Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 5.0e-94 347.8 184 100.0
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 1.9e-88 329.3 184 94.6
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 8.3e-73 277.3 184 77.2
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 1.0e-70 270.4 179 77.7
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 5.8e-66 254.6 182 75.8
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.1e-64 250.4 182 75.3
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 2.4e-64 249.2 182 73.6
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 1.6e-63 246.5 182 73.6
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 4.6e-63 245.0 182 72.0
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 9.6e-61 237.3 162 75.3
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.0e-58 229.6 147 80.3
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 4.2e-56 221.9 155 71.0
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 7.1e-56 221.1 155 72.9
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 2.1e-55 219.5 150 72.0
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 3.5e-55 218.8 155 70.3
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 1.0e-54 217.2 150 72.7
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 1.3e-54 216.9 157 68.2
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 1.3e-54 216.9 150 72.7
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 2.3e-54 216.1 140 76.4
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 3.0e-54 215.7 140 76.4
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 3.0e-54 215.7 170 62.9
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 3.0e-54 215.7 147 74.1
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 3.9e-54 215.3 162 67.9
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 6.6e-54 214.5 142 76.1
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 8.7e-54 214.2 153 68.6
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 1.1e-53 213.8 154 70.1
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 1.5e-53 213.4 143 74.8
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 1.5e-53 213.4 155 68.4
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 3.3e-53 212.2 142 74.6
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 3.3e-53 212.2 142 74.6
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 3.3e-53 212.2 142 74.6
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 3.3e-53 212.2 155 67.7
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 4.3e-53 211.8 147 70.1
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 5.6e-53 211.5 155 65.8
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 5.6e-53 211.5 155 65.8
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 9.6e-53 210.7 154 68.8
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 1.3e-52 210.3 159 67.3
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 1.3e-52 210.3 142 71.8
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 1.6e-52 209.9 167 64.1
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 2.8e-52 209.1 159 66.7
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 3.6e-52 208.8 135 76.3
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 6.2e-52 208.0 153 68.6
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 8.1e-52 207.6 137 74.5
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 1.1e-51 207.2 136 73.5
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 1.4e-51 206.8 147 70.7
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 4.0e-51 205.3 153 68.0
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 4.0e-51 205.3 154 64.3
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 1.2e-50 203.8 147 68.0
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.2e-50 203.8 148 68.2
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 1.2e-50 203.8 148 68.2
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 1.5e-50 203.4 142 71.1
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.5e-50 203.4 154 67.5
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 2.6e-50 202.6 155 64.5
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 3.4e-50 202.2 158 69.0
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 3.4e-50 202.2 154 66.2
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 5.8e-50 201.4 152 67.1
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 7.6e-50 201.1 153 66.0
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 9.9e-50 200.7 153 66.0
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 1.3e-49 200.3 138 70.3
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 1.3e-49 200.3 138 72.5
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 1.3e-49 200.3 149 68.5
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 1.7e-49 199.9 140 70.0
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 1.7e-49 199.9 175 61.1
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 2.9e-49 199.1 140 72.9
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 2.9e-49 199.1 136 71.3
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 3.8e-49 198.7 150 64.0
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 6.4e-49 198.0 142 69.7
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 4.2e-48 195.3 171 61.4
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 5.4e-48 194.9 138 68.8
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 7.1e-48 194.5 154 63.6
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 7.1e-48 194.5 154 63.6
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 7.1e-48 194.5 157 61.1
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 2.7e-47 192.6 138 68.8
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 2.7e-47 192.6 154 62.3
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 7.9e-47 191.0 135 71.9
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 1.3e-46 190.3 153 62.1
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 1.3e-46 190.3 182 61.5
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 3.0e-46 189.1 151 64.9
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 5.1e-46 188.3 154 62.3
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 1.9e-45 186.4 157 61.8
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 1.9e-45 186.4 136 66.9
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 3.3e-45 185.7 142 64.8
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 5.6e-45 184.9 130 73.8
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 5.6e-45 184.9 132 71.2
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 5.6e-45 184.9 154 63.0
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 9.6e-45 184.1 155 62.6
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 9.6e-45 184.1 121 73.6
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 1.6e-44 183.3 150 62.7
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 2.8e-44 182.6 139 66.9
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 2.8e-44 182.6 139 67.6
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 3.7e-44 182.2 164 57.9
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 1.4e-43 180.3 139 66.9
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 1.4e-43 180.3 139 66.9
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 1.8e-43 179.9 139 66.9
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 4.0e-43 178.7 131 67.9
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 4.0e-43 178.7 150 61.3
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 4.0e-43 178.7 150 61.3
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 4.0e-43 178.7 128 68.0
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 5.3e-43 178.3 150 61.3
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 6.9e-43 177.9 134 67.2
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 9.0e-43 177.6 131 67.9
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 1.5e-42 176.8 131 67.2
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 1.0e-41 174.1 161 59.0
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 1.3e-41 173.7 176 52.8
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 1.7e-41 173.3 131 64.9
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 3.5e-39 165.6 130 63.8
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 4.6e-39 165.2 121 66.1
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 1.0e-38 164.1 105 79.0
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 3.9e-38 162.2 97 78.4
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 1.5e-37 160.2 121 66.9
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 1.9e-37 159.8 121 66.9
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 8.2e-36 154.5 124 64.5
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 9.0e-35 151.0 101 73.3
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 4.5e-34 148.7 146 54.1
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 6.5e-33 144.8 109 67.0
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 1.1e-32 144.1 123 52.8
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 1.9e-32 143.3 118 59.3
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 5.5e-32 141.7 105 66.7
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 5.5e-32 141.7 127 57.5
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 1.8e-30 136.7 94 70.2
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 5.1e-30 135.2 110 61.8
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 5.1e-30 135.2 95 71.6
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 2.9e-25 119.4 84 69.0
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 7.2e-24 114.8 72 73.6
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 3.0e-22 109.4 96 64.6
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 3.1e-19 99.4 129 45.0
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 5.3e-19 98.6 129 41.9
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 5.3e-19 98.6 135 46.7
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 5.5e-16 88.6 96 50.0
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 1.2e-15 87.4 122 40.2
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 5.7e-13 78.6 54 64.8
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 1.3e-12 77.4 48 75.0
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 8.2e-12 74.7 50 62.0
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 9.1e-11 71.2 47 70.2
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 6.1e-07 58.5 54 55.6
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 1.0e-06 57.8 48 56.2
Prupe.5G038700 Prunus persica HOM05D005569 ORTHO05D007052 1.0e-06 57.8 51 54.9


User provided reference genes

Program Settings