Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g024910 Solanum pennellii HOM05D003870 ORTHO05D004567 2.7e-74 282.0 146 100.0
Solyc06g066640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 2.3e-73 278.9 146 98.6
PGSC0003DMG400016504 Solanum tuberosum HOM05D003870 ORTHO05D004567 6.6e-73 277.3 146 97.9
CAN.G1152.5 Capsicum annuum HOM05D003870 ORTHO05D004567 3.6e-71 271.6 146 95.9
Nitab4.5_0000351g0060 Nicotiana tabacum HOM05D003870 ORTHO05D004567 8.1e-71 270.4 146 94.5
Nitab4.5_0018837g0020 Nicotiana tabacum HOM05D003870 ORTHO05D004567 2.4e-70 268.9 146 93.8
Nitab4.5_0002859g0140 Nicotiana tabacum HOM05D003870 ORTHO05D004567 3.8e-68 261.5 146 91.1
PGSC0003DMG400002626 Solanum tuberosum HOM05D003870 ORTHO05D004567 6.4e-68 260.8 146 89.7
Nitab4.5_0003418g0030 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.4e-67 259.6 146 90.4
Nitab4.5_0001315g0130 Nicotiana tabacum HOM05D003870 ORTHO05D004567 2.4e-67 258.8 146 89.7
CAN.G438.27 Capsicum annuum HOM05D003870 ORTHO05D004567 4.2e-67 258.1 146 90.4
Peaxi162Scf00015g00032 Petunia axillaris HOM05D003870 ORTHO05D004567 5.4e-67 257.7 146 89.7
Solyc03g120640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 3.5e-66 255.0 146 88.4
Solyc12g044280.2 Solanum lycopersicum HOM05D003870 ORTHO05D004567 3.5e-66 255.0 146 90.4
Sopen12g022520 Solanum pennellii HOM05D003870 ORTHO05D004567 3.5e-66 255.0 146 90.4
PGSC0003DMG400007571 Solanum tuberosum HOM05D003870 ORTHO05D004567 3.5e-66 255.0 147 91.8
PGR102G1204 Punica granatum HOM05D003870 ORTHO05D004567 4.8e-63 244.6 146 86.3
Hma1.2p1_1195F.1_g265780 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 6.2e-63 244.2 147 86.4
Hma1.2p1_3147F.1_g333153 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 6.2e-63 244.2 147 86.4
Ciclev10026722m.g Citrus clementina HOM05D003870 ORTHO05D004567 8.1e-63 243.8 146 84.9
Peaxi162Scf00034g00513 Petunia axillaris HOM05D003870 ORTHO05D004567 1.1e-62 243.4 143 86.7
Sabra03G0026800 Salix brachista HOM05D003870 ORTHO05D004567 4.0e-62 241.5 146 84.2
arahy.Tifrunner.gnm1.ann1.71HCYD Arachis hypogaea HOM05D003870 ORTHO05D004567 6.9e-62 240.7 146 84.9
arahy.Tifrunner.gnm1.ann1.YBSA05 Arachis hypogaea HOM05D003870 ORTHO05D004567 6.9e-62 240.7 146 84.9
Phvul.010G148800 Phaseolus vulgaris HOM05D003870 ORTHO05D004567 6.9e-62 240.7 146 84.2
Dinv38024 Davidia involucrata HOM05D003870 ORTHO05D004567 9.0e-62 240.4 146 84.9
PSO782G2129 Papaver somniferum HOM05D003870 ORTHO05D004567 1.5e-61 239.6 147 85.0
PSO832G3918 Papaver somniferum HOM05D003870 ORTHO05D004567 1.5e-61 239.6 147 85.0
Cfa002093 Carpinus fangiana HOM05D003870 ORTHO05D004567 2.0e-61 239.2 146 84.2
Haze_16364 Corylus avellana HOM05D003870 ORTHO05D004567 2.0e-61 239.2 146 84.2
Glyma.07G019700 Glycine max HOM05D003870 ORTHO05D004567 2.0e-61 239.2 146 83.6
Manes.04G129900 Manihot esculenta HOM05D003870 ORTHO05D004567 2.6e-61 238.8 146 83.6
Potri.003G052500 Populus trichocarpa HOM05D003870 ORTHO05D004567 2.6e-61 238.8 146 82.9
