Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g022680 Solanum pennellii HOM05D007092 ORTHO05D008947 1.3e-193 679.5 333 100.0
PGSC0003DMG400026517 Solanum tuberosum HOM05D007092 ORTHO05D008947 1.6e-183 646.0 330 95.8
Solyc06g063230.3 Solanum lycopersicum HOM05D007092 ORTHO05D008947 2.3e-182 642.1 327 97.2
Nitab4.5_0008628g0030 Nicotiana tabacum HOM05D007092 ORTHO05D008947 2.4e-155 552.4 343 81.3
Nitab4.5_0002661g0010 Nicotiana tabacum HOM05D007092 ORTHO05D008947 8.1e-151 537.3 345 80.0
Peaxi162Scf00207g01537 Petunia axillaris HOM05D007092 ORTHO05D008947 1.3e-127 460.3 357 68.9
Dinv37796 Davidia involucrata HOM05D007092 ORTHO05D008947 1.1e-110 404.1 260 70.0
Eucgr.F04011 Eucalyptus grandis HOM05D007092 ORTHO05D008947 1.9e-107 393.3 261 69.7
Nn2g12583 Nelumbo nucifera HOM05D007092 ORTHO05D008947 1.2e-106 390.6 260 68.8
Oeu049655.1 Olea europaea HOM05D007092 ORTHO05D008947 2.1e-106 389.8 275 66.9
Cc04_g00380 Coffea canephora HOM05D007092 ORTHO05D008947 3.9e-105 385.6 284 65.5
HanXRQChr10g0311491 Helianthus annuus HOM05D007092 ORTHO05D008947 6.7e-105 384.8 285 63.5
Lsat_1_v5_gn_5_137421 Lactuca sativa HOM05D007092 ORTHO05D008947 3.3e-104 382.5 259 66.0
PGR102G2093 Punica granatum HOM05D007092 ORTHO05D008947 5.7e-104 381.7 265 66.8
arahy.Tifrunner.gnm1.ann1.U4SUAB Arachis hypogaea HOM05D007092 ORTHO05D008947 9.7e-104 380.9 254 66.5
Phvul.008G255700 Phaseolus vulgaris HOM05D007092 ORTHO05D008947 1.7e-103 380.2 260 66.9
VMungo0647G0167 Vigna mungo HOM05D007092 ORTHO05D008947 2.8e-103 379.4 260 66.2
CSS0038887 Camellia sinensis var. sinensis HOM05D007092 ORTHO05D008947 4.8e-103 378.6 283 65.0
Hma1.2p1_1104F.1_g257360 Hydrangea macrophylla HOM05D007092 ORTHO05D008947 8.2e-103 377.9 267 65.5
Medtr4g006030 Medicago truncatula HOM05D007092 ORTHO05D008947 8.2e-103 377.9 264 65.5
RcHm_v2.0_Chr2g0150121 Rosa chinensis HOM05D007092 ORTHO05D008947 8.2e-103 377.9 284 62.3
ECA234G1665 Erigeron canadensis HOM05D007092 ORTHO05D008947 1.1e-102 377.5 269 63.6
arahy.Tifrunner.gnm1.ann1.2I6Q5Y Arachis hypogaea HOM05D007092 ORTHO05D008947 1.4e-102 377.1 254 66.1
QL05p083231 Quercus lobata HOM05D007092 ORTHO05D008947 2.4e-102 376.3 262 66.0
GSVIVG01016136001 Vitis vinifera HOM05D007092 ORTHO05D008947 3.1e-102 375.9 272 64.0
Lalb_Chr04g0264731 Lupinus albus HOM05D007092 ORTHO05D008947 5.3e-102 375.2 273 63.0
Thecc.06G015800 Theobroma cacao HOM05D007092 ORTHO05D008947 7.0e-102 374.8 256 66.0
MD09G1158700 Malus domestica HOM05D007092 ORTHO05D008947 1.2e-101 374.0 296 58.8
