Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 0.0e+00 1200.7 685 100.0
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 0.0e+00 1194.5 685 97.4
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 1.5e-305 1052.4 654 91.0
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 2.0e-305 1052.0 686 85.6
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 2.5e-300 1035.0 686 82.9
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 2.8e-299 1031.6 686 82.8
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 2.2e-291 1005.4 688 81.5
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 3.7e-291 1004.6 686 80.0
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 4.1e-290 1001.1 655 83.4
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 5.3e-290 1000.7 686 81.3
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 1.0e-288 996.5 683 80.8
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 2.9e-288 995.0 689 81.1
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 5.0e-288 994.2 686 80.8
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.9e-287 992.3 747 74.3
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 3.2e-287 991.5 686 80.8
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 4.2e-287 991.1 747 74.3
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 5.5e-287 990.7 683 80.2
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 5.5e-287 990.7 683 80.5
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 7.2e-287 990.3 682 79.6
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 9.4e-287 989.9 718 79.0
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 1.2e-286 989.6 686 79.7
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 1.6e-286 989.2 685 80.3
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 2.7e-286 988.4 686 79.7
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 1.0e-285 986.5 685 78.8
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 1.0e-285 986.5 685 78.7
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 1.0e-285 986.5 686 78.9
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 6.7e-285 983.8 691 79.9
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 1.1e-284 983.0 690 78.4
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 2.6e-284 981.9 685 79.0
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 1.7e-283 979.2 692 80.1
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 1.7e-283 979.2 687 79.3
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 4.8e-283 977.6 667 79.5
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 8.2e-283 976.9 665 79.5
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 1.1e-282 976.5 686 79.4
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 1.4e-282 976.1 687 80.3
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 3.1e-282 974.9 686 78.0
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 7.0e-282 973.8 692 77.7
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 1.6e-281 972.6 686 76.7
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 1.6e-281 972.6 665 79.5
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 3.5e-281 971.5 683 78.0
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 5.9e-281 970.7 682 77.3
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 3.8e-280 968.0 668 79.8
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 1.9e-279 965.7 690 76.1
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 3.2e-279 964.9 692 78.6
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 3.2e-279 964.9 691 76.3
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 4.2e-279 964.5 689 76.2
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 4.2e-279 964.5 733 76.3
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 9.4e-279 963.4 685 77.4
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 1.2e-278 963.0 681 79.9
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 2.1e-278 962.2 653 80.6
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.6e-278 961.4 739 76.0
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 4.7e-278 961.1 681 80.0
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 1.0e-277 959.9 685 78.4
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 1.4e-277 959.5 687 76.6
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.3e-277 958.7 681 79.6
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 3.0e-277 958.4 682 79.8
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 5.2e-277 957.6 688 77.3
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 8.8e-277 956.8 691 77.7
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 1.5e-276 956.1 691 75.7
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 2.0e-276 955.7 693 77.6
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 2.6e-276 955.3 687 77.4
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 2.6e-276 955.3 681 78.4
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 3.3e-276 954.9 681 81.1
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 2.2e-275 952.2 666 78.2
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 1.1e-274 949.9 681 77.2
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 1.4e-274 949.5 687 76.7
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 3.1e-274 948.3 691 76.3
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 4.1e-274 948.0 692 77.9
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 4.1e-274 948.0 690 78.1
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 7.0e-274 947.2 729 73.7
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 9.1e-274 946.8 691 76.1
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 1.6e-273 946.0 692 77.7
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 2.7e-273 945.3 686 77.7
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 4.5e-273 944.5 688 78.2
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 4.5e-273 944.5 690 75.5
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 1.3e-272 943.0 686 79.0
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 1.3e-272 943.0 686 77.4
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 1.3e-272 943.0 675 78.4
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 5.0e-272 941.0 729 73.1
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 1.1e-271 939.9 685 78.7
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 2.5e-271 938.7 660 78.5
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 7.2e-271 937.2 700 76.4
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 2.7e-270 935.3 689 77.5
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 8.0e-270 933.7 687 77.0
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 1.4e-269 932.9 691 77.1
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.4e-268 928.3 719 75.7
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 3.4e-268 928.3 687 75.5
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.3e-267 926.4 730 73.7
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 1.7e-267 926.0 681 75.0
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 2.8e-267 925.2 690 77.0
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 2.8e-267 925.2 690 77.0
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 3.5e-265 918.3 722 74.0
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 2.9e-264 915.2 675 73.3
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 3.0e-261 905.2 692 77.3
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 5.2e-261 904.4 686 74.9
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 2.2e-259 899.0 637 79.0
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 5.0e-256 887.9 685 74.9
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 4.9e-251 871.3 680 71.8
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 8.3e-251 870.5 685 71.8
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 1.4e-250 869.8 695 71.4
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 3.2e-250 868.6 575 83.3
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 1.3e-248 863.2 617 79.3
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.9e-247 859.4 685 70.9
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 3.3e-247 858.6 685 71.1
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 2.8e-246 855.5 670 71.8
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 1.1e-245 853.6 685 72.1
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 1.3e-243 846.7 1036 52.2
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 2.1e-241 839.3 651 71.7
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 6.0e-241 837.8 666 71.0
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 6.6e-240 834.3 684 70.6
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 3.4e-236 822.0 658 70.5
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 2.2e-235 819.3 654 70.3
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 8.1e-222 774.2 703 68.6
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 2.3e-216 756.1 667 64.9
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 2.4e-210 736.1 662 63.4
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 6.0e-209 731.5 659 62.5
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 1.8e-208 729.9 553 75.8
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 1.1e-202 710.7 424 99.8
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.9e-202 709.9 680 61.0
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 1.0e-163 581.3 700 52.0
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 4.4e-151 539.3 401 77.1
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 6.3e-150 535.4 368 78.0
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 1.1e-133 481.5 366 80.3
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 6.0e-132 475.7 357 69.2
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 1.5e-127 461.1 570 51.9
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 1.5e-90 338.2 501 46.9
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 4.5e-87 326.6 510 46.3
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 6.2e-81 306.2 709 34.0
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 4.0e-80 303.5 275 65.8
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 4.4e-58 230.3 129 94.6
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 2.6e-50 204.5 562 33.1
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 2.0e-47 194.9 185 60.5
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 3.2e-45 187.6 778 29.2
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.6e-44 185.3 158 64.6
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 2.1e-44 184.9 127 76.4
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.3e-41 175.6 94 95.7
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 5.9e-31 140.2 604 27.3
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 1.2e-28 132.5 93 82.8
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 2.3e-22 111.7 701 21.7
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 5.6e-21 107.1 71 81.7
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 2.6e-18 98.2 743 23.3
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 2.1e-12 78.6 67 65.7
Psat7g009760 Pisum sativum HOM05D004837 ORTHO05D005741 2.2e-09 68.6 43 76.7
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 4.1e-08 64.3 105 45.7
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 2.1e-07 62.0 50 68.0
Cre04.g223900 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 1.0e-06 59.7 779 17.5
Hund02405 Selenicereus undatus HOM05D004837 ORTHO05D005741 2.3e-06 58.5 28 96.4
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 3.9e-06 57.8 78 50.0


User provided reference genes

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