Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 2.5e-189 665.2 328 100.0
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.9e-184 649.0 329 97.9
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.1e-167 592.4 332 89.5
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 9.4e-160 567.0 332 82.8
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 7.5e-141 504.2 265 91.3
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 1.7e-140 503.1 343 73.5
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 8.3e-140 500.7 324 75.9
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 2.0e-138 496.1 335 72.5
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 3.5e-138 495.4 338 73.4
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 3.8e-137 491.9 347 70.6
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 1.2e-135 486.9 336 73.2
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 5.2e-134 481.5 333 72.7
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 3.2e-131 472.2 331 70.7
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 8.6e-129 464.2 318 69.8
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 5.6e-128 461.5 328 68.3
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 4.7e-127 458.4 338 69.5
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 3.1e-126 455.7 333 69.1
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 6.8e-126 454.5 325 68.9
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 6.8e-126 454.5 336 67.0
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 1.5e-125 453.4 324 68.2
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 4.4e-125 451.8 305 71.8
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 4.4e-125 451.8 323 69.0
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 2.9e-124 449.1 330 69.1
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.7e-124 448.7 322 68.3
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 3.7e-124 448.7 336 67.0
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 1.1e-123 447.2 323 67.5
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.4e-123 446.8 330 65.8
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.4e-123 446.8 330 65.8
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 4.1e-123 445.3 329 66.6
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 7.0e-123 444.5 338 66.3
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 7.0e-123 444.5 322 67.7
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 7.0e-123 444.5 316 69.6
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 7.0e-123 444.5 376 61.7
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.2e-122 443.7 320 67.8
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 2.0e-122 443.0 312 70.2
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 3.5e-122 442.2 335 66.6
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 7.8e-122 441.0 329 65.7
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 7.8e-122 441.0 327 66.7
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 3.9e-121 438.7 334 66.2
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 3.9e-121 438.7 328 64.9
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 6.6e-121 438.0 323 66.6
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 6.6e-121 438.0 327 66.7
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 8.6e-121 437.6 326 64.4
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 1.5e-120 436.8 325 67.4
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.9e-120 436.4 334 65.3
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 3.3e-120 435.6 324 64.2
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 1.6e-119 433.3 338 64.2
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 2.1e-119 433.0 325 66.8
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.8e-119 432.6 279 77.8
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 4.7e-119 431.8 324 65.1
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 6.2e-119 431.4 364 61.8
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 6.2e-119 431.4 364 61.8
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 8.1e-119 431.0 315 66.7
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 1.1e-118 430.6 324 64.8
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 1.8e-118 429.9 322 66.5
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 1.8e-118 429.9 332 64.2
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 3.1e-118 429.1 362 60.5
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 4.0e-118 428.7 313 66.5
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 5.2e-118 428.3 265 80.0
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 8.9e-118 427.6 318 67.3
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 1.2e-117 427.2 324 66.4
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 2.0e-117 426.4 337 64.4
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 2.6e-117 426.0 315 66.0
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 1.3e-116 423.7 328 64.9
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 1.3e-116 423.7 328 64.9
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 1.7e-116 423.3 328 64.9
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 4.9e-116 421.8 332 61.4
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 1.1e-115 420.6 381 57.7
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 1.9e-115 419.9 332 63.9
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 3.2e-115 419.1 335 63.6
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 3.2e-115 419.1 377 59.4
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 3.2e-115 419.1 332 63.0
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 1.2e-114 417.2 335 63.0
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 1.2e-114 417.2 334 62.6
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 1.2e-114 417.2 326 62.0
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 3.5e-114 415.6 324 63.6
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 6.6e-113 411.4 321 65.1
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 6.6e-113 411.4 319 64.9
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 6.6e-113 411.4 384 58.6
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 1.1e-112 410.6 331 63.7
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 1.9e-112 409.8 312 66.3
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 1.9e-112 409.8 336 62.2
