Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g024990 Solanum pennellii HOM05D007609 ORTHO05D009539 3.7e-44 181.0 83 100.0
Solyc06g066700.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 2.6e-42 174.9 83 96.4
PGSC0003DMG400016536 Solanum tuberosum HOM05D007609 ORTHO05D009539 1.4e-32 142.5 83 83.1
Nitab4.5_0000351g0200 Nicotiana tabacum HOM05D007609 ORTHO05D009539 6.3e-20 100.5 72 70.8
Peaxi162Scf00207g00095 Petunia axillaris HOM05D007609 ORTHO05D009539 1.0e-17 93.2 95 53.7
Nitab4.5_0003351g0110 Nicotiana tabacum HOM05D007609 ORTHO05D009539 1.8e-14 82.4 84 56.0
PGSC0003DMG400005604 Solanum tuberosum HOM05D007609 ORTHO05D009539 7.5e-13 77.0 56 58.9
Peaxi162Scf00015g00416 Petunia axillaris HOM05D007609 ORTHO05D009539 1.3e-12 76.3 81 50.6
Sopen03g039040 Solanum pennellii HOM05D007609 ORTHO05D009539 5.4e-11 70.9 58 55.2
Nitab4.5_0005851g0050 Nicotiana tabacum HOM05D007609 ORTHO05D009539 3.5e-10 68.2 68 54.4
Solyc03g120160.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 7.7e-10 67.0 59 54.2
Ciclev10010038m.g Citrus clementina HOM05D007609 ORTHO05D009539 1.3e-09 66.2 53 52.8
Rhsim08G0221700 Rhododendron simsii HOM05D007609 ORTHO05D009539 3.8e-09 64.7 73 43.8
Hma1.2p1_0018F.1_g013450 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 6.5e-09 63.9 51 56.9
Lj4g0003308 Lotus japonicus HOM05D007609 ORTHO05D009539 6.5e-09 63.9 43 62.8
Potri.018G078900 Populus trichocarpa HOM05D007609 ORTHO05D009539 6.5e-09 63.9 79 43.0
AUR62016446 Chenopodium quinoa HOM05D007609 ORTHO05D009539 1.5e-08 62.8 61 54.1
Dinv38045 Davidia involucrata HOM05D007609 ORTHO05D009539 1.5e-08 62.8 86 41.9
Manes.03G019500 Manihot esculenta HOM05D007609 ORTHO05D009539 1.5e-08 62.8 40 65.0
Solyc03g120155.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 1.9e-08 62.4 43 67.4
Gohir.A06G061700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 2.5e-08 62.0 45 60.0
Gohir.D07G005100 Gossypium hirsutum HOM05D007609 ORTHO05D009539 4.2e-08 61.2 37 62.2
Sopen03g039030 Solanum pennellii HOM05D007609 ORTHO05D009539 4.2e-08 61.2 75 46.7
PGSC0003DMG400005605 Solanum tuberosum HOM05D007609 ORTHO05D009539 5.5e-08 60.8 49 57.1
Gohir.A07G006801 Gossypium hirsutum HOM05D007609 ORTHO05D009539 7.2e-08 60.5 31 71.0
Gorai.001G004700 Gossypium raimondii HOM05D007609 ORTHO05D009539 7.2e-08 60.5 31 71.0
Sc18g0001160 Simmondsia chinensis HOM05D007609 ORTHO05D009539 7.2e-08 60.5 41 58.5
TPR.G35275 Trifolium pratense HOM05D007609 ORTHO05D009539 7.2e-08 60.5 44 56.8
TAR383G0714 Trochodendron aralioides HOM05D007609 ORTHO05D009539 7.2e-08 60.5 45 57.8
Lj2g0010717 Lotus japonicus HOM05D007609 ORTHO05D009539 9.4e-08 60.1 52 51.9
Sabra18G0066900 Salix brachista HOM05D007609 ORTHO05D009539 9.4e-08 60.1 52 50.0
unitig_899.g14776 Utricularia gibba HOM05D007609 ORTHO05D009539 9.4e-08 60.1 72 40.3
vmacro18908 Vaccinium macrocarpon HOM05D007609 ORTHO05D009539 9.4e-08 60.1 80 41.2
