Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g024020 Solanum pennellii HOM05D003638 ORTHO05D003202 2.0e-53 212.2 111 100.0
Solyc07g007170.3 Solanum lycopersicum HOM05D003638 ORTHO05D003202 8.4e-52 206.8 111 97.3
Sopen07g003220 Solanum pennellii HOM05D003638 ORTHO05D003202 8.4e-52 206.8 111 97.3
PGSC0003DMG402030736 Solanum tuberosum HOM05D003638 ORTHO05D003202 5.6e-48 194.1 109 93.6
Nitab4.5_0007535g0020 Nicotiana tabacum HOM05D003638 ORTHO05D003202 2.1e-42 175.6 111 83.8
Nitab4.5_0001021g0070 Nicotiana tabacum HOM05D003638 ORTHO05D003202 1.5e-40 169.5 109 81.7
Peaxi162Scf00391g00019 Petunia axillaris HOM05D003638 ORTHO05D003202 1.8e-30 136.0 110 67.3
Nitab4.5_0001555g0090 Nicotiana tabacum HOM05D003638 ORTHO05D003202 2.2e-28 129.0 95 72.6
Solyc07g007160.3 Solanum lycopersicum HOM05D003638 ORTHO05D003202 6.4e-28 127.5 95 71.6
PGSC0003DMG401030736 Solanum tuberosum HOM05D003638 ORTHO05D003202 6.4e-28 127.5 95 71.6
Sopen07g003210 Solanum pennellii HOM05D003638 ORTHO05D003202 8.4e-28 127.1 95 71.6
Nitab4.5_0001751g0040 Nicotiana tabacum HOM05D003638 ORTHO05D003202 5.8e-21 104.4 98 59.2
Manes.06G041300 Manihot esculenta HOM05D003638 ORTHO05D003202 4.9e-20 101.3 111 54.1
Nitab4.5_0001021g0080 Nicotiana tabacum HOM05D003638 ORTHO05D003202 3.2e-19 98.6 106 56.6
Duzib168G1473 Durio zibethinus HOM05D003638 ORTHO05D003202 4.2e-19 98.2 95 61.1
Thecc.09G141300 Theobroma cacao HOM05D003638 ORTHO05D003202 5.5e-19 97.8 95 60.0
Peaxi162Scf00108g00110 Petunia axillaris HOM05D003638 ORTHO05D003202 7.1e-19 97.4 96 60.4
GSVIVG01012890001 Vitis vinifera HOM05D003638 ORTHO05D003202 9.3e-19 97.1 110 54.5
Gorai.013G237500 Gossypium raimondii HOM05D003638 ORTHO05D003202 4.6e-18 94.7 96 60.4
CANSAT11G2120 Cannabis sativa HOM05D003638 ORTHO05D003202 7.9e-18 94.0 109 56.9
ClCG02G017240 Citrullus lanatus HOM05D003638 ORTHO05D003202 7.9e-18 94.0 109 51.4
Cc06_g07440 Coffea canephora HOM05D003638 ORTHO05D003202 1.0e-17 93.6 102 57.8
TAR383G0618 Trochodendron aralioides HOM05D003638 ORTHO05D003202 1.0e-17 93.6 95 58.9
Gohir.A13G203100 Gossypium hirsutum HOM05D003638 ORTHO05D003202 2.3e-17 92.4 96 60.4
Gohir.D13G208400 Gossypium hirsutum HOM05D003638 ORTHO05D003202 2.3e-17 92.4 96 60.4
Dinv41427 Davidia involucrata HOM05D003638 ORTHO05D003202 3.0e-17 92.0 100 56.0
CsaV3_2G003550 Cucumis sativus L. HOM05D003638 ORTHO05D003202 5.1e-17 91.3 97 53.6
Hma1.2p1_0182F.1_g080450 Hydrangea macrophylla HOM05D003638 ORTHO05D003202 5.1e-17 91.3 95 57.9
