Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g068780.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 2.3e-34 148.3 71 100.0
Sopen06g026060 Solanum pennellii HOM05D005946 ORTHO05D007340 2.3e-34 148.3 71 100.0
PGSC0003DMG400025576 Solanum tuberosum HOM05D005946 ORTHO05D007340 2.3e-34 148.3 71 100.0
Nitab4.5_0001841g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 6.6e-34 146.7 70 100.0
Nitab4.5_0008858g0060 Nicotiana tabacum HOM05D005946 ORTHO05D007340 1.9e-33 145.2 70 98.6
CAN.G1089.18 Capsicum annuum HOM05D005946 ORTHO05D007340 2.5e-33 144.8 70 98.6
Cc00_g13530 Coffea canephora HOM05D005946 ORTHO05D007340 3.3e-33 144.4 71 97.2
Manes.12G013300 Manihot esculenta HOM05D005946 ORTHO05D007340 3.3e-33 144.4 71 95.8
Manes.13G017850 Manihot esculenta HOM05D005946 ORTHO05D007340 3.3e-33 144.4 71 95.8
PGR004G0564 Punica granatum HOM05D005946 ORTHO05D007340 3.3e-33 144.4 71 94.4
Solyc03g118140.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 4.3e-33 144.1 71 97.2
Sopen03g037060 Solanum pennellii HOM05D005946 ORTHO05D007340 4.3e-33 144.1 71 97.2
TWI36G1309 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 5.6e-33 143.7 71 94.4
EL10Ac6g13474 Beta vulgaris HOM05D005946 ORTHO05D007340 7.3e-33 143.3 71 94.4
CAN.G843.5 Capsicum annuum HOM05D005946 ORTHO05D007340 1.2e-32 142.5 70 97.1
Potri.008G176801 Populus trichocarpa HOM05D005946 ORTHO05D007340 1.2e-32 142.5 71 94.4
Potri.010G058300 Populus trichocarpa HOM05D005946 ORTHO05D007340 1.2e-32 142.5 71 94.4
TWI36G1530 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 1.2e-32 142.5 71 93.0
TWI14G1045 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 1.6e-32 142.1 71 93.0
CiPaw.06G100600 Carya illinoinensis HOM05D005946 ORTHO05D007340 2.1e-32 141.7 71 93.0
Duzib251G0400 Durio zibethinus HOM05D005946 ORTHO05D007340 2.1e-32 141.7 71 94.4
Gohir.A03G127300 Gossypium hirsutum HOM05D005946 ORTHO05D007340 2.1e-32 141.7 71 94.4
Gorai.005G169000 Gossypium raimondii HOM05D005946 ORTHO05D007340 2.1e-32 141.7 71 94.4
Thecc.02G276900 Theobroma cacao HOM05D005946 ORTHO05D007340 2.1e-32 141.7 71 94.4
Dinv14819 Davidia involucrata HOM05D005946 ORTHO05D007340 4.7e-32 140.6 71 94.4
Duzib248G1204 Durio zibethinus HOM05D005946 ORTHO05D007340 4.7e-32 140.6 71 93.0
Eucgr.B03471 Eucalyptus grandis HOM05D005946 ORTHO05D007340 4.7e-32 140.6 71 93.0
CiPaw.05G112200 Carya illinoinensis HOM05D005946 ORTHO05D007340 6.1e-32 140.2 71 93.0
Rhsim12G0028200 Rhododendron simsii HOM05D005946 ORTHO05D007340 1.4e-31 139.0 71 91.5
Sed0027475 Sechium edule HOM05D005946 ORTHO05D007340 1.4e-31 139.0 71 91.5
Gohir.D02G150700 Gossypium hirsutum HOM05D005946 ORTHO05D007340 1.8e-31 138.7 71 93.0
Ciclev10033263m.g Citrus clementina HOM05D005946 ORTHO05D007340 3.1e-31 137.9 71 90.1
Gorai.002G192200 Gossypium raimondii HOM05D005946 ORTHO05D007340 3.1e-31 137.9 71 91.5
