Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g020970 Solanum pennellii HOM05D002756 ORTHO05D002896 2.3e-172 609.0 348 100.0
Solyc06g060820.2 Solanum lycopersicum HOM05D002756 ORTHO05D002896 5.1e-164 581.3 353 93.8
PGSC0003DMG400024151 Solanum tuberosum HOM05D002756 ORTHO05D002896 7.7e-144 514.2 365 84.4
CAN.G62.18 Capsicum annuum HOM05D002756 ORTHO05D002896 8.0e-101 371.3 404 63.6
Nitab4.5_0002206g0010 Nicotiana tabacum HOM05D002756 ORTHO05D002896 4.9e-74 282.3 391 55.2
Nitab4.5_0000618g0140 Nicotiana tabacum HOM05D002756 ORTHO05D002896 4.0e-68 262.7 407 48.6
Peaxi162Scf00190g00123 Petunia axillaris HOM05D002756 ORTHO05D002896 3.5e-64 249.6 417 49.2
Nitab4.5_0002601g0020 Nicotiana tabacum HOM05D002756 ORTHO05D002896 2.5e-33 147.1 516 33.5
Nitab4.5_0007283g0010 Nicotiana tabacum HOM05D002756 ORTHO05D002896 4.6e-32 142.9 518 33.0
Peaxi162Scf00346g00062 Petunia axillaris HOM05D002756 ORTHO05D002896 2.3e-31 140.6 540 31.1
Nitab4.5_0000506g0050 Nicotiana tabacum HOM05D002756 ORTHO05D002896 3.9e-31 139.8 172 56.4
Migut.A01149 Erythranthe guttata HOM05D002756 ORTHO05D002896 1.8e-28 131.0 384 36.5
CAN.G1178.4 Capsicum annuum HOM05D002756 ORTHO05D002896 2.4e-28 130.6 504 31.0
Solyc08g078290.1 Solanum lycopersicum HOM05D002756 ORTHO05D002896 3.4e-27 126.7 469 33.3
Sopen08g026790 Solanum pennellii HOM05D002756 ORTHO05D002896 5.9e-27 125.9 472 33.1
PGSC0003DMG400026237 Solanum tuberosum HOM05D002756 ORTHO05D002896 7.7e-27 125.6 479 31.7
GSVIVG01005822001 Vitis vinifera HOM05D002756 ORTHO05D002896 6.5e-26 122.5 382 34.6
Hma1.2p1_1196F.1_g266030 Hydrangea macrophylla HOM05D002756 ORTHO05D002896 7.2e-25 119.0 493 31.8
Hma1.2p1_1335F.1_g276370 Hydrangea macrophylla HOM05D002756 ORTHO05D002896 7.2e-25 119.0 493 31.8
Gohir.D12G217500 Gossypium hirsutum HOM05D002756 ORTHO05D002896 3.6e-24 116.7 423 32.4
CANSAT21G1520 Cannabis sativa HOM05D002756 ORTHO05D002896 5.2e-23 112.8 429 31.0
Cc08_g12030 Coffea canephora HOM05D002756 ORTHO05D002896 6.7e-23 112.5 508 32.7
Gohir.D03G166200 Gossypium hirsutum HOM05D002756 ORTHO05D002896 6.7e-23 112.5 361 34.3
Gorai.008G233100 Gossypium raimondii HOM05D002756 ORTHO05D002896 8.8e-23 112.1 423 31.2
Gorai.003G175700 Gossypium raimondii HOM05D002756 ORTHO05D002896 1.1e-22 111.7 361 33.8
Duzib068G0659 Durio zibethinus HOM05D002756 ORTHO05D002896 1.5e-22 111.3 519 31.6
Dinv21670 Davidia involucrata HOM05D002756 ORTHO05D002896 5.7e-22 109.4 162 49.4
TWI81G0105 Tripterygium wilfordii HOM05D002756 ORTHO05D002896 5.7e-22 109.4 486 29.0
Gorai.003G175800 Gossypium raimondii HOM05D002756 ORTHO05D002896 4.8e-21 106.3 358 33.5
Gohir.A12G214900 Gossypium hirsutum HOM05D002756 ORTHO05D002896 6.3e-21 105.9 423 31.4
CSS0004447 Camellia sinensis var. sinensis HOM05D002756 ORTHO05D002896 2.4e-20 104.0 154 48.1
