Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 5.2e-105 384.4 198 100.0
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 2.2e-103 379.0 198 98.5
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 1.9e-91 339.3 198 88.4
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 1.1e-75 287.0 182 80.8
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.5e-75 286.6 195 77.4
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 2.8e-74 282.3 200 75.0
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 2.0e-72 276.2 193 77.2
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.0e-72 276.2 215 70.2
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 5.8e-72 274.6 199 73.9
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 3.8e-71 271.9 198 73.2
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 3.8e-71 271.9 200 72.0
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 5.5e-70 268.1 195 72.8
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.5e-69 265.4 201 71.6
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.5e-69 265.4 201 71.6
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.6e-69 265.0 204 71.6
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 4.6e-69 265.0 193 73.6
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 6.0e-69 264.6 188 73.4
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 7.9e-69 264.2 192 72.9
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 7.9e-69 264.2 196 74.5
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 7.9e-69 264.2 201 70.1
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 1.0e-68 263.8 196 74.0
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.3e-68 263.5 171 81.9
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 1.3e-68 263.5 198 70.2
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 1.8e-68 263.1 192 72.4
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 2.3e-68 262.7 188 73.4
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 5.1e-68 261.5 197 70.1
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 8.7e-68 260.8 192 70.3
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 1.1e-67 260.4 198 69.2
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 1.5e-67 260.0 201 68.7
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 1.5e-67 260.0 180 76.1
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 1.9e-67 259.6 209 67.5
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 2.5e-67 259.2 207 68.1
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 3.3e-67 258.8 201 68.7
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 4.3e-67 258.5 185 73.5
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 5.6e-67 258.1 201 69.7
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 5.6e-67 258.1 193 71.5
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 7.4e-67 257.7 178 74.7
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 1.3e-66 256.9 193 68.9
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.6e-66 256.5 192 68.8
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.6e-66 256.5 192 68.8
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 1.6e-66 256.5 193 71.0
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.6e-66 256.5 205 68.8
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.1e-66 256.1 180 75.0
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 2.1e-66 256.1 180 75.0
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 2.1e-66 256.1 180 71.1
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 2.8e-66 255.8 192 71.4
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 3.7e-66 255.4 197 70.1
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 3.7e-66 255.4 197 70.1
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 4.8e-66 255.0 205 64.4
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 4.8e-66 255.0 193 68.4
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 4.8e-66 255.0 198 68.2
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 6.2e-66 254.6 189 70.4
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 6.2e-66 254.6 189 70.4
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 8.1e-66 254.2 199 68.3
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 8.1e-66 254.2 173 74.0
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 8.1e-66 254.2 193 70.5
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 1.1e-65 253.8 198 67.7
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.1e-65 253.8 180 74.4
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 1.4e-65 253.4 174 74.7
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 1.4e-65 253.4 173 75.1
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.8e-65 253.1 189 70.9
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.4e-65 252.7 198 67.7
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 3.1e-65 252.3 201 66.2
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 3.1e-65 252.3 188 70.7
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 5.3e-65 251.5 180 73.3
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 5.3e-65 251.5 180 73.3
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 5.3e-65 251.5 181 72.4
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 6.9e-65 251.1 196 69.4
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 6.9e-65 251.1 193 64.8
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 9.0e-65 250.8 182 72.5
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 9.0e-65 250.8 190 66.8
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 1.2e-64 250.4 186 68.3
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 1.2e-64 250.4 180 69.4
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 1.5e-64 250.0 193 67.4
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 2.0e-64 249.6 192 65.6
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 2.0e-64 249.6 206 67.0
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 3.4e-64 248.8 176 69.3
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 5.8e-64 248.1 189 65.6
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 7.6e-64 247.7 188 69.7
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 1.0e-63 247.3 201 67.2
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.3e-63 246.9 199 67.3
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.3e-63 246.9 180 70.6
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.7e-63 246.5 170 73.5
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 8.4e-63 244.2 196 65.8
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.1e-62 243.8 202 64.4
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 1.4e-62 243.4 198 67.2
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 1.4e-62 243.4 198 67.2
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 4.2e-62 241.9 163 76.1
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 5.5e-62 241.5 184 68.5
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 5.5e-62 241.5 199 65.8
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 7.1e-62 241.1 182 70.3
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 7.1e-62 241.1 194 64.4
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 7.1e-62 241.1 189 68.8
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 9.3e-62 240.7 198 64.1
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.2e-61 240.4 182 69.2
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 2.7e-61 239.2 198 66.2
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 3.5e-61 238.8 191 64.9
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.6e-61 238.4 157 77.7
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 6.0e-61 238.0 194 65.5
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 6.0e-61 238.0 183 67.8
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 1.0e-60 237.3 194 63.9
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.3e-60 236.9 193 65.3
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 2.3e-60 236.1 214 64.0
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 2.3e-60 236.1 180 66.7
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 3.0e-60 235.7 174 68.4
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 3.9e-60 235.3 192 64.6
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 3.9e-60 235.3 195 64.1
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 6.7e-60 234.6 188 68.1
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 6.7e-60 234.6 195 65.6
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 1.5e-59 233.4 188 67.6
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.9e-59 233.0 184 65.2
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 1.3e-58 230.3 180 65.6
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 4.8e-58 228.4 191 63.9
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 4.8e-58 228.4 283 49.5
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 3.1e-57 225.7 158 72.8
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 4.5e-56 221.9 193 60.1
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 7.6e-56 221.1 128 89.8
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 1.0e-55 220.7 192 63.5
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 1.3e-55 220.3 149 72.5
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.1e-54 217.2 188 63.8
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 6.1e-53 211.5 191 61.3
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.4e-49 200.3 170 68.2
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 1.8e-49 199.9 129 80.6
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 4.1e-49 198.7 152 69.1
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 4.5e-48 195.3 197 58.9
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 2.7e-45 186.0 171 57.9
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 2.3e-44 183.0 197 55.3
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 2.3e-44 183.0 122 76.2
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 1.7e-42 176.8 186 48.9
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 1.1e-41 174.1 118 72.9
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 1.4e-41 173.7 173 54.9
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 1.5e-40 170.2 201 51.7
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 7.7e-40 167.9 152 56.6
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 1.7e-39 166.8 103 78.6
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 3.8e-39 165.6 183 55.2
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 7.2e-38 161.4 108 79.6
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 2.6e-35 152.9 86 86.0
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 3.3e-35 152.5 163 49.1
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 7.0e-33 144.8 182 48.9
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.0e-31 141.0 151 49.0
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 7.2e-30 134.8 161 44.7
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 3.6e-29 132.5 104 68.3
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.7e-23 113.6 172 43.6
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 2.8e-18 96.3 70 62.9
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 4.8e-18 95.5 125 48.8
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 4.1e-17 92.4 57 73.7
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 1.6e-16 90.5 70 60.0
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 2.7e-16 89.7 57 73.7
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.7e-15 87.0 211 36.0
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 8.0e-13 78.2 173 31.2
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 1.8e-12 77.0 147 32.7
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 1.2e-11 74.3 73 52.1
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 6.3e-10 68.6 62 59.7
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 6.3e-10 68.6 56 58.9
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 4.1e-09 65.9 40 82.5


User provided reference genes

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