Migut.B01726 Erythranthe guttata HOM05D005946 ORTHO05D007340 4.0e-31 137.5 71 91.5
Migut.N01429 Erythranthe guttata HOM05D005946 ORTHO05D007340 4.0e-31 137.5 71 93.0
Rhsim07G0080600 Rhododendron simsii HOM05D005946 ORTHO05D007340 8.9e-31 136.3 71 91.5
SalBow5G0243 Salvia bowleyana HOM05D005946 ORTHO05D007340 1.2e-30 136.0 71 91.5
SalBow5G1014 Salvia bowleyana HOM05D005946 ORTHO05D007340 1.2e-30 136.0 71 91.5
CSS0024427 Camellia sinensis var. sinensis HOM05D005946 ORTHO05D007340 1.5e-30 135.6 71 88.7
Lsat_1_v5_gn_6_8840 Lactuca sativa HOM05D005946 ORTHO05D007340 1.5e-30 135.6 71 90.1
TPR.G21803 Trifolium pratense HOM05D005946 ORTHO05D007340 2.0e-30 135.2 71 88.7
Aa31LG10G8610 Aethionema arabicum HOM05D005946 ORTHO05D007340 4.4e-30 134.0 71 88.7
CANSAT21G2474 Cannabis sativa HOM05D005946 ORTHO05D007340 4.4e-30 134.0 71 88.7
ECA246G0405 Erigeron canadensis HOM05D005946 ORTHO05D007340 4.4e-30 134.0 71 88.7
HanXRQChr17g0534681 Helianthus annuus HOM05D005946 ORTHO05D007340 4.4e-30 134.0 71 88.7
Lsat_1_v5_gn_3_12801 Lactuca sativa HOM05D005946 ORTHO05D007340 4.4e-30 134.0 71 88.7
Phvul.001G260400 Phaseolus vulgaris HOM05D005946 ORTHO05D007340 4.4e-30 134.0 71 87.3
CARHR192660 Cardamine hirsuta HOM05D005946 ORTHO05D007340 5.8e-30 133.7 71 88.7
Thhalv10015210m.g Eutrema salsugineum HOM05D005946 ORTHO05D007340 5.8e-30 133.7 71 88.7
HanXRQChr07g0190741 Helianthus annuus HOM05D005946 ORTHO05D007340 5.8e-30 133.7 71 88.7
Medtr3g085600 Medicago truncatula HOM05D005946 ORTHO05D007340 5.8e-30 133.7 71 87.3
PGR102G2803 Punica granatum HOM05D005946 ORTHO05D007340 5.8e-30 133.7 71 85.9
Sp6g24240 Schrenkiella parvula HOM05D005946 ORTHO05D007340 5.8e-30 133.7 71 88.7
THA.LOC109116592 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 5.8e-30 133.7 71 88.7
arahy.Tifrunner.gnm1.ann1.55451G Arachis hypogaea HOM05D005946 ORTHO05D007340 7.5e-30 133.3 70 88.6
SalBow3G2240 Salvia bowleyana HOM05D005946 ORTHO05D007340 7.5e-30 133.3 71 91.5
MSTRG.28215 Avicennia marina HOM05D005946 ORTHO05D007340 1.3e-29 132.5 71 88.7
A03p09890 Brassica napus HOM05D005946 ORTHO05D007340 1.3e-29 132.5 71 87.3
Glyma.11G249100 Glycine max HOM05D005946 ORTHO05D007340 1.3e-29 132.5 71 85.9
Nn3g18946 Nelumbo nucifera HOM05D005946 ORTHO05D007340 1.3e-29 132.5 69 89.9
vmacro01071 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 1.3e-29 132.5 71 87.3
AL6G31720 Arabidopsis lyrata HOM05D005946 ORTHO05D007340 1.7e-29 132.1 71 87.3
AT5G20165 Arabidopsis thaliana HOM05D005946 ORTHO05D007340 1.7e-29 132.1 71 87.3
Carub.0006s1856 Capsella rubella HOM05D005946 ORTHO05D007340 1.7e-29 132.1 71 87.3
unitig_747.g21988 Utricularia gibba HOM05D005946 ORTHO05D007340 1.7e-29 132.1 71 90.1
Actinidia27305 Actinidia chinensis HOM05D005946 ORTHO05D007340 2.9e-29 131.3 71 87.3
