Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g021330 Solanum pennellii HOM05D007159 ORTHO05D009068 3.6e-112 408.3 214 100.0
Solyc06g061130.4 Solanum lycopersicum HOM05D007159 ORTHO05D009068 1.3e-106 389.8 214 96.7
PGSC0003DMG402002094 Solanum tuberosum HOM05D007159 ORTHO05D009068 1.8e-106 389.4 214 93.9
Nitab4.5_0000256g0440 Nicotiana tabacum HOM05D007159 ORTHO05D009068 1.2e-83 313.5 215 78.6
Nitab4.5_0006066g0020 Nicotiana tabacum HOM05D007159 ORTHO05D009068 2.1e-59 233.0 133 88.7
QL04p022349 Quercus lobata HOM05D007159 ORTHO05D009068 3.0e-58 229.2 182 64.8
Potri.003G190101 Populus trichocarpa HOM05D007159 ORTHO05D009068 5.2e-58 228.4 170 68.2
Manes.11G009800 Manihot esculenta HOM05D007159 ORTHO05D009068 1.2e-57 227.3 207 61.8
SalBow5G2583 Salvia bowleyana HOM05D007159 ORTHO05D009068 3.4e-57 225.7 220 60.0
Ciclev10002366m.g Citrus clementina HOM05D007159 ORTHO05D009068 5.7e-57 224.9 166 69.3
CiPaw.13G018000 Carya illinoinensis HOM05D007159 ORTHO05D009068 7.5e-57 224.6 167 67.7
arahy.Tifrunner.gnm1.ann1.XLH660 Arachis hypogaea HOM05D007159 ORTHO05D009068 1.3e-56 223.8 202 59.9
COL.COLO4_32863 Corchorus olitorius HOM05D007159 ORTHO05D009068 3.7e-56 222.2 138 80.4
Migut.B01174 Erythranthe guttata HOM05D007159 ORTHO05D009068 4.8e-56 221.9 182 65.9
Duzib128G1689 Durio zibethinus HOM05D007159 ORTHO05D009068 3.1e-55 219.2 167 68.9
Thecc.10G133500 Theobroma cacao HOM05D007159 ORTHO05D009068 5.4e-55 218.4 167 68.3
Gohir.A10G191800 Gossypium hirsutum HOM05D007159 ORTHO05D009068 1.2e-54 217.2 168 68.5
GSVIVG01004028001 Vitis vinifera HOM05D007159 ORTHO05D009068 1.6e-54 216.9 183 61.2
Lj3g0023531 Lotus japonicus HOM05D007159 ORTHO05D009068 2.0e-54 216.5 167 64.7
MD02G1270600 Malus domestica HOM05D007159 ORTHO05D009068 2.7e-54 216.1 212 57.5
TWI63G1065 Tripterygium wilfordii HOM05D007159 ORTHO05D009068 2.7e-54 216.1 173 61.8
Medtr3g011770 Medicago truncatula HOM05D007159 ORTHO05D009068 7.7e-54 214.5 165 63.6
Cc00_g21840 Coffea canephora HOM05D007159 ORTHO05D009068 1.3e-53 213.8 224 55.4
Phvul.005G013300 Phaseolus vulgaris HOM05D007159 ORTHO05D009068 1.7e-53 213.4 167 64.7
RcHm_v2.0_Chr3g0462781 Rosa chinensis HOM05D007159 ORTHO05D009068 2.2e-53 213.0 182 62.1
SGA_v2.0_scaffold141G35535 Striga asiatica HOM05D007159 ORTHO05D009068 3.8e-53 212.2 155 67.7
Eucgr.G03186 Eucalyptus grandis HOM05D007159 ORTHO05D009068 6.5e-53 211.5 169 66.3
Gorai.011G223700 Gossypium raimondii HOM05D007159 ORTHO05D009068 1.1e-52 210.7 168 66.7
GSVIVG01012409001 Vitis vinifera HOM05D007159 ORTHO05D009068 1.5e-52 210.3 145 71.0
MSTRG.20491 Avicennia marina HOM05D007159 ORTHO05D009068 1.9e-52 209.9 171 66.1
FvH4_6g11251 Fragaria vesca HOM05D007159 ORTHO05D009068 3.2e-52 209.1 172 64.5