Dinv39178 Davidia involucrata HOM05D002756 ORTHO05D002896 2.4e-20 104.0 480 28.5
Ciclev10019703m.g Citrus clementina HOM05D002756 ORTHO05D002896 4.1e-20 103.2 163 47.9
vmacro00014 Vaccinium macrocarpon HOM05D002756 ORTHO05D002896 4.1e-20 103.2 479 28.4
QL12p010923 Quercus lobata HOM05D002756 ORTHO05D002896 1.2e-19 101.7 158 48.7
QL12p011144 Quercus lobata HOM05D002756 ORTHO05D002896 1.2e-19 101.7 158 48.7
Haze_07935 Corylus avellana HOM05D002756 ORTHO05D002896 1.6e-19 101.3 461 29.9
CSS0042834 Camellia sinensis var. sinensis HOM05D002756 ORTHO05D002896 2.6e-19 100.5 156 48.7
Atru.chr9.1260 Acer truncatum HOM05D002756 ORTHO05D002896 5.9e-19 99.4 157 46.5
HanXRQChr17g0549241 Helianthus annuus HOM05D002756 ORTHO05D002896 5.9e-19 99.4 452 31.6
Cfa012698 Carpinus fangiana HOM05D002756 ORTHO05D002896 1.0e-18 98.6 163 46.0
Thecc.03G246800 Theobroma cacao HOM05D002756 ORTHO05D002896 1.3e-18 98.2 516 29.7
CiPaw.11G082800 Carya illinoinensis HOM05D002756 ORTHO05D002896 1.7e-18 97.8 153 47.7
Actinidia02163 Actinidia chinensis HOM05D002756 ORTHO05D002896 8.5e-18 95.5 148 47.3
Rhsim11G0050900 Rhododendron simsii HOM05D002756 ORTHO05D002896 3.2e-17 93.6 159 45.9
TAR629G0742 Trochodendron aralioides HOM05D002756 ORTHO05D002896 3.2e-17 93.6 154 44.2
Lalb_Chr09g0329931 Lupinus albus HOM05D002756 ORTHO05D002896 4.2e-17 93.2 476 30.0
Oeu017053.1 Olea europaea HOM05D002756 ORTHO05D002896 4.2e-17 93.2 523 28.1
RcHm_v2.0_Chr7g0204301 Rosa chinensis HOM05D002756 ORTHO05D002896 5.5e-17 92.8 183 42.6
Nn6g33847 Nelumbo nucifera HOM05D002756 ORTHO05D002896 7.2e-17 92.4 184 40.8
Medtr4g100530 Medicago truncatula HOM05D002756 ORTHO05D002896 9.4e-17 92.0 451 28.2
TPR.G37630 Trifolium pratense HOM05D002756 ORTHO05D002896 9.4e-17 92.0 435 29.2
MELO3C013922.2 Cucumis melo HOM05D002756 ORTHO05D002896 1.6e-16 91.3 482 28.0
FAN13G0091 Fragaria x ananassa HOM05D002756 ORTHO05D002896 2.1e-16 90.9 164 43.3
MD04G1061300 Malus domestica HOM05D002756 ORTHO05D002896 2.1e-16 90.9 180 38.9
Potri.003G079900 Populus trichocarpa HOM05D002756 ORTHO05D002896 2.1e-16 90.9 156 42.9
CiPaw.12G049400 Carya illinoinensis HOM05D002756 ORTHO05D002896 2.7e-16 90.5 154 44.8
Eucgr.E00399 Eucalyptus grandis HOM05D002756 ORTHO05D002896 2.7e-16 90.5 185 39.5
Sabra01G0124600 Salix brachista HOM05D002756 ORTHO05D002896 2.7e-16 90.5 159 44.7
TAR375G0301 Trochodendron aralioides HOM05D002756 ORTHO05D002896 2.7e-16 90.5 152 42.8
PSO732G0525 Papaver somniferum HOM05D002756 ORTHO05D002896 3.6e-16 90.1 164 43.9
TAR629G2869 Trochodendron aralioides HOM05D002756 ORTHO05D002896 4.7e-16 89.7 536 28.5
Actinidia33498 Actinidia chinensis HOM05D002756 ORTHO05D002896 1.0e-15 88.6 363 31.7
Duzib205G1850 Durio zibethinus HOM05D002756 ORTHO05D002896 1.0e-15 88.6 517 28.4
Lalb_Chr16g0386561 Lupinus albus HOM05D002756 ORTHO05D002896 1.0e-15 88.6 166 41.0
