Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g027310 Solanum pennellii HOM05D002504 ORTHO05D007555 1.2e-225 786.2 401 100.0
Solyc06g071010.4 Solanum lycopersicum HOM05D002504 ORTHO05D007555 1.2e-222 776.2 401 98.8
PGSC0003DMG400033071 Solanum tuberosum HOM05D002504 ORTHO05D007555 1.1e-213 746.5 401 94.0
Nitab4.5_0000269g0140 Nicotiana tabacum HOM05D002504 ORTHO05D007555 1.7e-179 632.9 393 78.1
CAN.G628.37 Capsicum annuum HOM05D002504 ORTHO05D007555 5.5e-178 627.9 393 78.9
Nitab4.5_0007394g0010 Nicotiana tabacum HOM05D002504 ORTHO05D007555 4.8e-174 614.8 393 76.1
Peaxi162Scf00013g00007 Petunia axillaris HOM05D002504 ORTHO05D007555 1.4e-160 570.1 396 72.7
Oeu022629.1 Olea europaea HOM05D002504 ORTHO05D007555 7.8e-132 474.6 396 58.1
Cc04_g15430 Coffea canephora HOM05D002504 ORTHO05D007555 2.1e-129 466.5 395 56.7
Dinv19925 Davidia involucrata HOM05D002504 ORTHO05D007332 3.1e-128 462.6 393 59.8
Actinidia34980 Actinidia chinensis HOM05D002504 ORTHO05D007555 2.2e-126 456.4 393 57.0
Dinv09821 Davidia involucrata HOM05D002504 ORTHO05D007555 2.4e-125 453.0 393 58.3
CSS0049848 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 4.1e-125 452.2 393 55.7
CSS0041593 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 2.7e-124 449.5 393 55.5
Actinidia19055 Actinidia chinensis HOM05D002504 ORTHO05D007555 1.5e-122 443.7 373 57.6
Rhsim12G0158700 Rhododendron simsii HOM05D002504 ORTHO05D007555 1.9e-122 443.4 393 55.5
SalBow5G4081 Salvia bowleyana HOM05D002504 ORTHO05D007555 4.6e-116 422.2 395 52.7
Haze_07368 Corylus avellana HOM05D002504 ORTHO05D007555 1.1e-114 417.5 389 52.2
MSTRG.4344 Avicennia marina HOM05D002504 ORTHO05D007555 4.3e-114 415.6 399 51.9
TAR374G0022 Trochodendron aralioides HOM05D002504 ORTHO05D007555 7.3e-114 414.8 393 50.9
Manes.14G075600 Manihot esculenta HOM05D002504 ORTHO05D007555 1.6e-113 413.7 393 53.4
Duzib068G0930 Durio zibethinus HOM05D002504 ORTHO05D007555 3.6e-113 412.5 390 53.1
CiPaw.11G039400 Carya illinoinensis HOM05D002504 ORTHO05D007555 8.9e-112 407.9 376 52.4
Cfa018981 Carpinus fangiana HOM05D002504 ORTHO05D007555 9.9e-111 404.4 389 50.9
TAR622G0915 Trochodendron aralioides HOM05D002504 ORTHO05D007555 1.7e-110 403.7 393 50.6
QL10p015753 Quercus lobata HOM05D002504 ORTHO05D007555 3.8e-110 402.5 389 50.1
COL.COLO4_05456 Corchorus olitorius HOM05D002504 ORTHO05D007555 4.1e-109 399.1 390 51.0
Prupe.5G187600 Prunus persica HOM05D002504 ORTHO05D007555 1.2e-108 397.5 391 49.4
TWI38G0829 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 2.7e-108 396.4 393 49.9
Potri.015G064300 Populus trichocarpa HOM05D002504 ORTHO05D007555 2.3e-107 393.3 393 50.6
QL10p005074 Quercus lobata HOM05D002504 ORTHO05D007555 3.9e-107 392.5 389 48.6
Ciclev10020527m.g Citrus clementina HOM05D002504 ORTHO05D007555 6.6e-107 391.7 390 51.3