Glyma.08G204800 Glycine max HOM05D003870 ORTHO05D004567 4.5e-61 238.0 146 83.6
VMungo0331G0764 Vigna mungo HOM05D003870 ORTHO05D004567 7.6e-61 237.3 146 82.9
Manes.11G038100 Manihot esculenta HOM05D003870 ORTHO05D004567 9.9e-61 236.9 146 82.9
TAR383G0495 Trochodendron aralioides HOM05D003870 ORTHO05D004567 9.9e-61 236.9 146 84.2
Cc04_g03050 Coffea canephora HOM05D003870 ORTHO05D004567 1.3e-60 236.5 146 84.9
TAR636G2531 Trochodendron aralioides HOM05D003870 ORTHO05D004567 1.3e-60 236.5 146 83.6
SGA_v2.0_scaffold5G02558 Striga asiatica HOM05D003870 ORTHO05D004567 1.7e-60 236.1 146 82.9
Nn2g11696 Nelumbo nucifera HOM05D003870 ORTHO05D004567 2.2e-60 235.7 146 83.6
Nn3g18073 Nelumbo nucifera HOM05D003870 ORTHO05D004567 2.2e-60 235.7 147 84.4
Sed0024359 Sechium edule HOM05D003870 ORTHO05D004567 2.9e-60 235.3 146 80.8
Lsat_1_v5_gn_5_130901 Lactuca sativa HOM05D003870 ORTHO05D004567 3.8e-60 235.0 143 83.2
MBI01_g07179_MAGBIO Magnolia biondii HOM05D003870 ORTHO05D004567 4.9e-60 234.6 146 82.9
Lj3g0012525 Lotus japonicus HOM05D003870 ORTHO05D004567 6.4e-60 234.2 150 81.3
TAR626G1423 Trochodendron aralioides HOM05D003870 ORTHO05D004567 8.4e-60 233.8 146 82.9
Aqoxy7G01609 Aquilegia oxysepala HOM05D003870 ORTHO05D004567 1.4e-59 233.0 146 80.8
CSS0035581 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 1.4e-59 233.0 146 82.2
Nitab4.5_0001968g0090 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.9e-59 232.6 146 84.2
Migut.D01017 Erythranthe guttata HOM05D003870 ORTHO05D004567 3.2e-59 231.9 146 80.8
Sp3g14500 Schrenkiella parvula HOM05D003870 ORTHO05D004567 3.2e-59 231.9 146 78.8
CSS0004601 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 4.2e-59 231.5 146 80.1
CSS0022866 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 4.2e-59 231.5 146 80.1
CiPaw.01G235900 Carya illinoinensis HOM05D003870 ORTHO05D004567 4.2e-59 231.5 146 81.5
Medtr2g101820 Medicago truncatula HOM05D003870 ORTHO05D004567 4.2e-59 231.5 148 82.4
CANSAT56G1465 Cannabis sativa HOM05D003870 ORTHO05D004567 5.4e-59 231.1 146 80.8
HanXRQChr12g0360771 Helianthus annuus HOM05D003870 ORTHO05D004567 5.4e-59 231.1 146 80.8
Lalb_Chr14g0373231 Lupinus albus HOM05D003870 ORTHO05D004567 5.4e-59 231.1 146 81.5
BcaB04g18888 Brassica carinata HOM05D003870 ORTHO05D004567 7.1e-59 230.7 146 78.1
Sed0005638 Sechium edule HOM05D003870 ORTHO05D004567 7.1e-59 230.7 146 80.1
CsaV3_3G025000 Cucumis sativus L. HOM05D003870 ORTHO05D004567 9.3e-59 230.3 146 80.1
Oeu029644.1 Olea europaea HOM05D003870 ORTHO05D004567 9.3e-59 230.3 146 82.9
MELO3C012971.2 Cucumis melo HOM05D003870 ORTHO05D004567 1.2e-58 229.9 146 79.5
Eucgr.F03038 Eucalyptus grandis HOM05D003870 ORTHO05D004567 1.2e-58 229.9 145 80.7
AT3G16140 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 1.6e-58 229.6 146 76.7
Psat5g298080 Pisum sativum HOM05D003870 ORTHO05D004567 1.6e-58 229.6 147 79.6
QL05p021780 Quercus lobata HOM05D003870 ORTHO05D004567 1.6e-58 229.6 145 80.0
GSVIVG01017071001 Vitis vinifera HOM05D003870 ORTHO05D004567 1.6e-58 229.6 146 80.8