FAN14G5227 Fragaria x ananassa HOM05D007159 ORTHO05D009068 3.2e-52 209.1 172 64.5
TPR.G30403 Trifolium pratense HOM05D007159 ORTHO05D009068 4.2e-52 208.8 207 55.1
GSVIVG01004020001 Vitis vinifera HOM05D007159 ORTHO05D009068 4.2e-52 208.8 145 70.3
FAN02G0787 Fragaria x ananassa HOM05D007159 ORTHO05D009068 5.5e-52 208.4 170 64.1
GSVIVG01012445001 Vitis vinifera HOM05D007159 ORTHO05D009068 5.5e-52 208.4 145 70.3
VMungo1080G1031 Vigna mungo HOM05D007159 ORTHO05D009068 9.4e-52 207.6 155 65.2
FAN14G2984 Fragaria x ananassa HOM05D007159 ORTHO05D009068 1.6e-51 206.8 172 64.0
Glyma.04G126100 Glycine max HOM05D007159 ORTHO05D009068 2.7e-51 206.1 170 61.8
Lalb_Chr18g0048161 Lupinus albus HOM05D007159 ORTHO05D009068 4.7e-51 205.3 170 61.2
Nn2g14588 Nelumbo nucifera HOM05D007159 ORTHO05D009068 6.1e-51 204.9 225 52.4
THA.LOC104824199 Tarenaya hassleriana HOM05D007159 ORTHO05D009068 8.0e-51 204.5 155 66.5
TAR623G0509 Trochodendron aralioides HOM05D007159 ORTHO05D009068 6.8e-50 201.4 200 55.5
Psat5g224840 Pisum sativum HOM05D007159 ORTHO05D009068 1.2e-49 200.7 131 72.5
Gohir.D10G199566 Gossypium hirsutum HOM05D007159 ORTHO05D009068 1.5e-49 200.3 125 78.4
ATR0598G156 Amborella trichopoda HOM05D007159 ORTHO05D009068 2.0e-49 199.9 139 70.5
Hund06845 Selenicereus undatus HOM05D007159 ORTHO05D009068 3.4e-49 199.1 231 50.6
Sp4g21050 Schrenkiella parvula HOM05D007159 ORTHO05D009068 1.7e-48 196.8 171 59.6
Carub.0004s2069 Capsella rubella HOM05D007159 ORTHO05D009068 6.3e-48 194.9 139 68.3
Rhsim08G0052600 Rhododendron simsii HOM05D007159 ORTHO05D009068 8.3e-48 194.5 190 56.3
BcaNung04831 Brassica carinata HOM05D007159 ORTHO05D009068 1.1e-47 194.1 127 74.0
C03p25530 Brassica napus HOM05D007159 ORTHO05D009068 1.4e-47 193.7 153 64.1
BraA03t11390Z Brassica rapa HOM05D007159 ORTHO05D009068 1.8e-47 193.4 141 68.1
AUR62035525 Chenopodium quinoa HOM05D007159 ORTHO05D009068 1.8e-47 193.4 171 60.2
AL4G35990 Arabidopsis lyrata HOM05D007159 ORTHO05D009068 2.4e-47 193.0 165 58.8
A03p21540 Brassica napus HOM05D007159 ORTHO05D009068 2.4e-47 193.0 141 67.4
BolC3t14940H Brassica oleracea HOM05D007159 ORTHO05D009068 3.1e-47 192.6 141 68.1
AT2G38695 Arabidopsis thaliana HOM05D007159 ORTHO05D009068 4.1e-47 192.2 174 58.0
PGR031G3393 Punica granatum HOM05D007159 ORTHO05D009068 5.4e-47 191.8 165 61.8
Thhalv10017229m.g Eutrema salsugineum HOM05D007159 ORTHO05D009068 9.2e-47 191.0 150 63.3
PSO339G3610 Papaver somniferum HOM05D007159 ORTHO05D009068 1.6e-46 190.3 227 51.1
CARHR133370 Cardamine hirsuta HOM05D007159 ORTHO05D009068 3.5e-46 189.1 215 52.6
Aqoxy1G00016 Aquilegia oxysepala HOM05D007159 ORTHO05D009068 4.5e-46 188.7 126 72.2
Zm00001eb314250 Zea mays HOM05D007159 ORTHO05D009068 5.9e-46 188.3 138 67.4
Aa31sc689G20 Aethionema arabicum HOM05D007159 ORTHO05D009068 7.7e-46 188.0 168 57.7