RcHm_v2.0_Chr7g0180701 Rosa chinensis HOM05D002504 ORTHO05D007555 1.9e-106 390.2 391 48.1
THA.LOC104808328 Tarenaya hassleriana HOM05D002504 ORTHO05D007555 1.9e-106 390.2 389 47.8
Thecc.03G080700 Theobroma cacao HOM05D002504 ORTHO05D007555 4.3e-106 389.0 390 50.5
Gohir.A11G029531 Gossypium hirsutum HOM05D002504 ORTHO05D007555 9.6e-106 387.9 391 49.9
Gohir.D11G032900 Gossypium hirsutum HOM05D002504 ORTHO05D007555 9.6e-106 387.9 391 50.6
FAN08G0998 Fragaria x ananassa HOM05D002504 ORTHO05D007555 1.2e-105 387.5 392 48.0
FvH4_5g15370 Fragaria vesca HOM05D002504 ORTHO05D007555 2.8e-105 386.3 392 48.0
Gorai.007G035700 Gossypium raimondii HOM05D002504 ORTHO05D007555 4.7e-105 385.6 391 50.1
Lj4g0008726 Lotus japonicus HOM05D002504 ORTHO05D007555 4.7e-105 385.6 389 49.6
Migut.I00134 Erythranthe guttata HOM05D002504 ORTHO05D007555 1.4e-104 384.0 395 49.9
Sabra15G0090100 Salix brachista HOM05D002504 ORTHO05D007555 1.4e-104 384.0 393 48.9
Cpa.g.sc17.218 Carica papaya HOM05D002504 ORTHO05D007555 1.8e-104 383.6 389 48.3
FAN04G1481 Fragaria x ananassa HOM05D002504 ORTHO05D007555 1.8e-104 383.6 392 47.4
FAN18G2091 Fragaria x ananassa HOM05D002504 ORTHO05D007555 3.1e-104 382.9 392 47.4
FAN13G2799 Fragaria x ananassa HOM05D002504 ORTHO05D007555 4.0e-104 382.5 392 47.2
Glyma.17G097600 Glycine max HOM05D002504 ORTHO05D007555 1.2e-103 380.9 394 49.5
DCAR_001955 Daucus carota HOM05D002504 ORTHO05D007555 2.0e-103 380.2 389 49.6
Lsat_1_v5_gn_1_10961 Lactuca sativa HOM05D002504 ORTHO05D007555 4.4e-103 379.0 407 49.1
TWI39G0444 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 7.6e-103 378.3 389 47.8
TPR.G5442 Trifolium pratense HOM05D002504 ORTHO05D007555 9.9e-103 377.9 390 46.7
ClCG01G016490 Citrullus lanatus HOM05D002504 ORTHO05D007555 2.9e-102 376.3 391 48.3
Nn3g16999 Nelumbo nucifera HOM05D002504 ORTHO05D007555 2.9e-102 376.3 388 48.2
VMungo1215G2696 Vigna mungo HOM05D002504 ORTHO05D007555 1.4e-101 374.0 395 47.1
CARHR019500 Cardamine hirsuta HOM05D002504 ORTHO05D007555 4.2e-101 372.5 391 47.1
Eucgr.A00822 Eucalyptus grandis HOM05D002504 ORTHO05D007555 4.2e-101 372.5 394 46.7
Medtr3g078030 Medicago truncatula HOM05D002504 ORTHO05D007555 5.4e-101 372.1 390 46.4
Lalb_Chr12g0196751 Lupinus albus HOM05D002504 ORTHO05D007555 9.3e-101 371.3 396 47.0
arahy.Tifrunner.gnm1.ann1.WQI89G Arachis hypogaea HOM05D002504 ORTHO05D007555 4.6e-100 369.0 393 45.8
arahy.Tifrunner.gnm1.ann1.AAW7H5 Arachis hypogaea HOM05D002504 ORTHO05D007555 7.8e-100 368.2 393 45.8
Phvul.003G192200 Phaseolus vulgaris HOM05D002504 ORTHO05D007555 7.8e-100 368.2 394 46.4
arahy.Tifrunner.gnm1.ann1.A4B6B0 Arachis hypogaea HOM05D002504 ORTHO05D007555 8.7e-99 364.8 389 45.8
arahy.Tifrunner.gnm1.ann1.XHUI7I Arachis hypogaea HOM05D002504 ORTHO05D007555 1.9e-98 363.6 393 45.5
Psat5g114360 Pisum sativum HOM05D002504 ORTHO05D007555 2.5e-98 363.2 389 45.5
