Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 2760.7 1434 100.0
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 2392.5 1438 85.3
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 2279.6 1462 83.6
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 0.0e+00 2081.2 1117 98.4
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1987.2 1287 83.4
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 1710.7 1488 63.4
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1664.8 1477 62.6
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1622.4 1453 60.6
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 1611.3 1474 59.9
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 1609.0 1460 61.2
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1605.5 1496 60.3
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 1597.4 1492 60.2
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 1595.5 1470 60.1
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 1592.8 1479 61.0
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1590.1 1464 59.7
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1583.5 1460 59.8
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 1578.1 1463 59.9
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1575.5 1473 58.9
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1573.1 1456 58.9
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1566.6 1451 59.6
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 1560.8 1471 60.0
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1559.7 1525 58.3
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1557.7 1457 59.9
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 1554.7 1466 59.5
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1550.4 1462 58.4
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1549.3 1463 58.3
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1547.3 1465 59.7
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 1542.7 1478 58.1
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1539.6 1474 58.1
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1534.2 1461 58.5
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 1526.5 1467 58.0
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 1522.3 1458 58.2
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 1518.1 1465 58.5
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 1509.2 1465 57.6
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1498.8 1464 57.9
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 1498.0 1460 57.7
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 0.0e+00 1494.9 1363 60.2
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1494.2 1472 58.2
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1489.6 1499 56.2
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1489.2 1495 56.6
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1481.1 1474 57.0
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1474.9 1352 59.8
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 0.0e+00 1473.8 1477 55.8
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 1472.2 1471 57.1
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 1471.1 1543 54.7
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1466.8 1476 57.5
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 0.0e+00 1465.3 1530 55.7
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 1463.7 1473 57.5
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1459.5 1478 55.7
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 0.0e+00 1449.1 1409 57.3
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 0.0e+00 1446.4 1260 62.8
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1443.7 1458 55.6
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1441.8 1479 55.4
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 1437.9 1464 55.8
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 0.0e+00 1430.6 1464 54.8
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1429.5 1489 55.5
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1427.2 1472 55.1
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1420.6 1477 55.6
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1417.5 1487 55.6
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1416.7 1470 56.3
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 0.0e+00 1412.9 1452 56.5
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 1407.5 1484 55.9
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1394.8 1509 54.9
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 0.0e+00 1369.4 1434 55.2
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1359.7 1476 53.8
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 0.0e+00 1353.6 1454 54.8
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 0.0e+00 1342.0 922 78.7
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1330.1 1477 52.9
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 0.0e+00 1328.2 1480 53.3
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 0.0e+00 1327.0 1449 53.6
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 0.0e+00 1323.5 1481 53.1
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 0.0e+00 1322.8 1457 54.7
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 0.0e+00 1320.1 1451 53.5
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 0.0e+00 1315.1 1449 53.8
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 0.0e+00 1299.6 1443 53.4
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 0.0e+00 1295.8 1444 53.7
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 0.0e+00 1293.1 1452 53.0
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 0.0e+00 1291.2 1281 59.3
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1280.4 1440 51.9
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 0.0e+00 1280.0 1440 51.9
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1277.3 1456 51.4
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 0.0e+00 1273.5 1454 51.2
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1273.1 1452 51.2
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1271.1 1459 51.1
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 0.0e+00 1261.5 1460 49.7
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 0.0e+00 1241.9 1451 49.8
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 0.0e+00 1235.3 1273 56.2
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 0.0e+00 1221.8 1404 50.4
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 0.0e+00 1207.2 1162 57.9
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1170.2 1075 60.1
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1139.0 911 66.2
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1107.0 1106 56.4
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1094.7 1321 50.9
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 4.9e-311 1071.6 1371 47.0
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 1.1e-302 1043.9 1105 55.4
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 1.0e-279 967.6 1318 46.0
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 2.0e-275 953.4 514 92.4
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 3.2e-260 902.9 1057 51.4
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 2.2e-253 880.2 1512 38.6
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 6.0e-251 872.1 1510 39.4
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 2.5e-249 866.7 1470 39.0
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 1.1e-228 798.1 1003 49.7
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 2.1e-227 793.9 836 54.4
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 1.9e-217 760.8 1538 34.2
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 4.4e-161 573.5 1831 29.2
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 2.3e-149 534.6 427 65.6
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 8.6e-141 506.1 805 41.2
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 4.0e-138 497.3 452 60.2
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 5.6e-132 476.9 587 50.8
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 1.2e-129 469.2 656 45.6
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 1.7e-128 465.3 582 51.0
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 2.9e-120 438.0 440 56.8
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 2.6e-105 388.3 1341 27.4
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 3.7e-83 314.7 212 71.7
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 3.3e-76 291.6 341 48.7
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 7.2e-71 273.9 779 32.5
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 1.6e-70 272.7 287 54.4
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 5.5e-63 247.7 1136 25.3
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 3.0e-61 241.9 393 41.0
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 8.5e-56 223.8 231 53.7
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 2.4e-42 179.1 168 60.1
Cc10_g10690 Coffea canephora HOM05D005760 ORTHO05D007113 4.7e-30 138.3 95 69.5
Hma1.2p1_0004F.1_g004040 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 7.8e-25 120.9 92 64.1
VMungo0720G0756 Vigna mungo HOM05D005760 ORTHO05D007113 3.9e-24 118.6 113 56.6
SHI09012 Sapria himalayana HOM05D005760 ORTHO05D007113 4.0e-21 108.6 94 62.8
CDE08G0048 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 1.7e-19 103.2 113 48.7
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 3.5e-17 95.5 65 64.6
ATR0003G024 Amborella trichopoda HOM05D005760 ORTHO05D007113 6.0e-17 94.7 85 54.1
Hma1.2p1_0004F.1_g004060 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 1.3e-16 93.6 102 52.9
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 3.9e-16 92.0 59 69.5
Lj4C503T2 Lonicera japonica HOM05D005760 ORTHO05D007113 5.6e-15 88.2 101 53.5
SEGI_08751 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 3.2e-10 72.4 71 53.5
SHI09014 Sapria himalayana HOM05D005760 ORTHO05D007113 2.3e-08 66.2 43 72.1
Cpa.g.sc66.41 Carica papaya HOM05D005760 ORTHO05D007113 2.5e-07 62.8 85 50.6
Cpa.g.sc66.40 Carica papaya HOM05D005760 ORTHO05D007113 2.1e-06 59.7 57 54.4


User provided reference genes

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