TPR.G38753 Trifolium pratense HOM05D007092 ORTHO05D008947 4.5e-101 372.1 299 58.5
Sc12g0010950 Simmondsia chinensis HOM05D007092 ORTHO05D008947 7.7e-101 371.3 272 64.0
Ciclev10026125m.g Citrus clementina HOM05D007092 ORTHO05D008947 1.0e-100 370.9 295 61.0
TAR383G0306 Trochodendron aralioides HOM05D007092 ORTHO05D008947 1.7e-100 370.2 295 60.0
Actinidia21869 Actinidia chinensis HOM05D007092 ORTHO05D008947 5.0e-100 368.6 285 62.1
Ca_20954_v3 Cicer arietinum L. HOM05D007092 ORTHO05D008947 8.5e-100 367.9 257 64.6
Carub.0002s1986 Capsella rubella HOM05D007092 ORTHO05D008947 1.1e-99 367.5 249 66.7
FvH4_6g37290 Fragaria vesca HOM05D007092 ORTHO05D008947 1.4e-99 367.1 281 60.9
Glyma.07G003900 Glycine max HOM05D007092 ORTHO05D008947 4.2e-99 365.5 256 64.5
Manes.01G181400 Manihot esculenta HOM05D007092 ORTHO05D008947 5.5e-99 365.2 305 57.7
AL2G32840 Arabidopsis lyrata HOM05D007092 ORTHO05D008947 9.4e-99 364.4 249 66.3
CANSAT01G0482 Cannabis sativa HOM05D007092 ORTHO05D008947 9.4e-99 364.4 279 60.2
Lj3g0013116 Lotus japonicus HOM05D007092 ORTHO05D008947 1.6e-98 363.6 270 61.9
AT1G73090 Arabidopsis thaliana HOM05D007092 ORTHO05D008947 2.1e-98 363.2 271 62.0
Atru.chr1.2779 Acer truncatum HOM05D007092 ORTHO05D008947 8.0e-98 361.3 253 64.8
Aa31LG4G3360 Aethionema arabicum HOM05D007092 ORTHO05D008947 3.9e-97 359.0 249 63.9
CARHR066060 Cardamine hirsuta HOM05D007092 ORTHO05D008947 5.2e-97 358.6 249 65.1
PSO063G1240 Papaver somniferum HOM05D007092 ORTHO05D008947 6.7e-97 358.2 274 62.0
Prupe.3G167100 Prunus persica HOM05D007092 ORTHO05D008947 1.5e-96 357.1 260 63.1
CsaV3_7G033820 Cucumis sativus L. HOM05D007092 ORTHO05D008947 4.4e-96 355.5 255 63.5
SalBow6G0042 Salvia bowleyana HOM05D007092 ORTHO05D008947 4.4e-96 355.5 262 61.5
Thhalv10018923m.g Eutrema salsugineum HOM05D007092 ORTHO05D008947 5.7e-96 355.1 249 65.5
Sp5g28050 Schrenkiella parvula HOM05D007092 ORTHO05D008947 7.4e-96 354.8 250 65.2
A02p18440 Brassica napus HOM05D007092 ORTHO05D008947 2.8e-95 352.8 250 65.2
BraA02t06883Z Brassica rapa HOM05D007092 ORTHO05D008947 2.8e-95 352.8 250 65.2
Aqoxy7G03199 Aquilegia oxysepala HOM05D007092 ORTHO05D008947 3.7e-95 352.4 272 59.9
Migut.I01177 Erythranthe guttata HOM05D007092 ORTHO05D008947 3.7e-95 352.4 267 62.5
BolC2t09103H Brassica oleracea HOM05D007092 ORTHO05D008947 3.1e-94 349.4 250 64.8
C02p30520 Brassica napus HOM05D007092 ORTHO05D008947 5.3e-94 348.6 251 64.9
Duzib160G0445 Durio zibethinus HOM05D007092 ORTHO05D008947 7.0e-94 348.2 255 63.5
