Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 9.9e-152 540.0 264 100.0
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 9.6e-147 523.5 264 96.2
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 1.1e-142 510.0 257 96.9
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 2.4e-129 465.7 255 88.2
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 6.9e-129 464.2 256 86.7
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 1.8e-121 439.5 258 81.8
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 5.7e-115 417.9 287 72.5
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 5.3e-105 384.8 257 71.2
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 5.3e-105 384.8 258 70.5
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 1.3e-103 380.2 256 69.1
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 4.2e-102 375.2 255 67.1
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 5.5e-102 374.8 242 71.9
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 9.4e-102 374.0 258 69.4
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 1.6e-101 373.2 270 67.8
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 2.1e-101 372.9 256 68.4
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 2.1e-101 372.9 258 69.0
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 3.6e-101 372.1 243 72.4
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 3.6e-101 372.1 241 72.2
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 8.0e-101 370.9 249 71.1
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 1.4e-100 370.2 258 66.3
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 1.4e-100 370.2 256 68.4
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 1.8e-100 369.8 259 68.3
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 5.2e-100 368.2 247 69.2
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 6.7e-100 367.9 242 71.9
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 8.8e-100 367.5 257 69.3
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 8.8e-100 367.5 242 69.8
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.5e-99 366.7 257 68.9
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 1.5e-99 366.7 243 69.5
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 2.0e-99 366.3 243 67.9
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 2.6e-99 365.9 243 67.9
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 2.6e-99 365.9 247 68.4
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 3.3e-99 365.5 242 69.0
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 4.4e-99 365.2 260 66.9
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 4.4e-99 365.2 259 67.2
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 5.7e-99 364.8 241 70.1
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 7.5e-99 364.4 251 66.9
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 9.7e-99 364.0 257 68.9
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 1.3e-98 363.6 241 69.7
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 1.3e-98 363.6 257 66.1
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 1.7e-98 363.2 241 70.1
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 2.2e-98 362.8 249 69.1
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 3.7e-98 362.1 243 69.1
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 1.4e-97 360.1 258 65.1
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 1.8e-97 359.8 243 66.7
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 3.1e-97 359.0 255 64.7
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 3.1e-97 359.0 243 67.1
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 4.1e-97 358.6 234 70.1
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 4.1e-97 358.6 257 66.9
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 4.1e-97 358.6 245 65.7
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 5.3e-97 358.2 270 64.4
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 5.3e-97 358.2 247 67.6
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 7.0e-97 357.8 255 66.3
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 1.2e-96 357.1 243 68.3
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 1.6e-96 356.7 242 69.0
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.6e-96 356.7 257 66.5
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 2.7e-96 355.9 243 68.7
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.7e-96 355.9 257 66.9
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 2.7e-96 355.9 252 65.5
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 3.5e-96 355.5 258 67.4
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 3.5e-96 355.5 243 70.0
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 5.9e-96 354.8 243 66.3
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 7.7e-96 354.4 242 66.9
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 1.0e-95 354.0 257 66.5
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 1.0e-95 354.0 240 67.5
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 1.3e-95 353.6 242 68.2
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 1.3e-95 353.6 252 65.1
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 1.7e-95 353.2 245 65.3
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 2.9e-95 352.4 243 65.4
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 2.9e-95 352.4 245 64.5
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 3.8e-95 352.1 243 65.0
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 5.0e-95 351.7 251 63.3
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 6.5e-95 351.3 251 63.3
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 8.5e-95 350.9 250 62.8
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 8.5e-95 350.9 250 62.8
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 1.1e-94 350.5 244 65.2
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 1.1e-94 350.5 248 63.7