Aa31LG7G3620 Aethionema arabicum HOM05D002504 ORTHO05D007555 9.6e-98 361.3 390 47.2
Atru.BG.192.p Acer truncatum HOM05D002504 ORTHO05D007555 1.3e-97 360.9 345 50.4
CsaV3_6G042770 Cucumis sativus L. HOM05D002504 ORTHO05D007555 2.8e-97 359.8 392 46.4
HanXRQChr06g0178031 Helianthus annuus HOM05D002504 ORTHO05D007555 2.8e-97 359.8 390 49.5
Sed0014360 Sechium edule HOM05D002504 ORTHO05D007555 2.8e-97 359.8 392 47.7
TPR.G1695 Trifolium pratense HOM05D002504 ORTHO05D007555 3.6e-97 359.4 390 44.9
MELO3C007518.2 Cucumis melo HOM05D002504 ORTHO05D007555 4.8e-97 359.0 391 46.0
AL1G31390 Arabidopsis lyrata HOM05D002504 ORTHO05D007555 6.2e-97 358.6 394 47.0
DCAR_001117 Daucus carota HOM05D002504 ORTHO05D007555 6.2e-97 358.6 393 47.8
MD14G1195800 Malus domestica HOM05D002504 ORTHO05D007555 6.2e-97 358.6 393 45.3
AT1G18850 Arabidopsis thaliana HOM05D002504 ORTHO05D007555 8.1e-97 358.2 394 46.4
Carub.0001s1850 Capsella rubella HOM05D002504 ORTHO05D007555 5.3e-96 355.5 410 44.1
PSO832G2768 Papaver somniferum HOM05D002504 ORTHO05D007555 2.6e-95 353.2 395 46.8
Thhalv10007868m.g Eutrema salsugineum HOM05D002504 ORTHO05D007555 5.8e-95 352.1 389 46.0
PSO591G0510 Papaver somniferum HOM05D002504 ORTHO05D007555 9.9e-95 351.3 399 46.4
Sc10g0009970 Simmondsia chinensis HOM05D002504 ORTHO05D007555 2.9e-94 349.7 390 46.7
Aqoxy3G03288 Aquilegia oxysepala HOM05D002504 ORTHO05D007555 6.4e-94 348.6 392 46.7
Ca_16191_v3 Cicer arietinum L. HOM05D002504 ORTHO05D007555 6.4e-94 348.6 390 44.1
EL10As5g23568 Beta vulgaris HOM05D002504 ORTHO05D007555 2.4e-93 346.7 399 45.1
CANSAT78G1429 Cannabis sativa HOM05D002504 ORTHO05D007555 4.2e-93 345.9 399 44.1
Ah.02g112510 Amaranthus hybridus HOM05D002504 ORTHO05D007555 1.2e-92 344.4 399 43.4
PGR083G1477 Punica granatum HOM05D002504 ORTHO05D007555 2.1e-92 343.6 396 44.7
A06p15070 Brassica napus HOM05D002504 ORTHO05D007555 3.5e-92 342.8 389 42.7
unitig_52.g17495 Utricularia gibba HOM05D002504 ORTHO05D007555 4.6e-92 342.4 394 45.4
BraA06t24622Z Brassica rapa HOM05D002504 ORTHO05D007555 7.9e-92 341.7 389 42.2
Sp1g16830 Schrenkiella parvula HOM05D002504 ORTHO05D007555 1.9e-90 337.0 417 42.2
AUR62042153 Chenopodium quinoa HOM05D002504 ORTHO05D007555 3.3e-90 336.3 397 45.6
Glyma.05G029300 Glycine max HOM05D002504 ORTHO05D007555 9.6e-90 334.7 391 44.8
AUR62038455 Chenopodium quinoa HOM05D002504 ORTHO05D007555 1.3e-89 334.3 397 44.8
C05p17270 Brassica napus HOM05D002504 ORTHO05D007555 2.6e-87 326.6 416 39.4
BolC5t30427H Brassica oleracea HOM05D002504 ORTHO05D007555 2.6e-87 326.6 416 39.4
MBI03_g18947_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 1.3e-86 324.3 398 41.0
Lj7P436T44 Lonicera japonica HOM05D002504 ORTHO05D007555 4.9e-86 322.4 310 54.5
BcaC05g25787 Brassica carinata HOM05D002504 ORTHO05D007555 6.4e-86 322.0 416 38.7