FAN02G1258 Fragaria x ananassa HOM05D007092 ORTHO05D008947 1.2e-93 347.4 319 54.2
EL10Ac7g18225 Beta vulgaris HOM05D007092 ORTHO05D008947 2.0e-93 346.7 282 59.9
ATR0580G293 Amborella trichopoda HOM05D007092 ORTHO05D008947 2.2e-92 343.2 270 60.0
ClCG09G001510 Citrullus lanatus HOM05D007092 ORTHO05D008947 8.5e-92 341.3 270 60.4
Gorai.011G008000 Gossypium raimondii HOM05D007092 ORTHO05D008947 1.2e-90 337.4 236 66.5
MBI14_g30703_MAGBIO Magnolia biondii HOM05D007092 ORTHO05D008947 1.2e-90 337.4 348 50.9
Gohir.D10G007300 Gossypium hirsutum HOM05D007092 ORTHO05D008947 1.6e-90 337.0 232 67.2
AUR62025584 Chenopodium quinoa HOM05D007092 ORTHO05D008947 2.1e-90 336.7 288 56.6
Gohir.A10G007400 Gossypium hirsutum HOM05D007092 ORTHO05D008947 2.1e-90 336.7 234 68.4
Haze_15817 Corylus avellana HOM05D007092 ORTHO05D008947 4.7e-90 335.5 316 54.7
COL.COLO4_22872 Corchorus olitorius HOM05D007092 ORTHO05D008947 4.4e-88 328.9 252 61.1
Potri.010G250100 Populus trichocarpa HOM05D007092 ORTHO05D008947 7.5e-88 328.2 263 60.5
Sabra10G0194500 Salix brachista HOM05D007092 ORTHO05D008947 8.3e-87 324.7 263 60.5
Sed0004999 Sechium edule HOM05D007092 ORTHO05D008947 1.8e-86 323.6 232 63.8
Hund18612 Selenicereus undatus HOM05D007092 ORTHO05D008947 1.6e-85 320.5 271 59.0
HPP92_017449 Vanilla planifolia HOM05D007092 ORTHO05D008947 2.2e-84 316.6 276 54.0
THA.LOC104823333 Tarenaya hassleriana HOM05D007092 ORTHO05D008947 2.5e-83 313.2 246 59.8
MELO3C024294.2 Cucumis melo HOM05D007092 ORTHO05D008947 2.0e-80 303.5 251 58.6
unitig_748.g7475 Utricularia gibba HOM05D007092 ORTHO05D008947 1.4e-78 297.4 256 57.0
Lj6C21G9 Lonicera japonica HOM05D007092 ORTHO05D008947 8.6e-76 288.1 279 53.0
arahy.Tifrunner.gnm1.ann1.65RD4S Arachis hypogaea HOM05D007092 ORTHO05D008947 4.2e-75 285.8 205 62.4
AUR62001368 Chenopodium quinoa HOM05D007092 ORTHO05D008947 2.8e-74 283.1 279 51.3
SGA_v2.0_scaffold122G33289 Striga asiatica HOM05D002895 ORTHO05D003286 8.0e-74 281.6 215 61.9
CDE07G2035 Ceratophyllum demersum HOM05D007092 ORTHO05D008947 5.9e-69 265.4 293 48.5
Lj6C3G1 Lonicera japonica HOM05D000076 ORTHO05D001279 9.2e-62 241.5 269 47.2
Hund18613 Selenicereus undatus HOM05D007092 ORTHO05D008947 1.1e-54 218.0 180 57.8
Psat7g263560 Pisum sativum HOM05D007092 ORTHO05D008947 3.5e-53 213.0 154 65.6
Mapoly0073s0046 Marchantia polymorpha HOM05D007092 ORTHO05D008947 3.9e-52 209.5 252 43.7
AagrBONN_evm.TU.Sc2ySwM_344.2112 Anthoceros agrestis HOM05D007092 ORTHO05D008947 6.6e-52 208.8 253 41.5
