Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 1.6e-106 389.4 200 100.0
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 2.0e-104 382.5 200 98.5
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 6.5e-95 350.9 188 96.8
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 1.1e-78 297.0 201 81.6
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 9.4e-78 293.9 196 81.6
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 1.1e-70 270.4 190 78.4
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 4.1e-57 225.3 199 66.8
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 1.5e-51 206.8 203 59.1
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 2.0e-51 206.5 201 56.7
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 5.9e-48 194.9 197 57.4
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 4.2e-46 188.7 187 51.9
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 4.7e-45 185.3 188 57.4
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 6.1e-45 184.9 185 53.5
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 6.1e-45 184.9 191 53.9
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 8.0e-45 184.5 191 51.3
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 8.0e-45 184.5 193 51.8
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 2.3e-44 183.0 189 56.1
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 4.0e-44 182.2 191 55.5
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 6.8e-44 181.4 203 53.2
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 8.9e-44 181.0 199 53.3
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 1.2e-43 180.6 196 51.0
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 1.2e-43 180.6 197 53.8
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 1.5e-43 180.3 216 50.0
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 2.0e-43 179.9 184 54.9
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 3.4e-43 179.1 187 54.5
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 9.8e-43 177.6 200 53.0
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 1.3e-42 177.2 198 51.0
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 1.7e-42 176.8 198 49.5
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 2.2e-42 176.4 194 51.5
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 2.8e-42 176.0 196 51.5
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 6.3e-42 174.9 190 54.2
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 1.1e-41 174.1 214 50.0
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 1.4e-41 173.7 206 51.0
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 7.0e-41 171.4 199 49.7
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 9.2e-41 171.0 191 52.9
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 1.2e-40 170.6 199 48.7
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 1.6e-40 170.2 196 53.1
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 2.0e-40 169.9 182 52.2
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 3.5e-40 169.1 203 49.3
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 5.9e-40 168.3 196 53.1
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.0e-39 167.5 196 52.6
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 2.9e-39 166.0 151 57.6
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 3.8e-39 165.6 201 47.3
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 8.6e-39 164.5 178 54.5
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.1e-38 164.1 190 50.5
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 1.1e-38 164.1 190 49.5
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 1.5e-38 163.7 143 57.3
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.5e-38 162.9 190 51.1
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 7.3e-38 161.4 190 51.6
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 7.3e-38 161.4 97 76.3
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 9.5e-38 161.0 190 50.5
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 1.6e-37 160.2 164 54.9
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 2.1e-37 159.8 198 47.5
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 2.8e-37 159.5 205 46.3
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 3.6e-37 159.1 103 70.9
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 3.6e-37 159.1 192 49.0
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 3.6e-37 159.1 162 54.3
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 4.7e-37 158.7 199 48.7
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 8.0e-37 157.9 186 48.9
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 8.0e-37 157.9 186 48.9
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 1.0e-36 157.5 226 44.7
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 2.3e-36 156.4 188 49.5
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 5.2e-36 155.2 190 49.5
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 5.2e-36 155.2 194 45.4
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 6.8e-36 154.8 206 45.1
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 2.0e-35 153.3 199 47.7
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 3.4e-35 152.5 192 44.8
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 1.3e-34 150.6 189 48.1
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 1.3e-34 150.6 93 73.1
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 6.4e-34 148.3 182 50.0
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 1.8e-33 146.7 196 51.0
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 1.8e-33 146.7 196 51.0
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 1.8e-33 146.7 196 51.0
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 3.2e-33 146.0 179 49.2
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 3.2e-33 146.0 245 42.4
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 7.0e-33 144.8 196 50.0
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 9.2e-33 144.4 218 46.8
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 9.2e-33 144.4 229 42.4
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 1.2e-32 144.1 227 41.0
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 3.5e-32 142.5 184 51.1
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 3.5e-32 142.5 219 47.5
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 6.0e-32 141.7 210 50.0
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 6.0e-32 141.7 216 49.1
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 6.0e-32 141.7 94 74.5
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 7.8e-32 141.4 117 65.8
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 7.8e-32 141.4 117 65.8
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 1.7e-31 140.2 142 54.2
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 2.3e-31 139.8 117 64.1
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 3.9e-31 139.0 117 63.2
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 6.6e-31 138.3 171 48.5
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 8.6e-31 137.9 196 48.0
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 8.6e-31 137.9 171 48.5
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 1.1e-30 137.5 115 64.3
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 1.9e-30 136.7 216 46.3
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 1.9e-30 136.7 169 48.5
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 4.3e-30 135.6 199 47.7
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 4.3e-30 135.6 199 47.7
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 7.3e-30 134.8 207 45.9
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 7.3e-30 134.8 179 44.1
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 7.3e-30 134.8 182 45.6
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 2.8e-29 132.9 95 64.2
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 4.7e-29 132.1 98 67.3
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 4.7e-29 132.1 98 67.3
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 4.7e-29 132.1 98 67.3
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 6.8e-28 128.3 194 43.8
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 3.4e-27 125.9 198 41.9
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 1.2e-24 117.5 190 45.8
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 3.5e-24 115.9 195 40.5
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 7.8e-24 114.8 97 56.7
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 7.8e-24 114.8 97 56.7
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 3.3e-22 109.4 193 38.3
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.8e-21 106.3 73 63.0
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 2.8e-21 106.3 137 45.3
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 4.7e-21 105.5 195 36.9
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 4.7e-21 105.5 87 57.5
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 3.1e-20 102.8 97 52.6
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 1.2e-16 90.9 87 54.0
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 1.2e-16 90.9 87 54.0
AUR62029856 Chenopodium quinoa HOM05D005829 ORTHO05D007246 3.9e-15 85.9 59 69.5
AUR62025855 Chenopodium quinoa HOM05D005829 ORTHO05D007246 5.1e-15 85.5 58 70.7
THA.LOC104813291 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 7.3e-14 81.6 67 65.7
COL.COLO4_04672 Corchorus olitorius HOM05D005829 ORTHO05D007246 5.8e-11 72.0 141 36.2
Actinidia24460 Actinidia chinensis HOM05D005829 ORTHO05D007246 9.9e-11 71.2 41 68.3
Nn3g17806 Nelumbo nucifera HOM05D005829 ORTHO05D007246 9.9e-11 71.2 143 34.3
SMO241G0040 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 2.1e-08 63.5 50 48.0
SMO232G0029 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 3.5e-08 62.8 53 45.3
CBR_g29305 Chara braunii HOM05D005829 ORTHO05D007246 4.6e-08 62.4 41 56.1
Phvul.004G158500 Phaseolus vulgaris HOM05D005829 ORTHO05D007246 1.5e-06 57.4 196 27.6
BolC2t09172H Brassica oleracea HOM05D000194 ORTHO05D007246 5.6e-06 55.5 71 54.9


User provided reference genes

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