Actinidia21679 Actinidia chinensis HOM05D003870 ORTHO05D004567 2.1e-58 229.2 146 79.5
Migut.I00942 Erythranthe guttata HOM05D003870 ORTHO05D004567 2.1e-58 229.2 146 79.5
AT1G52230 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 2.7e-58 228.8 146 77.4
CARHR091300 Cardamine hirsuta HOM05D003870 ORTHO05D004567 2.7e-58 228.8 146 76.0
Prupe.3G067400 Prunus persica HOM05D003870 ORTHO05D004567 2.7e-58 228.8 146 80.1
Sp1g38770 Schrenkiella parvula HOM05D003870 ORTHO05D004567 2.7e-58 228.8 146 77.4
AL3G28820 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 3.5e-58 228.4 146 76.7
Thhalv10021715m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 3.5e-58 228.4 146 78.1
ClCG07G013150 Citrullus lanatus HOM05D003870 ORTHO05D004567 4.6e-58 228.0 146 79.5
BraA08t32272Z Brassica rapa HOM05D003870 ORTHO05D004567 6.0e-58 227.6 146 76.7
BcaC05g28907 Brassica carinata HOM05D003870 ORTHO05D004567 7.9e-58 227.3 146 77.4
A05p33360 Brassica napus HOM05D003870 ORTHO05D004567 7.9e-58 227.3 146 77.4
C05p50360 Brassica napus HOM05D003870 ORTHO05D004567 7.9e-58 227.3 146 77.4
C06p07460 Brassica napus HOM05D003870 ORTHO05D004567 7.9e-58 227.3 146 77.4
BolC5t33784H Brassica oleracea HOM05D003870 ORTHO05D004567 7.9e-58 227.3 146 77.4
BolC6t35835H Brassica oleracea HOM05D003870 ORTHO05D004567 7.9e-58 227.3 146 77.4
BraA05t22161Z Brassica rapa HOM05D003870 ORTHO05D004567 7.9e-58 227.3 146 77.4
Ah.01g021620 Amaranthus hybridus HOM05D003870 ORTHO05D004567 1.0e-57 226.9 146 76.7
A08p02270 Brassica napus HOM05D003870 ORTHO05D004567 1.0e-57 226.9 146 76.7
Carub.0001s4120 Capsella rubella HOM05D003870 ORTHO05D004567 1.0e-57 226.9 146 77.4
ECA234G4669 Erigeron canadensis HOM05D003870 ORTHO05D004567 1.0e-57 226.9 146 80.1
Thhalv10011814m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 1.3e-57 226.5 146 76.7
Glyma.15G016300 Glycine max HOM05D003870 ORTHO05D004567 1.8e-57 226.1 146 81.5
A06p01960 Brassica napus HOM05D003870 ORTHO05D004567 2.3e-57 225.7 146 77.4
BraA01t03856Z Brassica rapa HOM05D003870 ORTHO05D004567 2.3e-57 225.7 146 76.7
BraA06t23412Z Brassica rapa HOM05D003870 ORTHO05D004567 2.3e-57 225.7 146 77.4
Carub.0003s1588 Capsella rubella HOM05D003870 ORTHO05D004567 2.3e-57 225.7 146 77.4
COL.COLO4_30434 Corchorus olitorius HOM05D003870 ORTHO05D004567 2.3e-57 225.7 146 80.1
DCAR_023061 Daucus carota HOM05D003870 ORTHO05D004567 2.3e-57 225.7 146 78.8
Thecc.06G092200 Theobroma cacao HOM05D003870 ORTHO05D004567 2.3e-57 225.7 146 80.1
BcaB06g25707 Brassica carinata HOM05D003870 ORTHO05D004567 3.0e-57 225.3 146 76.7
BcaC01g01311 Brassica carinata HOM05D003870 ORTHO05D004567 3.0e-57 225.3 146 76.0
BcaC01g01313 Brassica carinata HOM05D003870 ORTHO05D004567 3.0e-57 225.3 146 76.0
C03p90500 Brassica napus HOM05D003870 ORTHO05D004567 3.0e-57 225.3 146 76.7
BolC3t21374H Brassica oleracea HOM05D003870 ORTHO05D004567 3.0e-57 225.3 146 76.7
Eucgr.J02958 Eucalyptus grandis HOM05D003870 ORTHO05D004567 3.0e-57 225.3 147 79.6
