Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g023680 Solanum pennellii HOM05D004752 ORTHO05D005523 2.3e-44 181.8 89 100.0
Solyc06g065180.3 Solanum lycopersicum HOM05D004752 ORTHO05D005523 6.7e-44 180.3 89 97.8
PGSC0003DMG400026069 Solanum tuberosum HOM05D004752 ORTHO05D005523 1.1e-41 172.9 97 90.7
Nitab4.5_0000303g0280 Nicotiana tabacum HOM05D004752 ORTHO05D005523 1.4e-38 162.5 98 85.7
Nitab4.5_0001082g0040 Nicotiana tabacum HOM05D004752 ORTHO05D005523 1.4e-38 162.5 98 85.7
Peaxi162Scf00268g00615 Petunia axillaris HOM05D004752 ORTHO05D005523 2.1e-37 158.7 98 82.7
PGSC0003DMG400009277 Solanum tuberosum HOM05D004752 ORTHO05D005523 1.8e-33 145.6 91 81.3
Nitab4.5_0003010g0020 Nicotiana tabacum HOM05D004752 ORTHO05D005523 3.1e-33 144.8 83 84.3
Atru.chr13.2410 Acer truncatum HOM05D004752 ORTHO05D005523 5.3e-33 144.1 96 74.0
Peaxi162Scf00391g00436 Petunia axillaris HOM05D004752 ORTHO05D005523 5.3e-33 144.1 83 81.9
AUR62022705 Chenopodium quinoa HOM05D004752 ORTHO05D005523 3.5e-32 141.4 95 73.7
Dinv41721 Davidia involucrata HOM05D004752 ORTHO05D005523 5.9e-32 140.6 100 72.0
Nitab4.5_0000365g0250 Nicotiana tabacum HOM05D004752 ORTHO05D005523 5.9e-32 140.6 84 83.3
CSS0011118 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 3.8e-31 137.9 100 71.0
CSS0018537 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 3.8e-31 137.9 100 71.0
Lalb_Chr03g0036521 Lupinus albus HOM05D004752 ORTHO05D005523 3.8e-31 137.9 96 70.8
PGR042G3757 Punica granatum HOM05D004752 ORTHO05D005523 3.8e-31 137.9 100 71.0
Cc00_g06570 Coffea canephora HOM05D004752 ORTHO05D005523 5.0e-31 137.5 100 70.0
Prupe.1G506700 Prunus persica HOM05D004752 ORTHO05D005523 6.5e-31 137.1 96 68.8
EL10Ac1g00098 Beta vulgaris HOM05D004752 ORTHO05D005523 1.5e-30 136.0 97 70.1
COL.COLO4_34528 Corchorus olitorius HOM05D004752 ORTHO05D005523 1.5e-30 136.0 100 70.0
Duzib211G0386 Durio zibethinus HOM05D004752 ORTHO05D005523 1.5e-30 136.0 100 69.0
FvH4_5g38800 Fragaria vesca HOM05D004752 ORTHO05D005523 1.5e-30 136.0 96 67.7
FAN18G0635 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.5e-30 136.0 96 67.7
Lalb_Chr19g0129031 Lupinus albus HOM05D004752 ORTHO05D005523 1.5e-30 136.0 96 68.8
TAR381G0821 Trochodendron aralioides HOM05D004752 ORTHO05D005523 1.9e-30 135.6 96 69.8
Ciclev10002954m.g Citrus clementina HOM05D004752 ORTHO05D005523 2.5e-30 135.2 96 68.8
DCAR_011527 Daucus carota HOM05D004752 ORTHO05D005523 2.5e-30 135.2 97 68.0
Potri.019G081700 Populus trichocarpa HOM05D004752 ORTHO05D005523 2.5e-30 135.2 97 70.1
RcHm_v2.0_Chr7g0240801 Rosa chinensis HOM05D004752 ORTHO05D005523 2.5e-30 135.2 96 66.7
Lalb_Chr01g0010501 Lupinus albus HOM05D004752 ORTHO05D005523 3.2e-30 134.8 96 68.8
FAN04G0063 Fragaria x ananassa HOM05D004752 ORTHO05D005523 4.2e-30 134.4 96 66.7
Potri.013G110600 Populus trichocarpa HOM05D004752 ORTHO05D005523 4.2e-30 134.4 99 71.7
FAN08G2110 Fragaria x ananassa HOM05D004752 ORTHO05D005523 5.5e-30 134.0 96 66.7
FAN13G0652 Fragaria x ananassa HOM05D004752 ORTHO05D005523 5.5e-30 134.0 96 66.7
Thecc.08G186100 Theobroma cacao HOM05D004752 ORTHO05D005523 5.5e-30 134.0 100 69.0
AUR62004632 Chenopodium quinoa HOM05D004752 ORTHO05D005523 9.4e-30 133.3 107 66.4
Migut.C01286 Erythranthe guttata HOM05D004752 ORTHO05D005523 9.4e-30 133.3 97 69.1
