Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 1.1e-164 583.2 276 100.0
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 2.6e-163 578.6 276 98.9
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 1.0e-162 576.6 276 99.6
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 8.2e-157 557.0 276 94.9
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 2.1e-152 542.3 276 92.8
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 4.6e-152 541.2 276 92.4
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 1.4e-140 503.1 278 88.5
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 5.7e-134 481.1 256 86.3
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 7.5e-134 480.7 268 82.8
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 9.7e-134 480.3 268 82.8
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 9.7e-134 480.3 265 81.9
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 1.3e-133 479.9 270 82.2
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 1.3e-133 479.9 270 82.6
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 2.8e-133 478.8 270 83.0
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 1.1e-132 476.9 276 80.4
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 2.4e-132 475.7 276 81.5
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 1.6e-131 473.0 269 81.4
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 3.5e-131 471.9 267 80.9
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 3.8e-130 468.4 265 82.3
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 6.5e-130 467.6 260 82.3
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 7.2e-129 464.2 275 79.3
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 9.4e-129 463.8 269 81.0
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 1.2e-128 463.4 276 79.3
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.7e-128 462.2 263 81.4
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 4.7e-128 461.5 263 81.0
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 4.7e-128 461.5 260 81.5
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 8.0e-128 460.7 265 80.0
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 3.0e-127 458.8 271 79.7
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 5.2e-127 458.0 264 81.1
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 6.8e-127 457.6 271 79.7
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 2.0e-126 456.1 268 78.7
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 2.0e-126 456.1 277 78.3
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 4.4e-126 454.9 270 78.5
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 4.4e-126 454.9 259 82.2
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 9.8e-126 453.8 262 80.2
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 9.8e-126 453.8 270 78.5
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 1.7e-125 453.0 269 78.1
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.2e-125 452.6 260 81.5
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 2.2e-125 452.6 263 77.9
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 3.7e-125 451.8 263 78.7
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 3.7e-125 451.8 260 79.2
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 3.7e-125 451.8 263 81.0
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 4.8e-125 451.4 276 77.2
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 6.3e-125 451.1 266 77.1
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 1.1e-124 450.3 268 79.5
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 1.8e-124 449.5 269 77.0
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 1.8e-124 449.5 269 77.0
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 2.4e-124 449.1 277 76.9
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 3.1e-124 448.7 260 80.0
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 9.1e-124 447.2 254 79.9
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 2.0e-123 446.0 277 77.3
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 2.0e-123 446.0 277 76.9
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 3.5e-123 445.3 260 80.0
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 1.3e-122 443.4 277 76.5
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 1.3e-122 443.4 250 81.2
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 1.7e-122 443.0 260 79.6
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 2.3e-122 442.6 260 76.9
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.1e-121 440.3 255 79.2
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 1.6e-120 436.4 267 73.8
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 1.6e-120 436.4 293 72.0
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 2.1e-120 436.0 272 75.7
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 3.6e-120 435.3 272 75.7
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 3.6e-120 435.3 255 78.8
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 3.6e-120 435.3 276 73.6
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 4.7e-120 434.9 281 75.4
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 6.1e-120 434.5 267 73.4
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 6.1e-120 434.5 281 75.4
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 1.0e-119 433.7 272 75.4
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 1.0e-119 433.7 260 75.4
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.4e-119 433.3 281 74.7
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 2.3e-119 432.6 272 75.0
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 2.3e-119 432.6 254 77.6
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 3.0e-119 432.2 271 74.9
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 3.0e-119 432.2 258 78.7
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 3.0e-119 432.2 281 75.1
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.2e-118 430.3 278 74.1
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 2.0e-118 429.5 272 75.0
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 5.7e-118 427.9 256 75.4
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 1.3e-117 426.8 263 75.7
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 1.3e-117 426.8 250 79.2
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 1.7e-117 426.4 271 74.5
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 1.7e-117 426.4 272 73.9
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 1.7e-117 426.4 262 76.7
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 2.8e-117 425.6 276 73.2
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 3.7e-117 425.2 260 77.7
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 4.9e-117 424.9 271 74.2
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 8.3e-117 424.1 266 74.1
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 2.4e-116 422.5 277 72.9
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 3.1e-116 422.2 280 72.9
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 4.1e-116 421.8 241 81.3
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 7.0e-116 421.0 269 74.3
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 7.0e-116 421.0 271 73.8
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 5.9e-115 417.9 286 69.6
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 7.8e-115 417.5 276 71.7
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 7.8e-115 417.5 259 74.5
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 7.8e-115 417.5 267 73.0
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.7e-114 416.4 258 76.0
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.9e-114 415.6 284 70.1
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 8.6e-114 414.1 272 72.8
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 2.5e-113 412.5 255 74.9
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 3.3e-113 412.1 269 71.0
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.0e-111 407.1 269 72.5
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 2.6e-110 402.5 231 81.8
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 4.4e-110 401.7 301 65.8
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 5.8e-110 401.4 268 71.3
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 1.7e-109 399.8 210 85.2
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 6.4e-109 397.9 295 67.1
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.1e-108 397.1 247 74.9
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 1.0e-106 390.6 280 69.6
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 1.0e-106 390.6 232 73.7
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 6.8e-103 377.9 232 71.1
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 3.4e-102 375.6 224 75.9
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 3.7e-101 372.1 218 78.9
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 7.0e-100 367.9 222 77.5
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 1.0e-98 364.0 228 69.3
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 3.3e-97 359.0 239 68.2
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 2.8e-96 355.9 223 68.2
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 4.0e-95 352.1 221 69.2
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 8.9e-95 350.9 223 68.6
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 4.9e-93 345.1 264 65.2
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.9e-92 343.2 287 60.3
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 9.2e-92 340.9 193 79.8
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.8e-88 329.3 333 53.2
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 4.4e-86 322.0 280 60.7
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 9.9e-86 320.9 180 81.7
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 6.4e-85 318.2 233 65.7
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 1.4e-84 317.0 165 85.5
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 4.7e-80 302.0 224 59.4
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 1.5e-78 297.0 199 65.8
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 5.1e-74 282.0 163 80.4
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 4.9e-69 265.4 163 75.5
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 7.1e-68 261.5 156 76.3
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 3.7e-64 249.2 139 80.6
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 2.9e-61 239.6 213 59.2
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 1.4e-60 237.3 224 57.6
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 2.3e-50 203.4 126 76.2
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 5.1e-50 202.2 121 76.9
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 3.9e-34 149.4 105 70.5
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 4.8e-32 142.5 86 80.2
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 1.5e-25 120.9 72 77.8
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 2.6e-25 120.2 80 68.8
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 3.7e-24 116.3 69 71.0
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 1.6e-22 110.9 64 78.1
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.6e-22 110.9 65 69.2
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 1.3e-21 107.8 53 86.8
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 1.4e-18 97.8 89 55.1
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 6.7e-18 95.5 61 73.8
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 2.7e-14 83.6 89 51.7
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 8.5e-13 78.6 58 62.1
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 2.5e-12 77.0 52 67.3
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 4.2e-12 76.3 52 71.2
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 1.2e-11 74.7 44 75.0
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 4.7e-11 72.8 54 66.7
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 1.0e-10 71.6 66 57.6
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 3.0e-10 70.1 54 61.1


User provided reference genes

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