CDE10G0705 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 2.9e-29 131.3 71 85.9
MD14G1133000 Malus domestica HOM05D005946 ORTHO05D007340 2.9e-29 131.3 71 87.3
A10p19740 Brassica napus HOM05D005946 ORTHO05D007340 3.7e-29 131.0 70 87.1
C09p56030 Brassica napus HOM05D005946 ORTHO05D007340 3.7e-29 131.0 70 87.1
BolC3t13619H Brassica oleracea HOM05D005946 ORTHO05D007340 3.7e-29 131.0 70 87.1
BolC9t58470H Brassica oleracea HOM05D005946 ORTHO05D007340 3.7e-29 131.0 70 87.1
BraA03t10302Z Brassica rapa HOM05D005946 ORTHO05D007340 3.7e-29 131.0 70 87.1
BraA10t44050Z Brassica rapa HOM05D005946 ORTHO05D007340 3.7e-29 131.0 70 87.1
MBI07_g24770_MAGBIO Magnolia biondii HOM05D005946 ORTHO05D007340 4.9e-29 130.6 71 85.9
SEGI_28367 Sequoiadendron giganteum HOM05D005946 ORTHO05D007340 4.9e-29 130.6 71 85.9
PSO063G0123 Papaver somniferum HOM05D005946 ORTHO05D007340 8.3e-29 129.8 71 85.9
PSO170G6765 Papaver somniferum HOM05D005946 ORTHO05D007340 8.3e-29 129.8 71 85.9
Prupe.5G124600 Prunus persica HOM05D005946 ORTHO05D007340 8.3e-29 129.8 71 84.5
TAR374G1140 Trochodendron aralioides HOM05D005946 ORTHO05D007340 8.3e-29 129.8 71 85.9
Lj4g0023384 Lotus japonicus HOM05D005946 ORTHO05D007340 1.1e-28 129.4 71 84.5
FvH4_5g11580 Fragaria vesca HOM05D005946 ORTHO05D007340 1.9e-28 128.6 71 85.9
Os02g0299600 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 2.4e-28 128.3 71 81.7
MD06G1111800 Malus domestica HOM05D005946 ORTHO05D007340 4.1e-28 127.5 71 84.5
Zm00001eb237180 Zea mays HOM05D005946 ORTHO05D007340 5.4e-28 127.1 70 82.9
Lalb_Chr05g0223941 Lupinus albus HOM05D005946 ORTHO05D007340 1.6e-27 125.6 71 81.7
Os05g0251500 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 1.6e-27 125.6 71 81.7
Lalb_Chr09g0332191 Lupinus albus HOM05D005946 ORTHO05D007340 2.7e-27 124.8 71 83.1
Mapoly0008s0042 Marchantia polymorpha HOM05D005946 ORTHO05D007340 6.0e-27 123.6 71 81.7
Psat7g023880 Pisum sativum HOM05D005946 ORTHO05D007340 1.7e-26 122.1 71 80.3
THA.LOC104799646 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 1.7e-26 122.1 90 70.0
CDE10G0420 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 3.9e-26 120.9 63 87.3
unitig_0.g1509 Utricularia gibba HOM05D005946 ORTHO05D007340 1.9e-25 118.6 71 83.1
vmacro14062 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 2.5e-25 118.2 62 87.1
arahy.Tifrunner.gnm1.ann1.XCNA8V Arachis hypogaea HOM05D005946 ORTHO05D007340 3.3e-25 117.9 99 62.6
RcHm_v2.0_Chr4g0430651 Rosa chinensis HOM05D005946 ORTHO05D007340 2.8e-24 114.8 69 76.8
AagrBONN_evm.TU.Sc2ySwM_228.3656 Anthoceros agrestis HOM05D005946 ORTHO05D007340 3.6e-24 114.4 71 71.8
Pp3s128_20 Physcomitrium patens HOM05D005946 ORTHO05D007340 1.4e-23 112.5 71 73.2
FvH4_4g23990 Fragaria vesca HOM05D005946 ORTHO05D007340 1.8e-23 112.1 69 76.8
Sabra08G0134600 Salix brachista HOM05D005946 ORTHO05D007340 2.6e-22 108.2 145 46.9
