Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 5.3e-173 610.9 306 100.0
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.2e-169 599.7 306 98.4
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 5.9e-164 580.9 306 94.8
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 5.2e-128 461.5 314 76.4
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 1.5e-106 390.2 246 77.6
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.9e-106 389.8 299 67.9
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 3.2e-101 372.5 299 65.9
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 4.1e-101 372.1 292 65.4
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 7.8e-100 367.9 313 64.2
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 1.9e-98 363.2 315 63.2
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 4.3e-98 362.1 303 64.4
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 1.2e-97 360.5 307 63.2
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 4.0e-96 355.5 242 69.8
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 2.6e-95 352.8 227 74.9
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 3.4e-95 352.4 236 71.2
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 7.6e-95 351.3 274 64.6
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.7e-94 350.1 221 76.0
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.7e-94 350.1 221 76.0
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 2.4e-93 346.3 243 70.8
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 7.1e-93 344.7 218 75.7
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 7.1e-93 344.7 224 74.6
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 1.2e-92 344.0 235 72.3
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 7.8e-92 341.3 292 60.3
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 3.0e-91 339.3 226 75.2
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 5.1e-91 338.6 222 75.2
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 8.7e-91 337.8 247 70.0
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 1.5e-90 337.0 232 71.6
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 1.9e-90 336.7 213 76.1
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.5e-90 336.3 226 74.8
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 2.5e-90 336.3 220 74.1
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 2.5e-90 336.3 279 63.4
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 3.3e-90 335.9 230 70.4
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 4.3e-90 335.5 212 77.4
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 7.3e-90 334.7 246 69.9
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 7.3e-90 334.7 225 73.8
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 7.3e-90 334.7 250 66.8
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 9.6e-90 334.3 225 72.4
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 9.6e-90 334.3 226 74.3
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 9.6e-90 334.3 226 74.3
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 9.6e-90 334.3 232 69.8
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 1.2e-89 334.0 216 75.0
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 1.2e-89 334.0 216 75.0
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 1.6e-89 333.6 216 75.5
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 1.6e-89 333.6 221 70.6
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 2.8e-89 332.8 272 63.2
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 3.6e-89 332.4 216 72.7
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 3.6e-89 332.4 211 76.3
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 3.6e-89 332.4 232 72.4
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 8.1e-89 331.3 215 74.9
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 8.1e-89 331.3 276 62.3
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 1.1e-88 330.9 247 67.2
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 1.1e-88 330.9 215 74.9
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 1.1e-88 330.9 262 64.9
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 1.4e-88 330.5 215 74.9
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.4e-88 330.5 247 66.8
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 1.4e-88 330.5 219 75.3
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 1.8e-88 330.1 211 75.4
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 3.1e-88 329.3 270 62.2
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 3.1e-88 329.3 224 71.9
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 4.0e-88 328.9 277 62.5
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 4.0e-88 328.9 211 77.3
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 5.3e-88 328.6 235 68.9
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 5.3e-88 328.6 216 74.1
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 6.9e-88 328.2 230 70.9
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 9.0e-88 327.8 230 69.6
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 2.0e-87 326.6 254 65.0
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 2.6e-87 326.2 238 68.5
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 5.8e-87 325.1 212 73.1
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 7.6e-87 324.7 214 72.9
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 9.9e-87 324.3 223 71.3
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 9.9e-87 324.3 235 68.5
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 2.9e-86 322.8 235 69.8
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.9e-86 322.8 250 67.6
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 3.8e-86 322.4 247 66.8
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 3.8e-86 322.4 224 70.5
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 4.9e-86 322.0 235 68.1
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 6.4e-86 321.6 216 73.1
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 6.4e-86 321.6 219 70.3
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 1.1e-85 320.9 274 63.1
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 1.1e-85 320.9 274 63.1
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 1.1e-85 320.9 255 63.1
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 1.4e-85 320.5 235 69.4
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 1.4e-85 320.5 219 72.1
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 1.4e-85 320.5 219 72.1
