Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 3.3e-182 641.7 362 100.0
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 1.4e-177 626.3 362 97.5
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 9.2e-132 474.2 368 78.3
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 4.7e-128 461.8 369 77.2
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 4.0e-127 458.8 359 78.0
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 1.4e-119 433.7 376 72.3
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 9.9e-102 374.4 329 68.7
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 3.9e-98 362.5 369 64.0
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 6.2e-96 355.1 374 62.8
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 9.9e-86 321.2 371 58.2
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 5.4e-84 315.5 354 59.0
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 4.6e-83 312.4 370 56.5
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 1.6e-80 303.9 368 56.5
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 2.1e-80 303.5 364 54.4
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 6.4e-77 292.0 367 54.8
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 4.2e-76 289.3 370 54.3
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 7.1e-76 288.5 367 54.2
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 9.3e-76 288.1 367 53.1
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 1.2e-75 287.7 372 54.8
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 3.5e-75 286.2 366 54.4
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 3.5e-75 286.2 372 52.7
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 2.3e-74 283.5 386 51.3
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 6.7e-74 282.0 371 53.4
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 1.5e-73 280.8 368 53.0
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 1.5e-73 280.8 351 52.7
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 4.3e-73 279.3 372 52.4
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 4.3e-73 279.3 370 53.0
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 5.6e-73 278.9 342 55.8
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 5.6e-73 278.9 369 52.8
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 9.6e-73 278.1 340 54.4
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 9.6e-73 278.1 361 53.2
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 2.1e-72 276.9 370 52.2
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.1e-71 274.6 367 51.5
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 7.6e-70 268.5 368 50.8
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.3e-69 267.7 374 51.1
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 2.9e-69 266.5 369 52.0
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 4.9e-69 265.8 343 54.2
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 6.5e-69 265.4 375 52.5
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 6.5e-69 265.4 363 50.1
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 6.5e-69 265.4 333 52.9
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 3.2e-68 263.1 369 52.6
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 7.9e-67 258.5 367 48.8
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 1.0e-66 258.1 377 49.9
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 8.7e-66 255.0 370 50.5
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 1.5e-65 254.2 356 51.1
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 1.5e-65 254.2 359 51.0
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 5.7e-65 252.3 355 49.6
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 1.6e-64 250.8 313 53.0
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 1.6e-64 250.8 336 51.8
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 4.8e-64 249.2 364 48.9
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 1.8e-63 247.3 367 49.6
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 5.3e-63 245.7 367 48.5
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 9.0e-63 245.0 368 47.0
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 9.0e-63 245.0 354 50.0
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 4.5e-62 242.7 368 49.2
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 7.6e-62 241.9 373 48.3
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 1.3e-61 241.1 371 49.1
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 8.5e-61 238.4 375 48.8
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 8.5e-61 238.4 374 48.4
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 1.1e-60 238.0 362 47.2
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 1.4e-60 237.7 357 48.2
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 7.2e-60 235.3 357 47.6
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 7.2e-60 235.3 364 47.3
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 9.3e-60 235.0 358 48.6
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 1.2e-59 234.6 370 48.6
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 2.1e-59 233.8 370 46.5
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 2.7e-59 233.4 376 47.9
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 3.6e-59 233.0 370 49.5
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 3.0e-58 229.9 371 46.9
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 3.9e-58 229.6 370 46.2
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 8.8e-58 228.4 368 48.1
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 1.5e-57 227.6 371 48.0
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 2.5e-57 226.9 355 46.8
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 3.3e-57 226.5 374 46.3
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 3.7e-56 223.0 342 48.0
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 1.1e-55 221.5 344 45.1
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 1.8e-55 220.7 372 46.2
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 2.4e-55 220.3 352 47.2
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 3.1e-55 219.9 361 45.7
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 2.2e-53 213.8 363 45.5
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 5.0e-53 212.6 345 45.2
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 2.5e-52 210.3 364 42.3
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 9.4e-52 208.4 352 46.9
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 2.7e-51 206.8 378 45.2
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 6.1e-51 205.7 372 45.7
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 1.0e-50 204.9 385 45.5
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 1.8e-50 204.1 371 44.5
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 2.0e-49 200.7 330 47.0
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 3.3e-49 199.9 354 44.9
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 4.4e-49 199.5 352 44.9
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 9.7e-49 198.4 323 49.5
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 1.7e-48 197.6 365 44.9
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 3.7e-48 196.4 393 42.7
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 4.8e-48 196.1 408 41.4
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 6.3e-48 195.7 364 42.9
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 1.1e-47 194.9 374 42.8
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 1.4e-47 194.5 376 44.4
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 1.5e-46 191.0 360 42.5
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 5.9e-46 189.1 298 47.7
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 1.7e-45 187.6 325 40.9
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 1.7e-45 187.6 374 43.6
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 2.9e-45 186.8 363 44.6
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 1.9e-44 184.1 373 43.4
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 1.9e-44 184.1 377 41.9
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 3.2e-44 183.3 253 49.4
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 1.2e-43 181.4 371 42.0
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 3.6e-43 179.9 373 42.4
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 3.6e-43 179.9 295 48.5
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 3.0e-42 176.8 355 43.4
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 3.3e-41 173.3 368 41.0
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 5.7e-41 172.6 288 43.4
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 1.1e-39 168.3 397 37.8
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 1.4e-39 167.9 358 41.3
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 1.6e-38 164.5 407 39.8
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 1.6e-38 164.5 301 41.5
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 2.0e-38 164.1 353 39.1
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 2.6e-38 163.7 350 38.9
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 1.0e-37 161.8 351 38.5
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 1.3e-37 161.4 375 36.3
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 2.1e-35 154.1 346 41.6
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 7.5e-33 145.6 335 38.2
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 1.4e-31 141.4 345 37.7
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 1.4e-31 141.4 364 35.2
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 2.4e-31 140.6 296 39.9
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 3.1e-31 140.2 267 41.9
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 3.1e-31 140.2 360 36.7
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 3.8e-29 133.3 372 33.1
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 3.8e-29 133.3 340 35.3
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 5.5e-28 129.4 372 34.1
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 5.5e-28 129.4 372 34.1
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 5.5e-28 129.4 372 34.1
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 5.7e-25 119.4 192 48.4
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 1.2e-22 111.7 456 29.8
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 7.5e-09 65.9 92 40.2
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 9.8e-09 65.5 139 31.7
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 1.3e-08 65.1 184 33.2
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 2.2e-08 64.3 121 33.1
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 6.4e-08 62.8 213 24.4
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 8.3e-08 62.4 122 34.4
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 1.9e-07 61.2 209 33.5
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 2.4e-07 60.8 147 30.6
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 7.0e-07 59.3 137 29.9
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 7.0e-07 59.3 149 30.2
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 1.2e-06 58.5 138 31.2
Aqoxy2G01080 Aquilegia oxysepala HOM05D008415 ORTHO05D010601 1.6e-06 58.2 90 38.9
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 1.6e-06 58.2 193 25.9
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 1.6e-06 58.2 85 31.8
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 3.5e-06 57.0 142 29.6
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 4.6e-06 56.6 126 29.4
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 4.6e-06 56.6 114 31.6
CSS0041118 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 6.0e-06 56.2 92 34.8
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 6.0e-06 56.2 234 29.5
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 6.0e-06 56.2 191 30.4
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 7.8e-06 55.8 247 25.9


User provided reference genes

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