Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g026320 Solanum pennellii HOM05D006376 ORTHO05D008046 7.6e-138 493.8 246 100.0
Solyc06g069030.3 Solanum lycopersicum HOM05D006376 ORTHO05D008046 2.3e-134 482.3 249 97.6
PGSC0003DMG400028793 Solanum tuberosum HOM05D006376 ORTHO05D008046 5.1e-126 454.5 253 92.5
CAN.G423.18 Capsicum annuum HOM05D006376 ORTHO05D008046 7.7e-106 387.5 253 80.2
Peaxi162Scf00332g00023 Petunia axillaris HOM05D006376 ORTHO05D008046 1.0e-105 387.1 255 80.0
Nitab4.5_0001194g0140 Nicotiana tabacum HOM05D006376 ORTHO05D008046 1.3e-105 386.7 230 83.9
Nitab4.5_0012340g0010 Nicotiana tabacum HOM05D006376 ORTHO05D008046 1.3e-105 386.7 254 79.5
Oeu024338.1 Olea europaea HOM05D006376 ORTHO05D008046 6.7e-86 321.2 240 67.1
Cc04_g06670 Coffea canephora HOM05D006376 ORTHO05D008046 1.3e-84 317.0 239 67.4
Manes.14G168100 Manihot esculenta HOM05D006376 ORTHO05D008046 1.3e-81 307.0 250 64.8
Thecc.03G047000 Theobroma cacao HOM05D006376 ORTHO05D008046 1.7e-81 306.6 220 68.2
COL.COLO4_37647 Corchorus olitorius HOM05D006376 ORTHO05D008046 2.9e-81 305.8 248 63.3
Dinv13549 Davidia involucrata HOM05D006376 ORTHO05D008046 5.0e-81 305.1 254 65.0
MSTRG.4559 Avicennia marina HOM05D006376 ORTHO05D008046 8.5e-81 304.3 243 67.1
Gohir.D12G268200 Gossypium hirsutum HOM05D006376 ORTHO05D008046 4.2e-80 302.0 240 65.0
Gorai.008G288200 Gossypium raimondii HOM05D006376 ORTHO05D008046 5.5e-80 301.6 240 65.0
Duzib205G0506 Durio zibethinus HOM05D006376 ORTHO05D008046 1.4e-78 297.0 219 66.2
Actinidia02655 Actinidia chinensis HOM05D006376 ORTHO05D008046 1.8e-78 296.6 247 62.3
Hma1.2p1_0660F.1_g197700 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 3.0e-78 295.8 204 71.1
Rhsim07G0069700 Rhododendron simsii HOM05D006376 ORTHO05D008046 5.2e-78 295.0 236 66.9
CiPaw.15G138400 Carya illinoinensis HOM05D006376 ORTHO05D008046 6.8e-78 294.7 212 70.8
Lj9A422G67 Lonicera japonica HOM05D006376 ORTHO05D008046 2.0e-77 293.1 247 63.6
RhsimUnG0086600 Rhododendron simsii HOM05D006376 ORTHO05D008046 2.0e-77 293.1 238 66.0
TAR629G1456 Trochodendron aralioides HOM05D006376 ORTHO05D008046 3.4e-77 292.4 222 66.7
Rhsim07G0070500 Rhododendron simsii HOM05D006376 ORTHO05D008046 4.4e-77 292.0 239 64.0
CiPaw.15G139000 Carya illinoinensis HOM05D006376 ORTHO05D008046 5.7e-77 291.6 209 69.4
MELO3C017340.2 Cucumis melo HOM05D006376 ORTHO05D008046 5.7e-77 291.6 213 68.5
CsaV3_1G004140 Cucumis sativus L. HOM05D006376 ORTHO05D008046 7.5e-77 291.2 244 62.3
Atru.chr9.942 Acer truncatum HOM05D006376 ORTHO05D008046 3.7e-76 288.9 243 63.8
Ciclev10009207m.g Citrus clementina HOM05D006376 ORTHO05D008046 6.3e-76 288.1 224 65.2
Lsat_1_v5_gn_8_3561 Lactuca sativa HOM05D006376 ORTHO05D008046 6.3e-76 288.1 213 68.5