HPP92_004369 Vanilla planifolia HOM05D007159 ORTHO05D009068 6.6e-45 184.9 187 54.5
Dinv23933 Davidia involucrata HOM05D007159 ORTHO05D009068 1.9e-44 183.3 179 59.2
Aa31sc26G60 Aethionema arabicum HOM05D007159 ORTHO05D009068 9.5e-44 181.0 155 60.6
Actinidia35758 Actinidia chinensis HOM05D007159 ORTHO05D009068 3.6e-43 179.1 180 55.6
Lsat_1_v5_gn_7_31321 Lactuca sativa HOM05D007159 ORTHO05D009068 1.0e-42 177.6 117 70.1
SEGI_36712 Sequoiadendron giganteum HOM05D007159 ORTHO05D009068 1.4e-42 177.2 136 65.4
EL10Ac4g08838 Beta vulgaris HOM05D007159 ORTHO05D009068 3.0e-42 176.0 113 77.0
ClCG11G012910 Citrullus lanatus HOM05D007159 ORTHO05D009068 3.4e-41 172.6 120 67.5
CsaV3_5G029340 Cucumis sativus L. HOM05D007159 ORTHO05D009068 5.7e-41 171.8 198 50.5
arahy.Tifrunner.gnm1.ann1.T46YUH Arachis hypogaea HOM05D007159 ORTHO05D009068 1.4e-39 167.2 146 61.6
HanXRQChr15g0480981 Helianthus annuus HOM05D007159 ORTHO05D009068 3.2e-39 166.0 172 54.1
Peaxi162Scf00615g00514 Petunia axillaris HOM05D007159 ORTHO05D009068 3.2e-39 166.0 92 89.1
Mapoly0102s0032 Marchantia polymorpha HOM05D007159 ORTHO05D009068 4.1e-39 165.6 193 49.7
ECA236G3649 Erigeron canadensis HOM05D007159 ORTHO05D009068 3.5e-38 162.5 158 53.8
AagrBONN_evm.TU.Sc2ySwM_344.1718 Anthoceros agrestis HOM05D007159 ORTHO05D009068 4.6e-38 162.2 138 58.7
SMO137G0134 Selaginella moellendorffii HOM05D007159 ORTHO05D009068 7.3e-36 154.8 122 59.8
Ah.06g191300 Amaranthus hybridus HOM05D007159 ORTHO05D009068 1.0e-34 151.0 190 47.9
Sc09g0004690 Simmondsia chinensis HOM05D007159 ORTHO05D009068 2.3e-34 149.8 93 79.6
DCAR_001925 Daucus carota HOM05D007159 ORTHO05D009068 3.1e-34 149.4 98 71.4
CBR_g8263 Chara braunii HOM05D007159 ORTHO05D009068 4.4e-33 145.6 121 60.3
Actinidia39400 Actinidia chinensis HOM05D007159 ORTHO05D009068 2.2e-32 143.3 90 75.6
FAN05G1155 Fragaria x ananassa HOM05D007159 ORTHO05D009068 5.4e-31 138.7 186 48.4
Prupe.2G049700 Prunus persica HOM05D007159 ORTHO05D009068 3.5e-30 136.0 141 51.1
GSVIVG01012423001 Vitis vinifera HOM05D007159 ORTHO05D009068 7.8e-30 134.8 83 80.7
AUR62041642 Chenopodium quinoa HOM05D007159 ORTHO05D009068 3.0e-29 132.9 124 58.1
GSVIVG01012347001 Vitis vinifera HOM05D007159 ORTHO05D009068 3.0e-29 132.9 94 71.3
Oeu058665.1 Olea europaea HOM05D007159 ORTHO05D009068 9.5e-28 127.9 71 83.1
Aa31sc19G60 Aethionema arabicum HOM05D007159 ORTHO05D009068 2.3e-26 123.2 83 73.5
MELO3C034053.2 Cucumis melo HOM05D007159 ORTHO05D009068 4.0e-26 122.5 101 62.4
Sed0014969 Sechium edule HOM05D007159 ORTHO05D009068 1.2e-25 120.9 127 49.6
GSVIVG01012437001 Vitis vinifera HOM05D007159 ORTHO05D009068 2.2e-24 116.7 145 46.9
unitig_749.g13795 Utricularia gibba HOM05D007159 ORTHO05D009068 1.3e-21 107.5 80 66.2