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 1.4e-85 320.5 219 72.1
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 2.4e-85 319.7 216 72.7
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 2.4e-85 319.7 216 72.7
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 2.4e-85 319.7 227 69.6
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 3.2e-85 319.3 218 70.2
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 3.2e-85 319.3 243 64.2
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 3.2e-85 319.3 227 69.2
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 4.2e-85 318.9 220 72.3
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 5.4e-85 318.5 274 62.8
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 5.4e-85 318.5 229 68.1
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 7.1e-85 318.2 273 62.6
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 7.1e-85 318.2 249 67.5
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 1.2e-84 317.4 223 68.6
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 2.1e-84 316.6 274 60.9
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 3.5e-84 315.8 241 64.7
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 4.6e-84 315.5 220 70.0
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 4.6e-84 315.5 212 72.2
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 7.8e-84 314.7 215 71.6
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 1.0e-83 314.3 216 70.8
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 1.3e-83 313.9 213 72.3
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 1.7e-83 313.5 272 60.7
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 1.7e-83 313.5 241 63.1
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 6.6e-83 311.6 213 71.4
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 6.6e-83 311.6 216 70.4
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 8.7e-83 311.2 222 68.9
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.1e-82 310.8 245 64.5
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.5e-82 310.5 245 64.9
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 7.3e-82 308.1 273 57.5
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 3.6e-81 305.8 248 65.7
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 3.6e-81 305.8 213 69.5
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 4.8e-81 305.4 229 68.1
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 4.8e-81 305.4 229 68.1
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 8.1e-81 304.7 274 61.3
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 6.9e-80 301.6 207 72.5
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 9.0e-80 301.2 203 71.9
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 1.2e-79 300.8 207 71.0
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 2.0e-79 300.1 229 67.7
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 2.6e-79 299.7 207 71.0
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 5.8e-79 298.5 210 69.0
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 7.6e-79 298.1 229 67.2
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 2.2e-78 296.6 207 70.5
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 3.8e-78 295.8 210 68.6
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 4.9e-78 295.4 233 65.2
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 3.2e-77 292.7 217 65.4
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 4.2e-77 292.4 243 62.1
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 1.2e-76 290.8 180 77.8
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 3.5e-76 289.3 242 60.7
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 1.3e-75 287.3 212 67.0
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 3.0e-75 286.2 175 76.6
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 3.3e-74 282.7 224 62.1
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 3.3e-74 282.7 224 61.6
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 3.3e-74 282.7 224 61.6
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 1.3e-73 280.8 224 61.2
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 1.3e-73 280.8 224 61.2
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 1.3e-73 280.8 224 61.2
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 1.3e-70 270.8 242 56.6
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 6.0e-68 261.9 174 72.4
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 2.5e-66 256.5 221 60.2
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 5.7e-66 255.4 202 61.9
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 1.5e-63 247.3 219 59.8
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 5.5e-61 238.8 221 54.3
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 3.0e-59 233.0 235 55.7
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 4.8e-57 225.7 282 50.4
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 1.4e-56 224.2 224 53.1
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 1.8e-56 223.8 143 76.9
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 5.3e-56 222.2 143 76.2
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 7.7e-55 218.4 133 78.9
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 7.7e-55 218.4 242 47.9
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 7.9e-52 208.4 228 49.1
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 3.7e-49 199.5 221 47.1
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.2e-44 184.5 107 82.2
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 2.3e-43 180.3 202 51.5
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 7.0e-40 168.7 160 48.8
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 1.7e-38 164.1 143 55.2
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.7e-25 120.9 78 71.8
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 5.5e-21 105.9 79 64.6
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 1.7e-14 84.3 89 48.3
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 2.9e-14 83.6 75 57.3
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 1.5e-13 81.3 65 60.0
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 8.0e-12 75.5 71 47.9
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 5.7e-10 69.3 45 75.6
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 7.0e-08 62.4 81 46.9
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 1.7e-06 57.8 40 65.0


User provided reference genes

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