Gorai.009G263400 Gossypium raimondii HOM05D004752 ORTHO05D005523 9.4e-30 133.3 98 70.4
CiPaw.05G229600 Carya illinoinensis HOM05D004752 ORTHO05D005523 1.2e-29 132.9 96 66.7
TAR628G0740 Trochodendron aralioides HOM05D004752 ORTHO05D005523 1.2e-29 132.9 96 68.8
ECA247G0381 Erigeron canadensis HOM05D004752 ORTHO05D005523 1.6e-29 132.5 95 69.5
Gohir.D05G251900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.6e-29 132.5 98 69.4
Gorai.009G263300 Gossypium raimondii HOM05D004752 ORTHO05D005523 1.6e-29 132.5 98 69.4
CiPaw.06G024200 Carya illinoinensis HOM05D004752 ORTHO05D005523 2.1e-29 132.1 96 67.7
ClCG09G009960 Citrullus lanatus HOM05D004752 ORTHO05D005523 2.7e-29 131.7 98 68.4
Gohir.A05G250100 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.7e-29 131.7 98 68.4
CsaV3_2G033590 Cucumis sativus L. HOM05D004752 ORTHO05D005523 3.6e-29 131.3 98 68.4
Gohir.A05G250200 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.6e-29 131.3 98 70.4
Gohir.D05G253600 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.6e-29 131.3 97 70.1
Nn5g27610 Nelumbo nucifera HOM05D004752 ORTHO05D005523 3.6e-29 131.3 99 70.7
Gohir.D09G112900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 8.0e-29 130.2 100 64.0
Hund27095 Selenicereus undatus HOM05D004752 ORTHO05D005523 8.0e-29 130.2 98 67.3
Duzib177G0553 Durio zibethinus HOM05D004752 ORTHO05D005523 1.0e-28 129.8 100 66.0
THA.LOC104809736 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 1.0e-28 129.8 97 70.1
Aa31LG4G8590 Aethionema arabicum HOM05D004752 ORTHO05D005523 1.4e-28 129.4 97 69.1
Gorai.006G130300 Gossypium raimondii HOM05D004752 ORTHO05D005523 1.4e-28 129.4 101 63.4
HanXRQChr04g0109661 Helianthus annuus HOM05D004752 ORTHO05D005523 1.4e-28 129.4 98 68.4
Lj6g0009552 Lotus japonicus HOM05D004752 ORTHO05D005523 1.4e-28 129.4 97 69.1
Actinidia29420 Actinidia chinensis HOM05D004752 ORTHO05D005523 1.8e-28 129.0 100 69.0
MELO3C008132.2 Cucumis melo HOM05D004752 ORTHO05D005523 1.8e-28 129.0 98 67.3
Manes.02G194400 Manihot esculenta HOM05D004752 ORTHO05D005523 2.3e-28 128.6 96 67.7
Sed0006132 Sechium edule HOM05D004752 ORTHO05D005523 2.3e-28 128.6 98 66.3
Phvul.007G240400 Phaseolus vulgaris HOM05D004752 ORTHO05D005523 4.0e-28 127.9 96 67.7
C06p35220 Brassica napus HOM05D004752 ORTHO05D005523 5.2e-28 127.5 97 66.0
TPR.G20783 Trifolium pratense HOM05D004752 ORTHO05D005523 5.2e-28 127.5 97 70.1
BcaB03g14924 Brassica carinata HOM05D004752 ORTHO05D005523 6.7e-28 127.1 97 67.0
BcaC08g46649 Brassica carinata HOM05D004752 ORTHO05D005523 6.7e-28 127.1 97 67.0
A07p38200 Brassica napus HOM05D004752 ORTHO05D005523 6.7e-28 127.1 97 67.0
C06p46120 Brassica napus HOM05D004752 ORTHO05D005523 6.7e-28 127.1 97 67.0
BolC6t38628H Brassica oleracea HOM05D004752 ORTHO05D005523 6.7e-28 127.1 97 67.0
BolC6t39665H Brassica oleracea HOM05D004752 ORTHO05D005523 6.7e-28 127.1 97 67.0
CARHR064830 Cardamine hirsuta HOM05D004752 ORTHO05D005523 6.7e-28 127.1 97 68.0
Gohir.D09G112701 Gossypium hirsutum HOM05D004752 ORTHO05D005523 6.7e-28 127.1 98 63.3
Manes.18G103200 Manihot esculenta HOM05D004752 ORTHO05D005523 6.7e-28 127.1 99 64.6
Sp5g27090 Schrenkiella parvula HOM05D004752 ORTHO05D005523 6.7e-28 127.1 97 67.0
Aqoxy5G02666 Aquilegia oxysepala HOM05D004752 ORTHO05D005523 8.8e-28 126.7 102 63.7