Cfa021192 Carpinus fangiana HOM05D007092 ORTHO05D008947 2.3e-49 200.3 132 65.9
Pp3c13_10570 Physcomitrium patens HOM05D007092 ORTHO05D008947 5.4e-46 189.1 255 38.8
SMO230G0107 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 1.2e-42 177.9 253 38.3
FAN09G2007 Fragaria x ananassa HOM05D007092 ORTHO05D008947 6.8e-41 172.2 148 60.1
arahy.Tifrunner.gnm1.ann1.NXC5E0 Arachis hypogaea HOM05D007092 ORTHO05D008947 1.6e-37 161.0 106 64.2
C02p30540 Brassica napus HOM05D007092 ORTHO05D008947 1.7e-36 157.5 107 65.4
arahy.Tifrunner.gnm1.ann1.DEI7NY Arachis hypogaea HOM05D007092 ORTHO05D008947 3.8e-31 139.8 83 69.9
SMO336G0036 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 3.0e-28 130.2 285 30.9
Glyma.08G222700 Glycine max HOM05D007092 ORTHO05D008947 2.5e-27 127.1 83 66.3
RcHm_v2.0_Chr1g0381181 Rosa chinensis HOM05D007092 ORTHO05D008947 3.3e-27 126.7 134 53.7
SEGI_20536 Sequoiadendron giganteum HOM05D007092 ORTHO05D008947 3.4e-24 116.7 84 61.9
Lj6A3T47 Lonicera japonica HOM05D007092 ORTHO05D008947 1.8e-20 104.4 61 67.2
arahy.Tifrunner.gnm1.ann1.QYJ7WZ Arachis hypogaea HOM05D007092 ORTHO05D008947 1.4e-17 94.7 72 65.3
arahy.Tifrunner.gnm1.ann1.TPQB3Q Arachis hypogaea HOM05D007092 ORTHO05D008947 1.4e-17 94.7 72 65.3
arahy.Tifrunner.gnm1.ann1.BLVE7G Arachis hypogaea HOM05D007092 ORTHO05D008947 4.0e-17 93.2 52 73.1
arahy.Tifrunner.gnm1.ann1.LQFB73 Arachis hypogaea HOM05D007092 ORTHO05D008947 4.0e-17 93.2 52 73.1
Cpa.g.sc1009.2 Carica papaya HOM05D007092 ORTHO05D008947 6.9e-17 92.4 64 70.3
BcaC07g40307 Brassica carinata HOM05D007092 ORTHO05D008947 3.0e-12 77.0 60 55.0
arahy.Tifrunner.gnm1.ann1.KBSP04 Arachis hypogaea HOM05D002221 ORTHO05D002626 1.1e-09 68.6 46 58.7
arahy.Tifrunner.gnm1.ann1.R6H1XR Arachis hypogaea HOM05D002221 ORTHO05D002626 1.1e-09 68.6 46 58.7
BcaB05g22026 Brassica carinata HOM05D007092 ORTHO05D008947 1.4e-09 68.2 65 46.2
Actinidia21637 Actinidia chinensis HOM05D007092 ORTHO05D008947 5.3e-09 66.2 72 50.0
Actinidia38794 Actinidia chinensis HOM05D007092 ORTHO05D008947 1.0e-07 62.0 52 55.8
arahy.Tifrunner.gnm1.ann1.AT2CXE Arachis hypogaea HOM05D007092 ORTHO05D008947 2.9e-07 60.5 43 55.8
SEGI_38624 Sequoiadendron giganteum HOM05D007092 ORTHO05D050975 3.8e-07 60.1 46 54.3
Cpa.g.sc3948.1 Carica papaya HOM05D007092 ORTHO05D008947 1.1e-06 58.5 32 71.9
Hund18614 Selenicereus undatus HOM05D007092 ORTHO05D008947 9.3e-06 55.5 47 59.6


User provided reference genes

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