Oeu055917.1 Olea europaea HOM05D003638 ORTHO05D003202 5.1e-17 91.3 94 61.7
TAR626G0601 Trochodendron aralioides HOM05D003638 ORTHO05D003202 5.1e-17 91.3 95 54.7
TWI63G0270 Tripterygium wilfordii HOM05D003638 ORTHO05D003202 6.7e-17 90.9 96 56.2
Nitab4.5_0005330g0090 Nicotiana tabacum HOM05D003638 ORTHO05D003202 8.7e-17 90.5 94 55.3
Oeu051707.1 Olea europaea HOM05D003638 ORTHO05D003202 1.1e-16 90.1 96 60.4
CiPaw.15G182800 Carya illinoinensis HOM05D003638 ORTHO05D003202 1.9e-16 89.4 95 54.7
CSS0017335 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 2.5e-16 89.0 97 56.7
MELO3C004441.2 Cucumis melo HOM05D003638 ORTHO05D003202 5.7e-16 87.8 109 47.7
Dinv22136 Davidia involucrata HOM05D003638 ORTHO05D003202 7.4e-16 87.4 97 55.7
Dinv42915 Davidia involucrata HOM05D003638 ORTHO05D003202 7.4e-16 87.4 97 55.7
Dinv43185 Davidia involucrata HOM05D003638 ORTHO05D003202 7.4e-16 87.4 97 55.7
RcHm_v2.0_Chr2g0086711 Rosa chinensis HOM05D003638 ORTHO05D003202 7.4e-16 87.4 103 54.4
CiPaw.16G118000 Carya illinoinensis HOM05D003638 ORTHO05D003202 9.7e-16 87.0 95 52.6
MD02G1013200 Malus domestica HOM05D003638 ORTHO05D003202 1.6e-15 86.3 98 56.1
Duzib150G0024 Durio zibethinus HOM05D003638 ORTHO05D003202 2.8e-15 85.5 111 53.2
Haze_19322 Corylus avellana HOM05D003638 ORTHO05D003202 6.3e-15 84.3 95 54.7
Gohir.A08G095362 Gossypium hirsutum HOM05D003638 ORTHO05D003202 6.3e-15 84.3 95 53.7
Ciclev10009499m.g Citrus clementina HOM05D003638 ORTHO05D003202 1.1e-14 83.6 109 49.5
Cfa020896 Carpinus fangiana HOM05D003638 ORTHO05D003202 1.4e-14 83.2 110 48.2
ClCG06G012030 Citrullus lanatus HOM05D003638 ORTHO05D003202 1.4e-14 83.2 95 54.7
Lj6g0008260 Lotus japonicus HOM05D003638 ORTHO05D003202 1.4e-14 83.2 105 48.6
Sed0014564 Sechium edule HOM05D003638 ORTHO05D003202 1.4e-14 83.2 105 48.6
Actinidia21912 Actinidia chinensis HOM05D003638 ORTHO05D003202 2.4e-14 82.4 95 53.7
Cfa020895 Carpinus fangiana HOM05D003638 ORTHO05D003202 2.4e-14 82.4 97 54.6
Potri.018G114500 Populus trichocarpa HOM05D003638 ORTHO05D003202 2.4e-14 82.4 112 51.8
Duzib187G0526 Durio zibethinus HOM05D003638 ORTHO05D003202 3.1e-14 82.0 96 52.1
Cpa.g.sc46.85 Carica papaya HOM05D003638 ORTHO05D003202 4.1e-14 81.6 97 53.6
FAN23G0723 Fragaria x ananassa HOM05D003638 ORTHO05D003202 4.1e-14 81.6 103 52.4
FAN26G1151 Fragaria x ananassa HOM05D003638 ORTHO05D003202 4.1e-14 81.6 103 52.4
Actinidia04244 Actinidia chinensis HOM05D003638 ORTHO05D003202 6.9e-14 80.9 96 53.1
CSS0018942 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 6.9e-14 80.9 96 52.1