Gohir.D06G060000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 1.6e-07 59.3 45 57.8
Gorai.010G069800 Gossypium raimondii HOM05D007609 ORTHO05D009539 1.6e-07 59.3 45 57.8
Thecc.09G111700 Theobroma cacao HOM05D007609 ORTHO05D009539 1.6e-07 59.3 46 58.7
Cpa.g.sc451.1 Carica papaya HOM05D007609 ORTHO05D009539 2.1e-07 58.9 82 39.0
Glyma.09G189800 Glycine max HOM05D007609 ORTHO05D009539 2.1e-07 58.9 51 51.0
CSS0012617 Camellia sinensis var. sinensis HOM05D007609 ORTHO05D009539 2.7e-07 58.5 57 49.1
Migut.D01028 Erythranthe guttata HOM05D007609 ORTHO05D009539 2.7e-07 58.5 33 66.7
Glyma.07G087100 Glycine max HOM05D007609 ORTHO05D009539 2.7e-07 58.5 45 53.3
Gohir.A08G241000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 3.6e-07 58.2 30 70.0
Gohir.D08G261700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 3.6e-07 58.2 30 70.0
Gorai.004G279800 Gossypium raimondii HOM05D007609 ORTHO05D009539 3.6e-07 58.2 30 70.0
Medtr8g083460 Medicago truncatula HOM05D007609 ORTHO05D009539 3.6e-07 58.2 46 52.2
Potri.006G159300 Populus trichocarpa HOM05D007609 ORTHO05D009539 4.7e-07 57.8 52 48.1
Phvul.004G162600 Phaseolus vulgaris HOM05D007609 ORTHO05D009539 6.1e-07 57.4 38 57.9
Sed0020512 Sechium edule HOM05D007609 ORTHO05D009539 6.1e-07 57.4 81 35.8
Hma1.2p1_0092F.1_g046650 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 8.0e-07 57.0 33 60.6
Sp1g38930 Schrenkiella parvula HOM05D010933 ORTHO05D013136 8.0e-07 57.0 70 35.7
CsaV3_7G033200 Cucumis sativus L. HOM05D010933 ORTHO05D013136 1.0e-06 56.6 81 38.3
Manes.16G116800 Manihot esculenta HOM05D007609 ORTHO05D009539 1.0e-06 56.6 31 67.7
BcaB04g17155 Brassica carinata HOM05D010933 ORTHO05D013136 1.4e-06 56.2 78 34.6
COL.COLO4_34908 Corchorus olitorius HOM05D007609 ORTHO05D009539 1.8e-06 55.8 29 69.0
VMungo0464G1934 Vigna mungo HOM05D007609 ORTHO05D009539 1.8e-06 55.8 46 47.8
Haze_25706 Corylus avellana HOM05D007609 ORTHO05D009539 2.3e-06 55.5 84 41.7
DCAR_023052 Daucus carota HOM05D007609 ORTHO05D009539 2.3e-06 55.5 73 38.4
Atru.chr7.1339 Acer truncatum HOM05D007609 ORTHO05D009539 3.0e-06 55.1 33 66.7
Ca_25525_v3 Cicer arietinum L. HOM05D007609 ORTHO05D009539 3.0e-06 55.1 85 36.5
Lsat_1_v5_gn_4_103641 Lactuca sativa HOM05D007609 ORTHO05D009539 3.0e-06 55.1 70 38.6
C03p90620 Brassica napus HOM05D010933 ORTHO05D013136 5.2e-06 54.3 78 35.9
ECA232G3029 Erigeron canadensis HOM05D007609 ORTHO05D009539 5.2e-06 54.3 29 65.5
HanXRQChr10g0317871 Helianthus annuus HOM05D007609 ORTHO05D009539 5.2e-06 54.3 48 45.8
AUR62011005 Chenopodium quinoa HOM05D007609 ORTHO05D009539 6.8e-06 53.9 29 65.5
DCAR_028717 Daucus carota HOM05D007609 ORTHO05D009539 6.8e-06 53.9 29 62.1
AUR62021516 Chenopodium quinoa HOM05D007609 ORTHO05D009539 8.8e-06 53.5 29 65.5
QL05p023464 Quercus lobata HOM05D007609 ORTHO05D009539 8.8e-06 53.5 86 37.2
SGA_v2.0_scaffold5G02584 Striga asiatica HOM05D007609 ORTHO05D009539 8.8e-06 53.5 59 39.0


User provided reference genes

Program Settings