Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 1.2e-264 916.0 464 100.0
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 6.4e-263 910.2 464 99.4
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 4.9e-255 884.0 464 97.0
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.6e-200 702.2 474 80.6
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 5.5e-198 694.5 464 80.4
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 1.1e-182 643.7 468 74.4
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 4.0e-180 635.2 410 81.5
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 8.9e-180 634.0 474 75.1
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.2e-179 633.6 471 73.0
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 1.7e-178 629.8 436 74.5
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 1.1e-177 627.1 455 73.6
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 1.1e-177 627.1 421 77.4
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 1.8e-177 626.3 402 80.1
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 3.2e-177 625.5 370 84.6
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 7.0e-177 624.4 377 83.3
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 4.6e-176 621.7 397 80.1
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 4.6e-176 621.7 430 77.2
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 8.6e-175 617.5 473 70.6
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 8.6e-175 617.5 422 77.3
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 1.5e-174 616.7 368 83.7
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.9e-174 616.3 377 81.7
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 5.6e-174 614.8 366 85.0
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 1.2e-173 613.6 365 84.9
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 1.2e-173 613.6 385 82.1
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.6e-173 613.2 365 83.3
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 3.6e-173 612.1 385 81.6
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 4.7e-173 611.7 368 83.7
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 8.0e-173 610.9 368 82.9
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 1.0e-172 610.5 377 82.5
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 1.0e-172 610.5 397 78.1
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 1.4e-172 610.1 417 76.0
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 1.8e-172 609.8 368 82.6
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 1.8e-172 609.8 366 84.4
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 2.3e-172 609.4 372 82.8
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 2.3e-172 609.4 346 87.9
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 3.1e-172 609.0 363 83.5
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 5.2e-172 608.2 340 89.4
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 6.8e-172 607.8 358 84.4
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.5e-171 606.7 431 74.2
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 3.4e-171 605.5 365 83.0
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 4.4e-171 605.1 412 75.2
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 4.4e-171 605.1 460 69.3
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 5.8e-171 604.7 396 78.5
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 5.8e-171 604.7 378 81.5
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 5.8e-171 604.7 378 81.5
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 7.5e-171 604.4 402 78.4
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.7e-170 602.1 378 81.0
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 4.9e-170 601.7 379 80.2
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 6.4e-170 601.3 351 86.0
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 8.3e-170 600.9 378 81.0
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 8.3e-170 600.9 378 81.0
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 1.4e-169 600.1 395 78.2
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 1.9e-169 599.7 436 72.2
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 1.9e-169 599.7 365 82.2
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 2.4e-169 599.4 357 83.2
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 3.2e-169 599.0 380 79.7
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 4.1e-169 598.6 385 79.7
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 7.0e-169 597.8 376 80.3
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 7.0e-169 597.8 376 80.3
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 9.2e-169 597.4 372 80.6
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 1.2e-168 597.0 354 83.6
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 1.6e-168 596.7 389 77.6
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 2.0e-168 596.3 314 96.5
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 2.0e-168 596.3 365 81.9
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 2.0e-168 596.3 343 87.2
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 2.7e-168 595.9 417 74.3
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 7.8e-168 594.3 362 82.6
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 1.0e-167 594.0 391 78.0
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 1.3e-167 593.6 364 81.3
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 3.9e-167 592.0 389 77.4
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 3.9e-167 592.0 342 85.4
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 5.0e-167 591.7 383 78.6
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 6.6e-167 591.3 358 83.8
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 1.5e-166 590.1 381 78.5
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 1.5e-166 590.1 386 78.2
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 1.5e-166 590.1 357 82.6
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 1.9e-166 589.7 341 86.8
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 3.3e-166 589.0 343 85.7
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 3.3e-166 589.0 357 82.4
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 3.6e-165 585.5 350 83.4