vmacro21884 Vaccinium macrocarpon HOM05D003638 ORTHO05D003202 9.0e-14 80.5 106 49.1
Potri.006G190300 Populus trichocarpa HOM05D003638 ORTHO05D003202 1.2e-13 80.1 122 48.4
Glyma.09G096300 Glycine max HOM05D003638 ORTHO05D003202 1.5e-13 79.7 95 50.5
Glyma.15G201800 Glycine max HOM05D003638 ORTHO05D003202 2.0e-13 79.3 94 48.9
Lalb_Chr23g0275841 Lupinus albus HOM05D003638 ORTHO05D003202 2.0e-13 79.3 94 50.0
MBI15_g25866_MAGBIO Magnolia biondii HOM05D003638 ORTHO05D003202 2.0e-13 79.3 95 53.7
CSS0003684 Camellia sinensis var. sinensis HOM05D003638 ORTHO05D003202 3.4e-13 78.6 96 51.0
Medtr2g461020 Medicago truncatula HOM05D003638 ORTHO05D003202 3.4e-13 78.6 95 49.5
Psat1g023080 Pisum sativum HOM05D003638 ORTHO05D003202 3.4e-13 78.6 94 51.1
FAN19G2555 Fragaria x ananassa HOM05D003638 ORTHO05D003202 4.5e-13 78.2 103 49.5
FAN28G0590 Fragaria x ananassa HOM05D003638 ORTHO05D003202 4.5e-13 78.2 103 49.5
FvH4_1g01750 Fragaria vesca HOM05D003638 ORTHO05D003202 7.6e-13 77.4 103 49.5
MD15G1160000 Malus domestica HOM05D003638 ORTHO05D003202 7.6e-13 77.4 94 55.3
Aqoxy7G03537 Aquilegia oxysepala HOM05D003638 ORTHO05D003202 2.9e-12 75.5 100 51.0
MELO3C010264.2 Cucumis melo HOM05D003638 ORTHO05D003202 2.9e-12 75.5 99 49.5
Lalb_Chr08g0233671 Lupinus albus HOM05D003638 ORTHO05D003202 5.0e-12 74.7 97 49.5
Duzib187G0899 Durio zibethinus HOM05D003638 ORTHO05D003202 2.5e-11 72.4 95 48.4
Gohir.A06G050200 Gossypium hirsutum HOM05D003638 ORTHO05D003202 2.5e-11 72.4 93 50.5
QL02p091197 Quercus lobata HOM05D003638 ORTHO05D003202 2.5e-11 72.4 101 45.5
arahy.Tifrunner.gnm1.ann1.ZD4V4J Arachis hypogaea HOM05D003638 ORTHO05D003202 9.4e-11 70.5 98 44.9
Sabra18G0097400 Salix brachista HOM05D003638 ORTHO05D003202 9.4e-11 70.5 106 45.3
Rhsim01G0052400 Rhododendron simsii HOM05D003638 ORTHO05D003202 1.2e-10 70.1 106 44.3
Haze_19323 Corylus avellana HOM05D003638 ORTHO05D003202 1.6e-10 69.7 83 54.2
Gorai.010G056400 Gossypium raimondii HOM05D003638 ORTHO05D003202 1.6e-10 69.7 96 47.9
Sp3g28870 Schrenkiella parvula HOM05D003638 ORTHO05D003202 1.6e-10 69.7 102 47.1
Sed0026668 Sechium edule HOM05D003638 ORTHO05D003202 2.1e-10 69.3 99 51.5
THA.LOC104808922 Tarenaya hassleriana HOM05D003638 ORTHO05D003202 2.1e-10 69.3 109 45.9
CsaV3_1G028490 Cucumis sativus L. HOM05D003638 ORTHO05D003202 7.9e-10 67.4 94 50.0
Manes.14G138300 Manihot esculenta HOM05D003638 ORTHO05D003202 7.9e-10 67.4 113 43.4
Sc14g0000080 Simmondsia chinensis HOM05D003638 ORTHO05D003202 7.9e-10 67.4 105 46.7
