8 159 84.3
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 3.0e-67 260.4 380 47.1
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 2.5e-66 257.3 584 50.2
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 6.2e-65 252.7 489 56.0
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 9.0e-64 248.8 154 83.8
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 1.4e-61 241.5 480 49.8
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 1.1e-58 231.9 163 74.8
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 2.0e-55 221.1 162 76.5
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 1.9e-53 214.5 520 39.0
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 1.8e-51 208.0 434 48.4
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 4.5e-47 193.4 329 53.5
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 1.7e-41 174.9 352 52.6
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 2.4e-40 171.0 390 48.5
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 3.2e-37 160.6 275 54.2
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 1.4e-32 145.2 235 54.5
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.4e-32 144.4 110 78.2
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 4.1e-32 143.7 502 39.0
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.5e-29 134.4 121 66.9
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 2.7e-28 131.0 129 64.3
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 1.8e-27 128.3 109 68.8
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 1.5e-26 125.2 106 67.9
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 8.2e-25 119.4 81 70.4
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 7.0e-24 116.3 69 81.2
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 5.9e-23 113.2 105 66.7
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 8.0e-20 102.8 164 42.7
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.5e-18 98.6 64 79.7
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 3.7e-17 94.0 103 58.3
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 1.1e-16 92.4 97 61.9
Nitab4.5_0000003g0090 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.0e-14 85.9 110 64.5
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 2.5e-13 81.3 58 79.3
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 2.7e-12 77.8 80 58.8
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 1.0e-11 75.9 46 84.8
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.4e-11 75.5 73 65.8
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.4e-11 75.5 73 65.8
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 4.4e-10 70.5 73 58.9
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 2.3e-06 58.2 157 32.5
SEGI_38811 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 5.0e-06 57.0 80 50.0


User provided reference genes

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