Lsat_1_v5_gn_1_35241 Lactuca sativa HOM05D003870 ORTHO05D004567 3.0e-57 225.3 144 79.9
CARHR042360 Cardamine hirsuta HOM05D003870 ORTHO05D004567 3.9e-57 224.9 146 76.0
Gohir.A05G131700 Gossypium hirsutum HOM05D003870 ORTHO05D004567 3.9e-57 224.9 146 79.5
Lalb_Chr25g0279971 Lupinus albus HOM05D003870 ORTHO05D004567 3.9e-57 224.9 147 78.9
MD09G1209500 Malus domestica HOM05D003870 ORTHO05D004567 3.9e-57 224.9 146 78.1
RcHm_v2.0_Chr2g0138931 Rosa chinensis HOM05D003870 ORTHO05D004567 3.9e-57 224.9 146 78.1
VMungo1080G1700 Vigna mungo HOM05D003870 ORTHO05D004567 5.1e-57 224.6 139 82.7
FAN05G2130 Fragaria x ananassa HOM05D003870 ORTHO05D004567 8.7e-57 223.8 146 77.4
CiPaw.02G148900 Carya illinoinensis HOM05D003870 ORTHO05D004567 1.1e-56 223.4 146 78.8
Duzib235G0817 Durio zibethinus HOM05D003870 ORTHO05D004567 1.1e-56 223.4 146 78.8
FAN14G2389 Fragaria x ananassa HOM05D003870 ORTHO05D004567 1.1e-56 223.4 146 77.4
Gohir.D05G131200 Gossypium hirsutum HOM05D003870 ORTHO05D004567 1.1e-56 223.4 146 78.8
Gorai.009G134900 Gossypium raimondii HOM05D003870 ORTHO05D004567 1.1e-56 223.4 146 78.8
A01p37960 Brassica napus HOM05D003870 ORTHO05D004567 1.5e-56 223.0 146 76.0
Cpa.g.sc1182.1 Carica papaya HOM05D003870 ORTHO05D004567 1.5e-56 223.0 146 76.7
FAN02G0928 Fragaria x ananassa HOM05D003870 ORTHO05D004567 1.9e-56 222.6 146 77.4
Aa31LG10G2680 Aethionema arabicum HOM05D003870 ORTHO05D004567 2.5e-56 222.2 146 76.0
SGA_v2.0_scaffold69G23361 Striga asiatica HOM05D003870 ORTHO05D004567 3.3e-56 221.9 147 78.9
MSTRG.11054 Avicennia marina HOM05D003870 ORTHO05D004567 4.3e-56 221.5 146 76.0
EL10Ac9g22029 Beta vulgaris HOM05D003870 ORTHO05D004567 4.3e-56 221.5 146 76.0
AUR62011659 Chenopodium quinoa HOM05D003870 ORTHO05D004567 4.3e-56 221.5 146 76.7
THA.LOC104810527 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 4.3e-56 221.5 147 78.2
Duzib160G0587 Durio zibethinus HOM05D003870 ORTHO05D004567 5.6e-56 221.1 146 78.1
Rhsim08G0223300 Rhododendron simsii HOM05D003870 ORTHO05D004567 5.6e-56 221.1 147 77.6
FvH4_6g31740 Fragaria vesca HOM05D003870 ORTHO05D004567 9.6e-56 220.3 146 76.7
FAN09G1730 Fragaria x ananassa HOM05D003870 ORTHO05D004567 1.3e-55 219.9 146 76.0
THA.LOC104817982 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 3.7e-55 218.4 146 75.3
TWI12G1021 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 3.7e-55 218.4 146 77.4
BcaB04g17164 Brassica carinata HOM05D003870 ORTHO05D004567 8.1e-55 217.2 144 75.7
Oeu024071.1 Olea europaea HOM05D003870 ORTHO05D004567 1.4e-54 216.5 137 81.8
unitig_0.g2124 Utricularia gibba HOM05D003870 ORTHO05D004567 1.8e-54 216.1 146 79.5
vmacro16969 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 3.1e-54 215.3 146 76.7
CDE02G4568 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 4.0e-54 214.9 147 76.2
vmacro18888 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 6.9e-54 214.2 147 76.2
ATR0315G019 Amborella trichopoda HOM05D003870 ORTHO05D004567 2.0e-53 212.6 146 78.1
Actinidia32731 Actinidia chinensis HOM05D003870 ORTHO05D004567 5.8e-53 211.1 130 79.2