Lalb_Chr08g0233781 Lupinus albus HOM05D003638 ORTHO05D003202 1.0e-09 67.0 102 45.1
TPR.G25664 Trifolium pratense HOM05D003638 ORTHO05D003202 1.0e-09 67.0 96 46.9
SEGI_35833 Sequoiadendron giganteum HOM05D003638 ORTHO05D003202 1.4e-09 66.6 100 45.0
SEGI_39004 Sequoiadendron giganteum HOM05D003638 ORTHO05D003202 1.4e-09 66.6 100 45.0
Migut.K00380 Erythranthe guttata HOM05D003638 ORTHO05D003202 1.8e-09 66.2 116 44.0
Ah.14g078720 Amaranthus hybridus HOM05D003638 ORTHO05D003202 2.3e-09 65.9 96 50.0
CiPaw.15G182700 Carya illinoinensis HOM05D003638 ORTHO05D003202 3.0e-09 65.5 95 49.5
HanXRQChr12g0357031 Helianthus annuus HOM05D003638 ORTHO05D003202 5.1e-09 64.7 96 46.9
BcaC06g36068 Brassica carinata HOM05D003638 ORTHO05D003202 6.7e-09 64.3 119 40.3
A07p05140 Brassica napus HOM05D003638 ORTHO05D003202 6.7e-09 64.3 102 45.1
C07p08290 Brassica napus HOM05D003638 ORTHO05D003202 6.7e-09 64.3 119 40.3
BolC7t41242H Brassica oleracea HOM05D003638 ORTHO05D003202 6.7e-09 64.3 119 40.3
BraA07t28311Z Brassica rapa HOM05D003638 ORTHO05D003202 6.7e-09 64.3 119 40.3
QL02p091214 Quercus lobata HOM05D003638 ORTHO05D003202 6.7e-09 64.3 106 46.2
PGR102G3190 Punica granatum HOM05D003638 ORTHO05D003202 8.8e-09 63.9 93 46.2
CARHR105850 Cardamine hirsuta HOM05D003638 ORTHO05D003202 1.1e-08 63.5 116 42.2
Phvul.009G209800 Phaseolus vulgaris HOM05D003638 ORTHO05D003202 1.5e-08 63.2 94 42.6
MSTRG.26318 Avicennia marina HOM05D003638 ORTHO05D003202 1.9e-08 62.8 104 40.4
EL10Ac8g18824 Beta vulgaris HOM05D003638 ORTHO05D003202 1.9e-08 62.8 90 47.8
BcaB03g16305 Brassica carinata HOM05D003638 ORTHO05D003202 1.9e-08 62.8 118 40.7
BcaB03g16307 Brassica carinata HOM05D003638 ORTHO05D003202 1.9e-08 62.8 118 40.7
Thhalv10022864m.g Eutrema salsugineum HOM05D003638 ORTHO05D003202 1.9e-08 62.8 104 43.3
arahy.Tifrunner.gnm1.ann1.8W4I3Q Arachis hypogaea HOM05D003638 ORTHO05D003202 2.5e-08 62.4 100 42.0
SGA_v2.0_scaffold278G46736 Striga asiatica HOM05D003638 ORTHO05D003202 2.5e-08 62.4 103 43.7
VMungo1309G1330 Vigna mungo HOM05D003638 ORTHO05D003202 2.5e-08 62.4 93 45.2
Aa31LG8G12110 Aethionema arabicum HOM05D003638 ORTHO05D003202 3.3e-08 62.0 95 46.3
AT2G15580 Arabidopsis thaliana HOM05D003638 ORTHO05D003202 3.3e-08 62.0 117 41.0
MSTRG.26319 Avicennia marina HOM05D003638 ORTHO05D003202 3.3e-08 62.0 114 45.6
Glyma.17G105300 Glycine max HOM05D003638 ORTHO05D003202 3.3e-08 62.0 111 42.3
Phvul.003G174500 Phaseolus vulgaris HOM05D003638 ORTHO05D003202 3.3e-08 62.0 108 44.4
