Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 2343.5 1186 100.0
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 2333.1 1186 99.3
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 2234.5 1186 94.8
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 2206.4 1203 92.7
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 2144.0 1219 89.8
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 2144.0 1185 91.4
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 1900.6 1201 80.2
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1876.3 1204 79.5
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1869.0 1201 79.0
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1852.4 1203 78.3
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1832.8 1201 77.2
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1827.0 1201 76.9
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1825.1 1200 76.5
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1822.0 1205 77.1
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 1808.1 1202 76.0
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1804.6 1201 75.8
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1799.3 1204 76.1
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1797.7 1199 76.1
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1796.9 1203 76.0
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1793.1 1201 76.9
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1792.7 1287 73.0
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1779.2 1286 72.2
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1779.2 1286 72.2
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1778.1 1204 75.1
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 1775.8 1197 75.3
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1768.1 1200 75.1
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1767.3 1203 74.4
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1766.1 1200 75.1
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1765.7 1201 75.0
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1758.0 1201 74.4
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1757.7 1197 74.5
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 1750.7 1202 74.3
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1750.3 1293 70.0
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1749.9 1200 74.1
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1749.2 1202 73.9
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1746.9 1198 74.0
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1746.9 1202 74.0
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1746.5 1194 73.8
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1744.6 1193 74.4
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1741.1 1199 73.6
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1739.5 1201 73.5
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1739.2 1199 73.1
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1737.2 1188 73.7
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1735.7 1199 73.6
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1734.2 1204 73.3
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1734.2 1197 74.1
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1733.0 1203 72.9
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1731.5 1195 73.6
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 1729.5 1195 73.6
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 1729.1 1195 73.6
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1728.4 1195 73.6
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 1727.2 1195 73.6
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1724.1 1210 72.1
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 1722.6 1195 73.4
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1721.1 1219 72.1
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1719.9 1199 73.7
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1719.9 1219 71.8
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1719.5 1202 73.0
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1717.6 1200 73.8
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 1710.7 1194 73.0
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 1709.9 1193 73.0
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 1709.5 1197 72.4
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1709.1 1219 71.6
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1708.3 1202 73.1
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1707.6 1202 72.7
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1707.2 1343 68.5
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1704.1 1196 72.2
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 1701.4 1194 72.6
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1695.2 1197 72.3
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1695.2 1196 72.5
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1690.6 1197 72.3
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1689.5 1197 72.2
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1687.5 1195 72.0
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1687.5 1199 72.4
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1686.0 1129 76.4
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1682.2 1195 72.0
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1679.5 1201 71.1
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1675.2 1183 71.9
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1653.3 1208 69.4
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1643.6 1097 76.6
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1642.1 1186 71.4
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1641.7 1199 70.6
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1633.2 1206 70.9
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 1616.7 1200 69.9
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1581.6 1212 66.8
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1573.9 1198 68.4
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1543.5 1192 66.1
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1508.0 1042 73.3
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1507.7 1043 73.2
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 1502.3 1192 64.4
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1492.2 1012 75.2
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 1483.4 1037 73.6
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 1471.8 1207 63.2
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1440.6 1023 72.6
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1400.2 993 72.5
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1392.5 978 72.9
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1387.5 982 71.8
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1378.6 1052 66.7
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1349.3 897 77.3
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1293.1 827 78.2
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1271.9 934 70.7
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 0.0e+00 1268.8 1211 54.6
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 0.0e+00 1260.0 871 71.9
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 0.0e+00 1171.8 1225 51.4
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 0.0e+00 1095.5 903 63.0
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 0.0e+00 1077.0 1208 48.9
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 7.0e-306 1054.3 1209 48.4
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 4.3e-271 938.7 1185 44.7
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 2.2e-267 926.4 1321 41.7
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 9.6e-247 857.8 518 83.8
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 6.5e-243 845.1 1225 41.0
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.4e-226 790.8 1134 41.5
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 1.6e-188 664.5 424 79.7
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.3e-145 521.9 484 60.7
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 6.9e-144 516.2 737 42.6
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 2.1e-140 504.6 306 79.4
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 2.8e-137 494.2 324 75.0
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 1.2e-135 488.8 429 60.8
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 3.4e-127 460.7 323 69.3
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 7.4e-122 443.0 347 67.4
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 9.4e-117 426.0 292 75.0
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 3.7e-113 414.1 328 69.2
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 7.2e-101 373.2 309 62.8
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 2.8e-97 361.3 361 53.2
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 1.1e-85 322.8 292 54.1
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 3.0e-83 314.7 256 64.5
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 3.6e-76 291.2 386 47.4
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 5.2e-59 234.2 161 70.8
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 7.5e-58 230.3 262 50.4
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 1.6e-47 196.1 124 77.4
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 1.3e-46 193.0 116 76.7
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.1e-44 185.7 138 62.3
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 2.8e-44 185.3 114 75.4
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 3.1e-43 181.8 202 54.0
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 4.4e-42 177.9 163 56.4
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 3.5e-39 168.3 727 25.6
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.5e-37 162.9 256 40.2
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.4e-35 156.4 194 48.5
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 4.2e-32 144.8 162 51.9
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 1.8e-30 139.4 81 80.2
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.7e-25 122.9 163 44.2
SEGI_40067 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 1.8e-19 102.8 74 64.9
Atru.chr7.2501 Acer truncatum HOM05D004589 ORTHO05D005848 2.5e-16 92.4 59 72.9
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 4.6e-15 88.2 62 69.4
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 4.3e-13 81.6 220 31.8
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 5.7e-13 81.3 47 74.5
arahy.Tifrunner.gnm1.ann1.E2IMN8 Arachis hypogaea HOM05D004589 ORTHO05D005848 9.0e-11 73.9 48 64.6
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 5.9e-10 71.2 74 63.5
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 5.9e-10 71.2 74 63.5
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 7.6e-10 70.9 60 70.0
Cc00_g21220 Coffea canephora HOM05D004589 ORTHO05D005848 1.0e-09 70.5 55 61.8
Sabra19G0134500 Salix brachista HOM05D001978 ORTHO05D000005 2.2e-09 69.3 70 55.7
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 7.2e-08 64.3 38 73.7


User provided reference genes

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