Cre07.g325735 Chlamydomonas reinhardtii HOM05D005946 ORTHO05D007340 4.9e-21 104.0 71 66.2
Peaxi162Scf00314g00635 Petunia axillaris HOM05D005946 ORTHO05D007340 1.9e-20 102.1 50 96.0
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 9.2e-20 99.8 53 84.9
MELO3C030289.2 Cucumis melo HOM05D005946 ORTHO05D007340 4.6e-19 97.4 48 91.7
C03p11470 Brassica napus HOM05D005946 ORTHO05D007340 6.0e-19 97.1 56 80.4
Actinidia22739 Actinidia chinensis HOM05D005946 ORTHO05D007340 7.8e-19 96.7 63 76.2
Glyma.18G008200 Glycine max HOM05D005946 ORTHO05D007340 2.3e-18 95.1 62 74.2
SGA_v2.0_scaffold11G05656 Striga asiatica HOM05D000612 ORTHO05D000461 2.3e-18 95.1 49 91.8
Nn1g00299 Nelumbo nucifera HOM05D005946 ORTHO05D007340 2.1e-16 88.6 44 86.4
TPR.G37229 Trifolium pratense HOM05D005946 ORTHO05D007340 3.6e-16 87.8 51 78.4
MCO08G327 Micromonas commoda HOM05D005946 ORTHO05D007340 5.2e-15 84.0 62 66.1
RcHm_v2.0_Chr5g0020411 Rosa chinensis HOM05D005946 ORTHO05D007340 2.6e-14 81.6 69 55.1
ATR0955G005 Amborella trichopoda HOM05D005946 ORTHO05D007340 5.8e-14 80.5 47 78.7
Dinv16088 Davidia involucrata HOM05D005946 ORTHO05D007340 1.3e-13 79.3 48 77.1
PRCOL_00003875 Prasinoderma coloniale HOM05D005946 ORTHO05D007340 1.3e-13 79.3 71 53.5
FAN07G2898 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.7e-13 79.0 62 62.9
SHI17703 Sapria himalayana HOM05D005946 ORTHO05D007340 1.7e-13 79.0 38 94.7
HPP92_000512 Vanilla planifolia HOM05D005946 ORTHO05D007340 3.7e-13 77.8 38 86.8
Sed0005468 Sechium edule HOM05D005946 ORTHO05D007340 4.9e-13 77.4 69 59.4
FvH4_3g12470 Fragaria vesca HOM05D005946 ORTHO05D045642 1.1e-12 76.3 70 51.4
FAN17G0158 Fragaria x ananassa HOM05D005946 ORTHO05D007340 2.4e-12 75.1 53 67.9
Peaxi162Scf00207g00238 Petunia axillaris HOM05D005946 ORTHO05D007340 2.4e-12 75.1 37 94.6
ClCG08G010140 Citrullus lanatus HOM05D005946 ORTHO05D007340 3.2e-12 74.7 37 89.2
Sabra10G0047000 Salix brachista HOM05D005946 ORTHO05D007340 3.2e-12 74.7 43 81.4
Nitab4.5_0005774g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 5.4e-12 73.9 34 100.0
FAN12G4044 Fragaria x ananassa HOM05D005946 ORTHO05D007340 7.1e-12 73.6 48 72.9
Psat5g094720 Pisum sativum HOM05D005946 ORTHO05D007340 1.6e-11 72.4 47 72.3
arahy.Tifrunner.gnm1.ann1.K0QS2G Arachis hypogaea HOM05D005946 ORTHO05D007340 6.0e-11 70.5 43 76.7
RcHm_v2.0_Chr7g0186171 Rosa chinensis HOM05D005946 ORTHO05D007340 1.9e-09 65.5 37 83.8
FAN04G2943 Fragaria x ananassa HOM05D005946 ORTHO05D007340 5.6e-09 63.9 36 83.3
FAN08G3074 Fragaria x ananassa HOM05D005946 ORTHO05D007340 5.6e-09 63.9 36 83.3
FAN18G3129 Fragaria x ananassa HOM05D005946 ORTHO05D007340 5.6e-09 63.9 36 83.3
Nitab4.5_0000976g0200 Nicotiana tabacum HOM05D005946 ORTHO05D007340 2.6e-06 55.1 27 92.6


User provided reference genes

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