HanXRQChr05g0144491 Helianthus annuus HOM05D006376 ORTHO05D008046 1.1e-75 287.3 241 61.4
Potri.012G052300 Populus trichocarpa HOM05D006376 ORTHO05D008046 1.1e-75 287.3 257 61.5
PGR083G0770 Punica granatum HOM05D006376 ORTHO05D008046 1.8e-75 286.6 202 70.3
Sabra12G0035600 Salix brachista HOM05D006376 ORTHO05D008046 1.8e-75 286.6 213 67.6
QL10p027316 Quercus lobata HOM05D006376 ORTHO05D008046 2.4e-75 286.2 209 69.9
Hund02337 Selenicereus undatus HOM05D006376 ORTHO05D008046 3.1e-75 285.8 190 73.2
Nn3g18015 Nelumbo nucifera HOM05D006376 ORTHO05D008046 5.4e-75 285.0 210 68.1
DCAR_014774 Daucus carota HOM05D006376 ORTHO05D008046 9.1e-75 284.3 201 71.1
TWI81G0521 Tripterygium wilfordii HOM05D006376 ORTHO05D008046 9.1e-75 284.3 243 61.7
GSVIVG01008377001 Vitis vinifera HOM05D006376 ORTHO05D008046 1.2e-74 283.9 207 68.6
Carub.0001s1773 Capsella rubella HOM05D006376 ORTHO05D008046 2.7e-74 282.7 236 64.0
SGA_v2.0_scaffold171G38935 Striga asiatica HOM05D006376 ORTHO05D008046 2.7e-74 282.7 238 63.0
VMungo0251G1463 Vigna mungo HOM05D006376 ORTHO05D008046 4.5e-74 282.0 224 64.7
Prupe.5G228200 Prunus persica HOM05D006376 ORTHO05D008046 7.7e-74 281.2 249 61.4
TPR.G12760 Trifolium pratense HOM05D006376 ORTHO05D008046 7.7e-74 281.2 204 69.6
Medtr8g106690 Medicago truncatula HOM05D006376 ORTHO05D008046 1.0e-73 280.8 209 67.9
AL1G30420 Arabidopsis lyrata HOM05D006376 ORTHO05D008046 1.3e-73 280.4 198 71.2
Cpa.g.sc3.442 Carica papaya HOM05D006376 ORTHO05D008046 1.3e-73 280.4 251 60.6
Glyma.05G243300 Glycine max HOM05D006376 ORTHO05D008046 2.2e-73 279.6 218 65.1
Psat7g004120 Pisum sativum HOM05D006376 ORTHO05D008046 3.8e-73 278.9 233 62.7
THA.LOC104813912 Tarenaya hassleriana HOM05D006376 ORTHO05D008046 3.8e-73 278.9 216 63.4
CANSAT21G0790 Cannabis sativa HOM05D006376 ORTHO05D008046 5.0e-73 278.5 207 67.1
Thhalv10008687m.g Eutrema salsugineum HOM05D006376 ORTHO05D008046 5.0e-73 278.5 192 69.8
Sc04g0003270 Simmondsia chinensis HOM05D006376 ORTHO05D008046 1.1e-72 277.3 176 76.1
A08p30580 Brassica napus HOM05D006376 ORTHO05D008046 1.5e-72 276.9 194 70.6
AUR62029950 Chenopodium quinoa HOM05D006376 ORTHO05D008046 1.5e-72 276.9 178 73.6
vmacro17793 Vaccinium macrocarpon HOM05D006376 ORTHO05D008046 1.9e-72 276.6 244 59.4
C08p18330 Brassica napus HOM05D006376 ORTHO05D008046 2.5e-72 276.2 193 69.4
BolC8t49467H Brassica oleracea HOM05D006376 ORTHO05D008046 2.5e-72 276.2 193 69.4
ECA233G1742 Erigeron canadensis HOM05D006376 ORTHO05D008046 3.2e-72 275.8 177 75.1
arahy.Tifrunner.gnm1.ann1.5Y9SE5 Arachis hypogaea HOM05D006376 ORTHO05D008046 4.2e-72 275.4 219 65.8
arahy.Tifrunner.gnm1.ann1.CZ5T9B Arachis hypogaea HOM05D006376 ORTHO05D008046 4.2e-72 275.4 213 67.6