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 1.1e-164 583.9 419 72.3
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 1.4e-164 583.6 365 80.0
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 5.2e-164 581.6 362 81.8
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 2.6e-163 579.3 375 77.9
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 4.4e-163 578.6 416 72.8
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 1.3e-162 577.0 416 72.6
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 1.7e-162 576.6 358 81.0
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 8.3e-162 574.3 490 64.3
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 1.1e-161 573.9 343 83.7
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 6.0e-160 568.2 352 79.3
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 6.0e-160 568.2 362 79.6
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 5.1e-159 565.1 338 82.8
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 6.6e-159 564.7 353 81.6
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 2.5e-158 562.8 373 76.7
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 3.1e-156 555.8 377 75.1
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 7.1e-153 544.7 368 75.5
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.3e-151 539.7 362 76.0
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 7.3e-150 534.6 333 82.3
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 2.8e-149 532.7 335 79.4
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 6.2e-149 531.6 431 67.7
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 1.5e-147 526.9 314 83.1
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 2.0e-147 526.6 408 68.1
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 2.6e-147 526.2 298 86.9
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 7.6e-147 524.6 368 74.2
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 3.9e-143 512.3 364 70.6
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 6.6e-143 511.5 353 72.5
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 1.1e-140 504.2 342 72.2
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 4.0e-140 502.3 343 72.3
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 6.4e-138 495.0 301 81.1
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 2.7e-136 489.6 328 78.0
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 8.7e-135 484.6 339 73.2
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 3.3e-134 482.6 393 63.9
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 3.1e-124 449.5 318 75.2
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 1.2e-123 447.6 270 83.3
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 6.0e-120 435.3 296 76.4
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 8.7e-119 431.4 271 80.1
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 4.3e-118 429.1 251 84.1
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 3.8e-114 416.0 250 82.4
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 1.1e-97 361.3 205 89.3
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 5.9e-83 312.4 181 84.0
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 5.0e-82 309.3 197 78.7
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 7.0e-76 288.9 330 47.0
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 7.7e-75 285.4 181 79.0
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 2.2e-74 283.9 335 46.0
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 1.4e-63 248.1 354 46.6
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 8.9e-63 245.4 143 84.6
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 1.4e-60 238.0 351 37.6
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.1e-60 236.5 132 87.1
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 1.9e-52 211.1 121 81.8
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 3.0e-50 203.8 371 38.3
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 6.8e-47 192.6 109 87.2
CAN.G308.6 Capsicum annuum HOM05D004748 ORTHO05D005825 7.3e-41 172.6 127 74.0
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 5.2e-39 166.4 109 78.0
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 3.6e-32 143.7 103 69.9
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 5.8e-30 136.3 80 85.0
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 7.6e-30 136.0 101 66.3
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 9.9e-30 135.6 129 58.1
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 4.6e-27 126.7 79 79.7
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 1.1e-25 122.1 84 71.4
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 1.9e-25 121.3 109 61.5
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 2.1e-24 117.9 125 48.8
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.1e-24 117.9 63 90.5
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 3.6e-24 117.1 76 75.0
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 3.6e-24 117.1 76 75.0
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 3.6e-24 117.1 76 75.0
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 2.0e-22 111.3 76 71.1
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 2.0e-22 111.3 76 71.1
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 7.6e-22 109.4 76 69.7
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 3.5e-19 100.5 64 79.7
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 2.6e-14 84.3 54 81.5
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 1.4e-12 78.6 44 86.4
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 1.2e-11 75.5 83 50.6
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 8.7e-10 69.3 36 94.4
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 1.3e-08 65.5 35 88.6
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 6.2e-08 63.2 36 80.6
SEGI_11704 Sequoiadendron giganteum HOM05D004748 ORTHO05D006250 8.2e-08 62.8 37 75.7
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 1.1e-07 62.4 67 49.3
HanXRQChr12g0383231 Helianthus annuus HOM05D002835 ORTHO05D003008 4.0e-07 60.5 63 47.6
arahy.Tifrunner.gnm1.ann1.SQ6FML Arachis hypogaea HOM05D000121 ORTHO05D031608 3.4e-06 57.4 34 73.5


User provided reference genes

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