Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 5.6e-59 230.7 116 100.0
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 1.4e-36 156.4 93 87.1
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 3.0e-36 155.2 94 84.0
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 1.5e-19 99.8 64 70.3
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 1.5e-19 99.8 64 70.3
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 2.8e-18 95.5 64 67.2
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 5.3e-17 91.3 64 65.6
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 9.1e-17 90.5 64 65.6
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 3.5e-16 88.6 68 60.3
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 1.0e-15 87.0 85 56.5
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 1.3e-15 86.7 91 54.9
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 2.2e-15 85.9 77 55.8
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 2.2e-15 85.9 68 60.3
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 6.5e-15 84.3 60 65.0
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 8.5e-15 84.0 87 52.9
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 1.1e-14 83.6 62 58.1
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.5e-14 83.2 70 61.4
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 4.2e-14 81.6 61 65.6
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 4.2e-14 81.6 61 65.6
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 5.5e-14 81.3 71 57.7
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 5.5e-14 81.3 78 56.4
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 9.4e-14 80.5 61 63.9
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 9.4e-14 80.5 62 59.7
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.2e-13 80.1 69 60.9
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 1.2e-13 80.1 61 59.0
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 1.6e-13 79.7 62 58.1
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 2.1e-13 79.3 70 57.1
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 2.7e-13 79.0 60 56.7
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 8.0e-13 77.4 83 51.8
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 1.0e-12 77.0 73 53.4
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 1.0e-12 77.0 64 53.1
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 1.0e-12 77.0 69 50.7
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 1.0e-12 77.0 70 54.3
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 1.4e-12 76.6 69 52.2
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 1.8e-12 76.3 69 55.1
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.0e-12 75.5 73 54.8
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 4.0e-12 75.1 85 45.9
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 6.8e-12 74.3 77 49.4
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.4e-11 72.0 75 50.7
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 3.4e-11 72.0 61 55.7
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 4.4e-11 71.6 67 56.7
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 4.4e-11 71.6 90 43.3
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 5.7e-11 71.2 85 42.4
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 9.8e-11 70.5 63 54.0
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 1.3e-10 70.1 63 55.6
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 1.3e-10 70.1 60 56.7
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 3.7e-10 68.6 63 55.6
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 3.7e-10 68.6 62 51.6
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 4.8e-10 68.2 91 46.2
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 4.8e-10 68.2 65 52.3
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 8.3e-10 67.4 57 56.1
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 1.4e-09 66.6 62 54.8
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 1.4e-09 66.6 60 48.3
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 1.4e-09 66.6 90 44.4
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 2.4e-09 65.9 80 43.8
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 2.4e-09 65.9 80 43.8
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 3.1e-09 65.5 70 45.7
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 3.1e-09 65.5 70 45.7
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 4.1e-09 65.1 72 48.6
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 4.1e-09 65.1 72 48.6
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 5.4e-09 64.7 70 44.3
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 7.0e-09 64.3 63 54.0
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 1.2e-08 63.5 82 39.0
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 1.6e-08 63.2 79 41.8
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 1.6e-08 63.2 64 51.6
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 3.5e-08 62.0 63 50.8
VMungo1383G2992 Vigna mungo HOM05D001291 ORTHO05D004804 3.5e-08 62.0 92 44.6
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 4.5e-08 61.6 98 39.8
Lalb_Chr13g0295561 Lupinus albus HOM05D004137 ORTHO05D004804 5.9e-08 61.2 93 39.8
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 7.7e-08 60.8 116 33.6
BcaNung02428 Brassica carinata HOM05D004137 ORTHO05D004804 7.7e-08 60.8 63 50.8
Peaxi162Scf00078g00515 Petunia axillaris HOM05D004137 ORTHO05D004804 7.7e-08 60.8 39 71.8
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 1.0e-07 60.5 63 47.6
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 1.0e-07 60.5 79 39.2
vmacro20990 Vaccinium macrocarpon HOM05D004137 ORTHO05D004804 1.0e-07 60.5 61 50.8
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 1.3e-07 60.1 91 44.0
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 1.3e-07 60.1 63 47.6
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 1.3e-07 60.1 70 42.9
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 1.3e-07 60.1 70 42.9
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 1.7e-07 59.7 63 50.8
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 1.7e-07 59.7 74 44.6
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 2.3e-07 59.3 63 47.6
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 2.9e-07 58.9 74 41.9
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 2.9e-07 58.9 68 45.6
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 2.9e-07 58.9 68 45.6
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 2.9e-07 58.9 100 41.0
Glyma.08G125200 Glycine max HOM05D004137 ORTHO05D004804 3.8e-07 58.5 86 41.9
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 5.0e-07 58.2 63 49.2
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 5.0e-07 58.2 70 42.9
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 5.0e-07 58.2 74 41.9
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 5.0e-07 58.2 88 42.0
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 6.6e-07 57.8 80 38.8
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 6.6e-07 57.8 74 41.9
Phvul.002G247400 Phaseolus vulgaris HOM05D004137 ORTHO05D004804 6.6e-07 57.8 98 39.8
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 1.1e-06 57.0 80 37.5
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 1.5e-06 56.6 68 44.1
BraA03t14731Z Brassica rapa HOM05D004137 ORTHO05D004804 1.5e-06 56.6 68 44.1
Potri.013G057766 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.5e-06 56.6 81 43.2
A03p56610 Brassica napus HOM05D004137 ORTHO05D004804 2.5e-06 55.8 68 42.6
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 2.5e-06 55.8 63 47.6
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 2.5e-06 55.8 63 47.6
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 2.5e-06 55.8 71 45.1
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 2.5e-06 55.8 70 41.4
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 2.5e-06 55.8 86 41.9
Cfa016445 Carpinus fangiana HOM05D001721 ORTHO05D001804 3.3e-06 55.5 55 49.1
Haze_19423 Corylus avellana HOM05D004137 ORTHO05D004804 3.3e-06 55.5 55 49.1
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 3.3e-06 55.5 87 39.1
BcaC04g20079 Brassica carinata HOM05D004137 ORTHO05D004804 4.2e-06 55.1 63 47.6
C09p48110 Brassica napus HOM05D004137 ORTHO05D004804 4.2e-06 55.1 63 47.6
BolC9t57661H Brassica oleracea HOM05D004137 ORTHO05D004804 4.2e-06 55.1 63 47.6
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 5.5e-06 54.7 81 35.8
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 5.5e-06 54.7 81 35.8
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 5.5e-06 54.7 81 35.8
A01p17580 Brassica napus HOM05D004137 ORTHO05D004804 7.2e-06 54.3 63 46.0
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 7.2e-06 54.3 92 39.1
Cc06_g23020 Coffea canephora HOM05D004137 ORTHO05D004804 7.2e-06 54.3 69 44.9


User provided reference genes

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