SGA_v2.0_scaffold56G20046 Striga asiatica HOM05D002504 ORTHO05D007555 7.1e-85 318.5 334 48.5
BcaB07g31903 Brassica carinata HOM05D002504 ORTHO05D007555 1.2e-84 317.8 418 39.5
SHI03355 Sapria himalayana HOM05D002504 ORTHO05D007555 4.6e-84 315.8 401 41.6
Lj5P114T15 Lonicera japonica HOM05D002504 ORTHO05D007555 1.5e-82 310.8 262 58.0
PSO063G6525 Papaver somniferum HOM05D002504 ORTHO05D007555 1.9e-82 310.5 398 41.7
HPP92_004873 Vanilla planifolia HOM05D002504 ORTHO05D007555 1.4e-80 304.3 396 40.2
MBI11_g21312_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 3.4e-79 299.7 397 39.5
Nn5g27262 Nelumbo nucifera HOM05D002504 ORTHO05D007555 3.4e-79 299.7 267 54.3
MBI03_g28522_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 7.1e-77 292.0 397 39.5
CDE07G0237 Ceratophyllum demersum HOM05D002504 ORTHO05D007555 1.2e-76 291.2 374 39.0
ECA236G0190 Erigeron canadensis HOM05D002504 ORTHO05D007332 2.1e-76 290.4 290 52.1
GSVIVG01008049001 Vitis vinifera HOM05D002504 ORTHO05D007555 3.0e-75 286.6 341 44.3
Dinv02434 Davidia involucrata HOM05D002504 ORTHO05D007555 2.7e-60 236.9 180 64.4
ATR1120G016 Amborella trichopoda HOM05D002504 ORTHO05D007555 1.3e-57 228.0 422 34.1
Os01g0112100 Oryza sativa ssp. japonica HOM05D002504 ORTHO05D007555 6.3e-41 172.6 263 35.0
Zm00001eb334590 Zea mays HOM05D002504 ORTHO05D007555 8.0e-36 155.6 270 33.7
Zm00001eb126250 Zea mays HOM05D002504 ORTHO05D007555 2.8e-33 147.1 262 34.0
SEGI_18201 Sequoiadendron giganteum HOM05D002504 ORTHO05D007555 3.7e-33 146.7 402 28.1
Duzib205G0461 Durio zibethinus HOM05D002504 ORTHO05D007555 8.3e-33 145.6 211 42.2
AagrBONN_evm.TU.Sc2ySwM_369.370 Anthoceros agrestis HOM05D002504 ORTHO05D007555 6.3e-25 119.4 294 27.6
Aa31LG9G8990 Aethionema arabicum HOM05D000710 ORTHO05D000336 1.6e-23 114.8 249 30.1
Pp3c1_3820 Physcomitrium patens HOM05D002504 ORTHO05D007555 3.8e-22 110.2 394 23.9
Pp3c1_3850 Physcomitrium patens HOM05D002504 ORTHO05D007555 3.8e-22 110.2 394 23.9
BcaB07g32205 Brassica carinata HOM05D002504 ORTHO05D007555 8.6e-22 109.0 258 28.7
Nn5g27265 Nelumbo nucifera HOM05D002504 ORTHO05D007555 2.5e-21 107.5 426 26.3
Ciclev10033409m.g Citrus clementina HOM05D002504 ORTHO05D007555 3.3e-21 107.1 180 36.7
Mapoly0028s0021 Marchantia polymorpha HOM05D002504 ORTHO05D007555 8.0e-20 102.4 297 23.9
Sabra12G0030300 Salix brachista HOM05D002504 ORTHO05D007555 6.8e-19 99.4 180 36.7
arahy.Tifrunner.gnm1.ann1.8LRZ9F Arachis hypogaea HOM05D002504 ORTHO05D007555 3.0e-14 84.0 101 43.6
SMO367G0630 Selaginella moellendorffii HOM05D002504 ORTHO05D007555 5.0e-14 83.2 354 24.0
CBR_g26261 Chara braunii HOM05D002504 ORTHO05D007555 6.8e-11 72.8 280 26.8
Dinv09820 Davidia involucrata HOM05D000025 ORTHO05D000450 6.4e-09 66.2 93 44.1


User provided reference genes

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