Ca_21523_v3 Cicer arietinum L. HOM05D004752 ORTHO05D005523 8.8e-28 126.7 96 65.6
BcaC08g46647 Brassica carinata HOM05D004752 ORTHO05D005523 1.2e-27 126.3 97 67.0
BcaC08g46651 Brassica carinata HOM05D004752 ORTHO05D005523 1.2e-27 126.3 97 67.0
BcaC08g46652 Brassica carinata HOM05D004752 ORTHO05D005523 1.2e-27 126.3 97 67.0
BraA07t31385Z Brassica rapa HOM05D004752 ORTHO05D005523 1.2e-27 126.3 97 67.0
Medtr1g048960 Medicago truncatula HOM05D004752 ORTHO05D005523 1.2e-27 126.3 97 70.1
QL12p035384 Quercus lobata HOM05D004752 ORTHO05D005523 1.2e-27 126.3 96 65.6
Eucgr.F02586 Eucalyptus grandis HOM05D004752 ORTHO05D005523 1.5e-27 125.9 104 63.5
Glyma.20G068500 Glycine max HOM05D004752 ORTHO05D005523 1.5e-27 125.9 97 66.0
SalBow6G5456 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.5e-27 125.9 96 64.6
SalBow6G7070 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.5e-27 125.9 96 64.6
Lj5g0024701 Lotus japonicus HOM05D004752 ORTHO05D005523 2.0e-27 125.6 99 65.7
Os04g0432600 Oryza sativa ssp. japonica HOM05D004752 ORTHO05D005523 2.0e-27 125.6 94 69.1
Glyma.10G117300 Glycine max HOM05D004752 ORTHO05D005523 2.6e-27 125.2 97 66.0
A07p30460 Brassica napus HOM05D004752 ORTHO05D005523 3.3e-27 124.8 98 65.3
Thhalv10019369m.g Eutrema salsugineum HOM05D004752 ORTHO05D005523 3.3e-27 124.8 97 67.0
Sc23g0001310 Simmondsia chinensis HOM05D004752 ORTHO05D005523 3.3e-27 124.8 98 65.3
Carub.0002s1880 Capsella rubella HOM05D004752 ORTHO05D005523 4.4e-27 124.4 97 66.0
Zm00001eb082670 Zea mays HOM05D004752 ORTHO05D005523 4.4e-27 124.4 89 69.7
BcaC08g45743 Brassica carinata HOM05D004752 ORTHO05D005523 5.7e-27 124.0 97 64.9
MD00G1104100 Malus domestica HOM05D004752 ORTHO05D005523 5.7e-27 124.0 94 63.8
BcaB05g24700 Brassica carinata HOM05D004752 ORTHO05D005523 9.7e-27 123.2 97 64.9
BcaC03g15326 Brassica carinata HOM05D004752 ORTHO05D005523 9.7e-27 123.2 97 64.9
A02p17630 Brassica napus HOM05D004752 ORTHO05D005523 9.7e-27 123.2 97 64.9
C02p29310 Brassica napus HOM05D004752 ORTHO05D005523 9.7e-27 123.2 97 64.9
BolC2t08982H Brassica oleracea HOM05D004752 ORTHO05D005523 9.7e-27 123.2 97 64.9
BraA02t06809Z Brassica rapa HOM05D004752 ORTHO05D005523 9.7e-27 123.2 97 64.9
TWI14G1278 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 9.7e-27 123.2 98 66.3
BcaB03g15640 Brassica carinata HOM05D004752 ORTHO05D005523 1.3e-26 122.9 98 64.3
Rhsim06G0089000 Rhododendron simsii HOM05D004752 ORTHO05D005523 1.3e-26 122.9 100 64.0
Rhsim11G0057800 Rhododendron simsii HOM05D004752 ORTHO05D005523 1.3e-26 122.9 100 64.0
THA.LOC104816385 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 1.3e-26 122.9 98 65.3
vmacro00760 Vaccinium macrocarpon HOM05D004752 ORTHO05D005523 1.3e-26 122.9 100 65.0
MSTRG.1541 Avicennia marina HOM05D004752 ORTHO05D005523 1.7e-26 122.5 98 65.3
BraA07t30682Z Brassica rapa HOM05D004752 ORTHO05D005523 1.7e-26 122.5 98 64.3
TWI59G0745 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 1.7e-26 122.5 98 65.3
PSO170G1458 Papaver somniferum HOM05D004752 ORTHO05D005523 2.2e-26 122.1 98 65.3
PSO782G1292 Papaver somniferum HOM05D004752 ORTHO05D005523 2.2e-26 122.1 98 65.3
arahy.Tifrunner.gnm1.ann1.S21HCY Arachis hypogaea HOM05D004752 ORTHO05D005523 2.8e-26 121.7 98 64.3
arahy.Tifrunner.gnm1.ann1.0CG85F Arachis hypogaea HOM05D004752 ORTHO05D005523 3.7e-26 121.3 98 64.3