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 3.3e-112 409.1 299 68.9
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 9.5e-112 407.5 332 61.7
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 2.8e-111 406.0 320 63.4
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 2.8e-111 406.0 310 64.2
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 8.1e-111 404.4 335 60.9
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 4.0e-110 402.1 306 66.0
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 4.9e-108 395.2 246 78.5
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 9.2e-107 391.0 312 62.2
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 3.5e-106 389.0 261 69.7
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 1.9e-104 383.3 410 51.5
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 6.2e-103 378.3 260 68.8
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 5.2e-102 375.2 326 59.5
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 3.8e-100 369.0 308 60.7
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.9e-99 366.7 275 71.3
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 1.6e-98 363.6 250 68.8
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 3.9e-97 359.0 303 61.1
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 8.7e-97 357.8 334 55.7
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 1.9e-96 356.7 310 56.5
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 2.1e-95 353.2 318 58.2
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 2.8e-95 352.8 313 55.6
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 6.9e-94 348.2 206 76.2
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 2.0e-93 346.7 313 58.1
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 2.6e-93 346.3 318 55.7
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 1.6e-90 337.0 349 55.3
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.1e-90 336.7 337 57.9
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 2.7e-90 336.3 310 58.1
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 4.6e-90 335.5 352 52.0
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.0e-89 334.3 326 56.4
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 2.3e-89 333.2 337 57.3
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 8.7e-89 331.3 337 56.7
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.3e-87 327.4 331 51.7
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 3.6e-87 325.9 294 58.2
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.8e-86 323.6 339 55.8
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 1.5e-85 320.5 340 54.7
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 1.3e-84 317.4 265 61.5
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 2.9e-84 316.2 392 49.2
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 3.7e-79 299.3 306 52.3
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 3.7e-79 299.3 247 60.3
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 3.7e-79 299.3 265 58.1
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 1.8e-78 297.0 156 94.2
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 9.0e-78 294.7 269 55.4
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 4.6e-74 282.3 276 52.9
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 4.5e-69 265.8 305 46.2
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.8e-65 253.8 307 47.9
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 1.6e-63 247.3 314 44.3
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 4.5e-61 239.2 290 43.4
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 7.7e-61 238.4 304 43.4
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 1.7e-60 237.3 147 75.5
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.8e-54 217.2 133 71.4
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 3.1e-54 216.5 244 51.2
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 7.9e-50 201.8 113 80.5
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 1.8e-49 200.7 249 42.6
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 2.3e-49 200.3 329 41.9
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 1.1e-48 198.0 157 58.6
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 3.1e-46 189.9 206 45.1
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 3.2e-43 179.9 280 35.7
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 1.2e-42 177.9 259 39.4
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 5.7e-40 169.1 248 44.0
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 1.3e-39 167.9 244 40.6
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 1.8e-33 147.5 88 73.9
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 1.5e-32 144.4 244 35.7
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 3.7e-31 139.8 265 34.7
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 6.1e-26 122.5 405 26.2
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 1.4e-25 121.3 70 81.4
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 1.4e-25 121.3 70 81.4
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.8e-25 120.9 228 33.8
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 3.0e-25 120.2 70 80.0
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.5e-24 117.9 299 29.4
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 7.5e-24 115.5 78 71.8
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 1.8e-22 110.9 113 45.1
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 7.0e-22 109.0 114 42.1
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 4.5e-21 106.3 243 29.6
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 1.7e-20 104.4 303 30.0
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 5.0e-20 102.8 153 38.6
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 5.6e-19 99.4 300 27.7
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 2.1e-18 97.4 201 33.8
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.0e-17 95.1 160 33.8
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 2.4e-14 84.0 60 63.3
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 1.0e-12 78.6 79 55.7
Nitab4.5_0000159g0060 Nicotiana tabacum HOM05D056068 ORTHO05D005020 1.4e-09 68.2 68 51.5
Nitab4.5_0003518g0040 Nicotiana tabacum HOM05D056068 ORTHO05D005020 1.4e-09 68.2 68 51.5
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 3.4e-08 63.5 93 41.9


User provided reference genes

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