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 1.9e-94 349.7 250 62.8
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 3.2e-94 349.0 256 64.1
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 2.1e-93 346.3 252 61.5
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 2.7e-93 345.9 257 66.1
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 2.7e-93 345.9 257 61.9
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 3.6e-93 345.5 245 65.7
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 3.6e-93 345.5 243 63.0
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 4.7e-93 345.1 241 65.6
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 8.0e-93 344.4 245 65.7
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 8.0e-93 344.4 245 66.5
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 1.0e-92 344.0 245 64.5
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 1.4e-92 343.6 241 66.0
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 1.8e-92 343.2 243 63.0
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 1.8e-92 343.2 245 65.7
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 2.3e-92 342.8 226 69.9
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 3.0e-92 342.4 245 63.7
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 4.0e-92 342.0 245 65.7
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 6.8e-92 341.3 245 65.3
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 1.2e-91 340.5 241 65.1
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 1.2e-91 340.5 243 67.9
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 2.6e-91 339.3 307 56.4
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 3.4e-91 339.0 245 65.3
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 4.4e-91 338.6 277 59.9
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 4.4e-91 338.6 241 65.1
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 5.7e-91 338.2 248 65.3
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 1.3e-90 337.0 238 66.8
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 3.7e-90 335.5 258 60.1
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 3.7e-90 335.5 258 60.1
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 3.7e-90 335.5 256 63.3
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 2.7e-88 329.3 217 70.5
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 1.8e-84 316.6 243 62.6
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 6.8e-84 314.7 230 63.0
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 2.0e-80 303.1 202 68.8
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 4.3e-78 295.4 197 67.5
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 7.3e-78 294.7 197 67.5
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 9.5e-78 294.3 178 73.0
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 2.3e-76 289.7 178 75.3
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 2.3e-76 289.7 269 52.8
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 4.9e-74 282.0 168 75.6
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 1.4e-73 280.4 247 55.1
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 9.2e-73 277.7 245 58.0
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 5.9e-72 275.0 245 54.3
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 1.7e-71 273.5 225 57.3
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 8.6e-71 271.2 240 57.1
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 1.4e-68 263.8 196 60.2
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 2.3e-68 263.1 247 52.6
Nitab4.5_0004528g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.2e-67 260.8 293 51.9
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 4.4e-67 258.8 222 53.6
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 8.6e-63 244.6 179 63.1
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 2.2e-58 229.9 250 46.8
AagrBONN_evm.TU.Sc2ySwM_362.690 Anthoceros agrestis HOM05D004915 ORTHO05D006048 1.9e-57 226.9 168 62.5
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 1.6e-56 223.8 210 51.4
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 2.3e-55 219.9 128 75.8
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 5.1e-55 218.8 227 49.3
unitig_60.g25520 Utricularia gibba HOM05D004915 ORTHO05D006048 9.5e-54 214.5 264 46.6
HanXRQChr14g0437411 Helianthus annuus HOM05D004915 ORTHO05D006048 7.1e-49 198.4 128 70.3
Gohir.A07G066000 Gossypium hirsutum HOM05D004915 ORTHO05D006048 6.0e-48 195.3 150 61.3
HanXRQChr13g0408591 Helianthus annuus HOM05D004915 ORTHO05D006048 4.3e-46 189.1 126 68.3
vmacro05688 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 4.7e-45 185.7 139 61.9
Nitab4.5_0005170g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.1e-44 184.5 110 80.0
vmacro18186 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 1.5e-43 180.6 193 49.2
CBR_g58409 Chara braunii HOM05D004915 ORTHO05D006048 2.6e-43 179.9 136 59.6
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 3.8e-42 176.0 233 40.3
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 8.4e-42 174.9 262 37.4
DCAR_026059 Daucus carota HOM05D004915 ORTHO05D006048 9.6e-38 161.4 113 64.6
FAN06G0706 Fragaria x ananassa HOM05D004915 ORTHO05D006048 7.6e-27 125.2 113 54.9
Ah.04g150570 Amaranthus hybridus HOM05D004915 ORTHO05D006048 2.4e-25 120.2 79 65.8
Nitab4.5_0005170g0060 Nicotiana tabacum HOM05D004915 ORTHO05D006048 2.1e-24 117.1 105 53.3
QL06p014899 Quercus lobata HOM05D004915 ORTHO05D006048 2.5e-22 110.2 65 69.2
ATR0642G001 Amborella trichopoda HOM05D004915 ORTHO05D006048 3.5e-16 89.7 50 84.0
DCAR_015961 Daucus carota HOM05D004915 ORTHO05D006048 1.3e-10 71.2 67 49.3
Pp3s30_306 Physcomitrium patens HOM05D004915 ORTHO05D043763 2.7e-08 63.5 128 32.0
Pp3c1_38790 Physcomitrium patens HOM05D004915 ORTHO05D315101 3.3e-06 56.6 40 62.5
Ah.04g150580 Amaranthus hybridus HOM05D004915 ORTHO05D006048 9.7e-06 55.1 69 43.5


User provided reference genes

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