Lsat_1_v5_gn_1_12481 Lactuca sativa HOM05D004752 ORTHO05D005523 3.7e-26 121.3 98 66.3
PGR102G0675 Punica granatum HOM05D004752 ORTHO05D005523 3.7e-26 121.3 102 65.7
SalBow6G5891 Salvia bowleyana HOM05D004752 ORTHO05D005523 4.8e-26 120.9 94 67.0
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 6.3e-26 120.6 97 61.9
Lj4E474T0 Lonicera japonica HOM05D004752 ORTHO05D005523 8.3e-26 120.2 103 63.1
MBI17_g21481_MAGBIO Magnolia biondii HOM05D004752 ORTHO05D005523 1.1e-25 119.8 78 73.1
FAN02G3062 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.4e-25 119.4 81 71.6
Sc01g0001860 Simmondsia chinensis HOM05D004752 ORTHO05D005523 1.4e-25 119.4 97 61.9
Actinidia03509 Actinidia chinensis HOM05D004752 ORTHO05D005523 5.3e-25 117.5 100 65.0
MD15G1358900 Malus domestica HOM05D004752 ORTHO05D005523 5.3e-25 117.5 96 59.4
Duzib177G0197 Durio zibethinus HOM05D004752 ORTHO05D005523 7.0e-25 117.1 100 60.0
FAN18G0607 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.6e-24 115.9 82 68.3
FAN18G1874 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.6e-24 115.9 82 68.3
FAN18G2073 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.6e-24 115.9 82 68.3
MSTRG.25459 Avicennia marina HOM05D004752 ORTHO05D005523 2.7e-24 115.2 99 59.6
CANSAT80G1056 Cannabis sativa HOM05D004752 ORTHO05D005523 3.5e-24 114.8 102 62.7
VMungo0720G2181 Vigna mungo HOM05D004752 ORTHO05D005523 1.0e-23 113.2 74 74.3
AL2G31650 Arabidopsis lyrata HOM05D004752 ORTHO05D005523 1.3e-23 112.8 98 62.2
Sabra19G0093300 Salix brachista HOM05D004752 ORTHO05D005523 1.3e-23 112.8 76 73.7
SalBow6G0286 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.3e-23 112.8 74 74.3
ATR0071G025 Amborella trichopoda HOM05D004752 ORTHO05D005523 1.7e-23 112.5 76 72.4
Rhsim11G0056800 Rhododendron simsii HOM05D004752 ORTHO05D005523 2.9e-23 111.7 86 65.1
AT1G72020 Arabidopsis thaliana HOM05D004752 ORTHO05D005523 6.5e-23 110.5 98 60.2
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 2.5e-22 108.6 78 69.2
Zm00001eb243470 Zea mays HOM05D004752 ORTHO05D005523 2.5e-22 108.6 83 63.9
unitig_0.g2130 Utricularia gibba HOM05D004752 ORTHO05D005523 1.2e-21 106.3 95 58.9
SEGI_26065 Sequoiadendron giganteum HOM05D004752 ORTHO05D005523 4.7e-21 104.4 75 66.7
Gohir.A09G115700 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.0e-20 103.2 63 76.2
GSVIVG01012767001 Vitis vinifera HOM05D004752 ORTHO05D005523 1.0e-20 103.2 107 54.2
CDE04G0573 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 1.2e-19 99.8 97 56.7
CDE07G1886 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 1.2e-19 99.8 97 56.7
unitig_747.g21474 Utricularia gibba HOM05D004752 ORTHO05D005523 5.7e-19 97.4 80 65.0
HPP92_000079 Vanilla planifolia HOM05D004752 ORTHO05D005523 5.7e-19 97.4 59 76.3
SHI09031 Sapria himalayana HOM05D004752 ORTHO05D005523 1.6e-16 89.4 87 54.0
Pp3c19_1780 Physcomitrium patens HOM05D004752 ORTHO05D005523 2.0e-11 72.4 69 49.3
AagrBONN_evm.TU.Sc2ySwM_117.1418 Anthoceros agrestis HOM05D004752 ORTHO05D005523 1.7e-10 69.3 88 46.6
Mapoly0001s0236 Marchantia polymorpha HOM05D004752 ORTHO05D005523 6.3e-10 67.4 95 46.3
CBR_g3658 Chara braunii HOM05D004752 ORTHO05D005523 1.1e-09 66.6 79 46.8


User provided reference genes

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