DCAR_014923 Daucus carota HOM05D003638 ORTHO05D003202 4.3e-08 61.6 109 46.8
TPR.G15775 Trifolium pratense HOM05D003638 ORTHO05D003202 4.3e-08 61.6 108 45.4
BcaB08g34596 Brassica carinata HOM05D003638 ORTHO05D003202 5.7e-08 61.2 94 46.8
Medtr4g116480 Medicago truncatula HOM05D003638 ORTHO05D003202 5.7e-08 61.2 103 47.6
A03p45490 Brassica napus HOM05D003638 ORTHO05D003202 7.4e-08 60.8 94 46.8
BraA03t13679Z Brassica rapa HOM05D003638 ORTHO05D003202 7.4e-08 60.8 94 46.8
Manes.14G138400 Manihot esculenta HOM05D003638 ORTHO05D003202 7.4e-08 60.8 97 46.4
BcaC01g03063 Brassica carinata HOM05D011508 ORTHO05D017548 9.7e-08 60.5 107 43.9
C03p56460 Brassica napus HOM05D003638 ORTHO05D003202 9.7e-08 60.5 94 46.8
BolC3t17933H Brassica oleracea HOM05D003638 ORTHO05D003202 9.7e-08 60.5 94 46.8
AL3G47340 Arabidopsis lyrata HOM05D003638 ORTHO05D003202 1.3e-07 60.1 116 41.4
MSTRG.6091 Avicennia marina HOM05D003638 ORTHO05D003202 1.7e-07 59.7 109 42.2
Carub.0003s2935 Capsella rubella HOM05D003638 ORTHO05D003202 2.2e-07 59.3 118 39.0
A03p45520 Brassica napus HOM05D003638 ORTHO05D003202 4.8e-07 58.2 94 45.7
BraA03t13684Z Brassica rapa HOM05D003638 ORTHO05D003202 4.8e-07 58.2 94 45.7
Eucgr.C04088 Eucalyptus grandis HOM05D003638 ORTHO05D003202 4.8e-07 58.2 98 45.9
HanXRQChr05g0137981 Helianthus annuus HOM05D003638 ORTHO05D003202 1.1e-06 57.0 94 45.7
Lsat_1_v5_gn_8_63100 Lactuca sativa HOM05D003638 ORTHO05D003202 1.4e-06 56.6 94 43.6
arahy.Tifrunner.gnm1.ann1.Y03F6U Arachis hypogaea HOM05D003638 ORTHO05D003202 2.4e-06 55.8 103 41.7
Nn8g39712 Nelumbo nucifera HOM05D003638 ORTHO05D003202 3.1e-06 55.5 68 52.9
arahy.Tifrunner.gnm1.ann1.80FEVW Arachis hypogaea HOM05D003638 ORTHO05D003202 4.1e-06 55.1 104 44.2
arahy.Tifrunner.gnm1.ann1.V8YXJU Arachis hypogaea HOM05D003638 ORTHO05D003202 4.1e-06 55.1 104 41.3
ECA234G1438 Erigeron canadensis HOM05D003638 ORTHO05D003202 4.1e-06 55.1 101 49.5
Nn2g12242 Nelumbo nucifera HOM05D003638 ORTHO05D003202 5.3e-06 54.7 56 55.4
Os02g0798200 Oryza sativa ssp. japonica HOM05D003638 ORTHO05D003202 6.9e-06 54.3 113 38.9
PSO017G4113 Papaver somniferum HOM05D003638 ORTHO05D003202 6.9e-06 54.3 97 43.3
COL.COLO4_24107 Corchorus olitorius HOM05D003638 ORTHO05D003202 9.1e-06 53.9 52 55.8
Psat4g033360 Pisum sativum HOM05D003638 ORTHO05D003202 9.1e-06 53.9 89 47.2
Hund09319 Selenicereus undatus HOM05D003638 ORTHO05D003202 9.1e-06 53.9 96 44.8


User provided reference genes

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