BraA08t34989Z Brassica rapa HOM05D000280 ORTHO05D004091 5.5e-72 275.0 181 75.1
Haze_18787 Corylus avellana HOM05D006376 ORTHO05D008046 5.5e-72 275.0 176 75.0
FAN08G1323 Fragaria x ananassa HOM05D006376 ORTHO05D008046 5.5e-72 275.0 247 60.7
AUR62033755 Chenopodium quinoa HOM05D006376 ORTHO05D008046 7.2e-72 274.6 242 59.5
Phvul.002G327000 Phaseolus vulgaris HOM05D006376 ORTHO05D008046 7.2e-72 274.6 203 66.5
Cfa019704 Carpinus fangiana HOM05D006376 ORTHO05D008046 9.4e-72 274.2 179 73.7
CARHR018640 Cardamine hirsuta HOM05D006376 ORTHO05D008046 1.2e-71 273.9 194 69.6
FvH4_5g16950 Fragaria vesca HOM05D006376 ORTHO05D008046 1.2e-71 273.9 244 60.7
FAN18G1549 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.2e-71 273.9 244 60.7
Aqoxy3G03987 Aquilegia oxysepala HOM05D006376 ORTHO05D008046 1.6e-71 273.5 229 61.1
FAN13G1861 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.6e-71 273.5 247 61.1
Lalb_Chr09g0330601 Lupinus albus HOM05D006376 ORTHO05D008046 1.6e-71 273.5 196 68.9
Glyma.08G051100 Glycine max HOM05D006376 ORTHO05D008046 2.7e-71 272.7 203 67.5
AT1G18060 Arabidopsis thaliana HOM05D006376 ORTHO05D008046 3.6e-71 272.3 194 70.1
RcHm_v2.0_Chr7g0179071 Rosa chinensis HOM05D006376 ORTHO05D008046 3.6e-71 272.3 231 62.8
Eucgr.B00851 Eucalyptus grandis HOM05D006376 ORTHO05D008046 1.0e-70 270.8 200 66.5
FAN04G0856 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.0e-70 270.8 247 59.9
Lj4g0006852 Lotus japonicus HOM05D006376 ORTHO05D008046 1.2e-69 267.3 196 68.4
MBI16_g21168_MAGBIO Magnolia biondii HOM05D006376 ORTHO05D008046 4.9e-68 261.9 255 55.7
EL10Ac5g11519 Beta vulgaris HOM05D006376 ORTHO05D008046 1.1e-67 260.8 183 68.9
Duzib084G1315 Durio zibethinus HOM05D006376 ORTHO05D008046 2.4e-67 259.6 215 59.5
Os01g0120500 Oryza sativa ssp. japonica HOM05D006376 ORTHO05D008046 7.0e-67 258.1 176 70.5
Aa31LG6G2990 Aethionema arabicum HOM05D006376 ORTHO05D008046 4.5e-66 255.4 226 59.7
BcaC07g38909 Brassica carinata HOM05D006376 ORTHO05D008046 5.9e-66 255.0 160 74.4
CDE03G0312 Ceratophyllum demersum HOM05D006376 ORTHO05D008046 1.0e-65 254.2 207 62.3
Zm00001eb334810 Zea mays HOM05D006376 ORTHO05D008046 1.3e-65 253.8 176 69.3
HPP92_000150 Vanilla planifolia HOM05D006376 ORTHO05D008046 1.7e-65 253.4 175 69.7
Ca_17222_v3 Cicer arietinum L. HOM05D006376 ORTHO05D008046 2.9e-65 252.7 164 73.2
PSO675G4918 Papaver somniferum HOM05D006376 ORTHO05D008046 5.0e-65 251.9 179 68.7
ClCG06G014480 Citrullus lanatus HOM05D006376 ORTHO05D008046 6.6e-65 251.5 211 62.1
PSO717G0073 Papaver somniferum HOM05D006376 ORTHO05D008046 8.6e-65 251.1 179 68.2
ATR0691G291 Amborella trichopoda HOM05D006376 ORTHO05D008046 1.1e-64 250.8 179 69.3