QL04p022306 Quercus lobata HOM05D007159 ORTHO05D009068 1.7e-21 107.1 92 60.9
FAN09G0838 Fragaria x ananassa HOM05D007159 ORTHO05D009068 1.9e-20 103.6 186 39.2
Atru.chr12.1193 Acer truncatum HOM05D007159 ORTHO05D009068 2.6e-17 93.2 49 91.8
PRCOL_00002415 Prasinoderma coloniale HOM05D007159 ORTHO05D009068 1.9e-15 87.0 129 41.9
CANSAT78G1490 Cannabis sativa HOM05D007159 ORTHO05D009068 9.2e-15 84.7 128 43.8
Glyma.06G312500 Glycine max HOM05D007159 ORTHO05D009068 1.2e-14 84.3 64 64.1
Sed0016161 Sechium edule HOM05D007159 ORTHO05D009068 6.6e-13 78.6 70 58.6
Haze_02958 Corylus avellana HOM05D007159 ORTHO05D009068 1.5e-12 77.4 40 90.0
MCO13G186 Micromonas commoda HOM05D007159 ORTHO05D009068 3.6e-11 72.8 118 41.5
Nitab4.5_0006066g0060 Nicotiana tabacum HOM05D007159 ORTHO05D009068 1.2e-09 67.8 67 53.7
Os04g0600100 Oryza sativa ssp. japonica HOM05D009116 ORTHO05D011299 2.6e-09 66.6 112 33.9
Ciclev10012634m.g Citrus clementina HOM05D009116 ORTHO05D011299 1.7e-08 63.9 161 30.4
CDE02G3635 Ceratophyllum demersum HOM05D009116 ORTHO05D011299 4.9e-08 62.4 114 36.0
Mapoly0065s0044 Marchantia polymorpha HOM05D009116 ORTHO05D011299 6.4e-08 62.0 114 36.0
Migut.F00112 Erythranthe guttata HOM05D009116 ORTHO05D011299 1.4e-07 60.8 168 26.8
Nitab4.5_0003012g0090 Nicotiana tabacum HOM05D009116 ORTHO05D011299 1.4e-07 60.8 165 30.9
MSTRG.26944 Avicennia marina HOM05D009116 ORTHO05D011299 1.9e-07 60.5 118 32.2
PGSC0003DMG400027028 Solanum tuberosum HOM05D009116 ORTHO05D011299 1.9e-07 60.5 181 27.6
unitig_52.g17699 Utricularia gibba HOM05D009116 ORTHO05D011299 1.9e-07 60.5 117 32.5
Solyc06g072930.4 Solanum lycopersicum HOM05D009116 ORTHO05D011299 4.2e-07 59.3 166 28.9
Sopen06g029290 Solanum pennellii HOM05D009116 ORTHO05D011299 4.2e-07 59.3 167 28.7
QL04p022221 Quercus lobata HOM05D000002 ORTHO05D000001 5.4e-07 58.9 102 46.1
Nitab4.5_0000115g0230 Nicotiana tabacum HOM05D009116 ORTHO05D011299 9.3e-07 58.2 172 28.5
Rhsim03G0219300 Rhododendron simsii HOM05D009116 ORTHO05D011299 9.3e-07 58.2 165 27.9
EL10Ac1g00288 Beta vulgaris HOM05D009116 ORTHO05D011299 1.2e-06 57.8 117 32.5
CAN.G65.136 Capsicum annuum HOM05D009116 ORTHO05D011299 1.2e-06 57.8 158 29.1
Eucgr.H00677 Eucalyptus grandis HOM05D009116 ORTHO05D011299 1.2e-06 57.8 118 31.4
Pp3c5_14710 Physcomitrium patens HOM05D009116 ORTHO05D011299 1.6e-06 57.4 117 30.8
Oeu038114.2 Olea europaea HOM05D002675 ORTHO05D003322 2.1e-06 57.0 161 27.3
PGR031G3920 Punica granatum HOM05D009116 ORTHO05D011299 2.1e-06 57.0 117 31.6
COL.COLO4_34141 Corchorus olitorius HOM05D009116 ORTHO05D011299 2.7e-06 56.6 207 25.6
Hund27206 Selenicereus undatus HOM05D009116 ORTHO05D011299 4.6e-06 55.8 146 28.8


User provided reference genes

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