CDE04G3706 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 9.9e-53 210.3 147 74.8
Sc15g0001350 Simmondsia chinensis HOM05D003870 ORTHO05D004567 1.7e-52 209.5 145 74.5
TWI75G1362 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 1.7e-52 209.5 147 74.8
Glyma.13G357300 Glycine max HOM05D003870 ORTHO05D004567 2.9e-52 208.8 138 79.7
Rhsim12G0200100 Rhododendron simsii HOM05D003870 ORTHO05D004567 2.9e-52 208.8 146 74.7
Sopen00g011820 Solanum pennellii HOM05D003870 ORTHO05D004567 3.8e-52 208.4 104 97.1
Hund00643 Selenicereus undatus HOM05D003870 ORTHO05D004567 4.9e-52 208.0 147 71.4
Os05g0560000 Oryza sativa ssp. japonica HOM05D003870 ORTHO05D004567 4.6e-50 201.4 144 73.6
Zm00001eb295610 Zea mays HOM05D003870 ORTHO05D004567 1.8e-49 199.5 147 73.5
AUR62016482 Chenopodium quinoa HOM05D003870 ORTHO05D004567 1.6e-47 193.0 146 70.5
AL1G60400 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 8.2e-47 190.7 103 87.4
SEGI_14279 Sequoiadendron giganteum HOM05D003870 ORTHO05D004567 1.8e-46 189.5 143 69.2
BcaC08g43379 Brassica carinata HOM05D003870 ORTHO05D004567 4.5e-45 184.9 102 86.3
TPR.G37200 Trifolium pratense HOM05D003870 ORTHO05D004567 7.6e-45 184.1 147 69.4
Pp3c15_19390 Physcomitrium patens HOM05D003870 ORTHO05D004567 6.3e-39 164.5 138 57.2
Pp3c9_19520 Physcomitrium patens HOM05D003870 ORTHO05D004567 1.8e-38 162.9 136 58.8
HPP92_021482 Vanilla planifolia HOM05D003870 ORTHO05D004567 2.4e-38 162.5 136 67.6
Mapoly0009s0008 Marchantia polymorpha HOM05D003870 ORTHO05D004567 1.9e-35 152.9 144 57.6
Peaxi162Scf00207g00951 Petunia axillaris HOM05D003870 ORTHO05D004567 1.8e-33 146.4 146 63.0
CBR_g31512 Chara braunii HOM05D003870 ORTHO05D004567 1.1e-32 143.7 143 55.2
Duzib192G0641 Durio zibethinus HOM05D003870 ORTHO05D004567 3.3e-32 142.1 99 75.8
C01p48190 Brassica napus HOM05D003870 ORTHO05D004567 3.1e-30 135.6 146 54.8
BolC1t04783H Brassica oleracea HOM05D003870 ORTHO05D004567 1.2e-29 133.7 146 54.8
Dinv30483 Davidia involucrata HOM05D003870 ORTHO05D004567 1.1e-27 127.1 86 76.7
HanXRQChr10g0313451 Helianthus annuus HOM05D003870 ORTHO05D004567 1.6e-26 123.2 86 73.3
MD17G1191200 Malus domestica HOM05D003870 ORTHO05D004567 1.4e-25 120.2 86 70.9
ECA247G2331 Erigeron canadensis HOM05D003870 ORTHO05D004567 3.3e-24 115.5 73 75.3
MD17G1191400 Malus domestica HOM05D003870 ORTHO05D004567 1.1e-22 110.5 60 90.0
MCO07G351 Micromonas commoda HOM05D003870 ORTHO05D004567 1.5e-16 90.1 126 42.1
MD10G1187500 Malus domestica HOM05D003870 ORTHO05D004567 4.1e-14 82.0 65 63.1
MD14G1193300 Malus domestica HOM05D003870 ORTHO05D004567 3.5e-13 79.0 65 63.1
unitig_747.g21485 Utricularia gibba HOM05D003870 ORTHO05D004567 2.9e-12 75.9 143 41.3
Zm00001eb343540 Zea mays HOM05D003870 ORTHO05D004567 1.1e-11 73.9 131 43.5
Cre07.g330250 Chlamydomonas reinhardtii HOM05D003870 ORTHO05D004567 7.2e-11 71.2 123 34.1
MD02G1178900 Malus domestica HOM05D003870 ORTHO05D004567 1.0e-09 67.4 33 90.9


User provided reference genes

Program Settings