Migut.D01443 Erythranthe guttata HOM05D006376 ORTHO05D008046 2.8e-63 246.1 177 70.6
Lj3g0018404 Lotus japonicus HOM05D006376 ORTHO05D008046 3.6e-63 245.7 178 69.1
Sp1g16080 Schrenkiella parvula HOM05D006376 ORTHO05D008046 6.8e-62 241.5 148 75.0
Gohir.A12G267700 Gossypium hirsutum HOM05D006376 ORTHO05D008046 1.1e-59 234.2 240 55.0
SEGI_27865 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 1.1e-56 224.2 256 46.5
Pp3c8_21790 Physcomitrium patens HOM05D006376 ORTHO05D008046 8.0e-55 218.0 185 57.8
AagrBONN_evm.TU.Sc2ySwM_340.32 Anthoceros agrestis HOM05D006376 ORTHO05D008046 3.7e-52 209.1 186 53.8
unitig_21.g20431 Utricularia gibba HOM05D006376 ORTHO05D008046 6.4e-52 208.4 167 64.1
SMO116G0316 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 3.6e-47 192.6 223 47.5
MD06G1223100 Malus domestica HOM05D006376 ORTHO05D008046 1.4e-46 190.7 122 71.3
SMO164G0083 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 5.2e-46 188.7 181 54.1
Mapoly0001s0324 Marchantia polymorpha HOM05D006376 ORTHO05D008046 2.2e-44 183.3 221 44.3
SEGI_30520 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 1.2e-31 141.0 95 64.2
Thecc.03G047400 Theobroma cacao HOM05D006376 ORTHO05D008046 8.9e-30 134.8 125 58.4
MD14G1232300 Malus domestica HOM05D006376 ORTHO05D008046 3.0e-25 119.8 127 53.5
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 1.9e-24 117.1 173 37.6
Rhsim07G0070600 Rhododendron simsii HOM05D006376 ORTHO05D008046 1.3e-23 114.4 135 51.1
Hma1.2p1_0660F.1_g197690 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 2.6e-21 106.7 125 51.2
Cre09.g401350 Chlamydomonas reinhardtii HOM05D006376 ORTHO05D008046 8.4e-20 101.7 176 34.1
SEGI_17791 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 9.0e-14 81.6 62 56.5
arahy.Tifrunner.gnm1.ann1.VLX8JM Arachis hypogaea HOM05D006376 ORTHO05D008046 9.9e-13 78.2 100 49.0
arahy.Tifrunner.gnm1.ann1.8TB400 Arachis hypogaea HOM05D006376 ORTHO05D008046 1.1e-11 74.7 93 50.5
arahy.Tifrunner.gnm1.ann1.FQ3MGU Arachis hypogaea HOM05D006376 ORTHO05D008046 1.4e-11 74.3 93 49.5
arahy.Tifrunner.gnm1.ann1.Y3IZ58 Arachis hypogaea HOM05D006376 ORTHO05D008046 2.4e-11 73.6 93 49.5
arahy.Tifrunner.gnm1.ann1.W819WZ Arachis hypogaea HOM05D006376 ORTHO05D008046 5.5e-11 72.4 60 65.0
SMO137G0132 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 1.9e-08 63.9 104 39.4
Dinv17636 Davidia involucrata HOM05D012663 ORTHO05D004533 3.3e-08 63.2 134 35.8
SMO170G0025 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 3.7e-07 59.7 61 52.5
arahy.Tifrunner.gnm1.ann1.XS5A0Y Arachis hypogaea HOM05D006376 ORTHO05D008046 6.2e-07 58.9 73 50.7


User provided reference genes

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