Manes.02G041900 Manihot esculenta HOM05D002756 ORTHO05D002896 1.4e-15 88.2 167 43.1
SGA_v2.0_scaffold199G41225 Striga asiatica HOM05D002756 ORTHO05D002896 1.4e-15 88.2 452 27.2
Duzib084G0904 Durio zibethinus HOM05D002756 ORTHO05D002896 1.8e-15 87.8 501 29.3
FAN04G0448 Fragaria x ananassa HOM05D002756 ORTHO05D002896 1.8e-15 87.8 167 41.9
FAN08G2407 Fragaria x ananassa HOM05D002756 ORTHO05D002896 1.8e-15 87.8 167 41.9
FvH4_5g19610 Fragaria vesca HOM05D002756 ORTHO05D002896 2.3e-15 87.4 167 41.9
Nn6g33844 Nelumbo nucifera HOM05D002756 ORTHO05D002896 2.3e-15 87.4 528 28.0
FAN18G1828 Fragaria x ananassa HOM05D002756 ORTHO05D002896 3.0e-15 87.0 167 41.9
Lj4g0006676 Lotus japonicus HOM05D002756 ORTHO05D002896 3.0e-15 87.0 153 41.8
HanXRQChr06g0164481 Helianthus annuus HOM05D002756 ORTHO05D002896 4.0e-15 86.7 369 29.3
Sabra03G0049800 Salix brachista HOM05D002756 ORTHO05D002896 4.0e-15 86.7 533 28.3
Glyma.17G144800 Glycine max HOM05D002756 ORTHO05D002896 6.7e-15 85.9 156 43.6
Psat4g073480 Pisum sativum HOM05D002756 ORTHO05D002896 6.7e-15 85.9 428 29.4
PSO675G5676 Papaver somniferum HOM05D002756 ORTHO05D002896 8.8e-15 85.5 165 42.4
Aqoxy3G02766 Aquilegia oxysepala HOM05D002756 ORTHO05D002896 2.0e-14 84.3 152 43.4
Sc07g0009180 Simmondsia chinensis HOM05D002756 ORTHO05D002896 2.0e-14 84.3 155 43.2
Ah.12g054420 Amaranthus hybridus HOM05D002756 ORTHO05D002896 2.6e-14 84.0 156 40.4
Potri.001G155000 Populus trichocarpa HOM05D002756 ORTHO05D002896 4.4e-14 83.2 543 27.4
Phvul.003G223300 Phaseolus vulgaris HOM05D002756 ORTHO05D002896 7.5e-14 82.4 152 43.4
VMungo0251G0835 Vigna mungo HOM05D002756 ORTHO05D002896 9.7e-14 82.0 152 43.4
DCAR_008518 Daucus carota HOM05D002756 ORTHO05D002896 1.7e-13 81.3 436 29.8
EL10Ac5g12331 Beta vulgaris HOM05D002756 ORTHO05D002896 2.2e-13 80.9 155 38.7
Lj8C270T8 Lonicera japonica HOM05D002756 ORTHO05D002896 2.2e-13 80.9 511 29.5
Dinv44072 Davidia involucrata HOM05D001866 ORTHO05D002896 4.8e-13 79.7 160 42.5
PGR042G1682 Punica granatum HOM05D002756 ORTHO05D002896 1.4e-12 78.2 506 28.1
ClCG10G002500 Citrullus lanatus HOM05D002756 ORTHO05D002896 5.3e-12 76.3 529 25.9
CANSAT78G0750 Cannabis sativa HOM05D002756 ORTHO05D002896 2.7e-11 73.9 152 36.2
Cpa.g.sc101.27 Carica papaya HOM05D002756 ORTHO05D002896 4.5e-11 73.2 197 31.5
SHI07780 Sapria himalayana HOM05D002756 ORTHO05D002896 7.7e-11 72.4 348 29.9
Cpa.g.sc89.63 Carica papaya HOM05D002756 ORTHO05D002896 2.2e-10 70.9 375 31.2
vmacro22653 Vaccinium macrocarpon HOM05D002756 ORTHO05D002896 2.2e-10 70.9 121 43.8
HPP92_025695 Vanilla planifolia HOM05D002756 ORTHO05D002896 2.2e-10 70.9 393 30.0
Ciclev10024461m.g Citrus clementina HOM05D001866 ORTHO05D001915 3.8e-10 70.1 174 33.3
Lalb_Chr05g0221081 Lupinus albus HOM05D002756 ORTHO05D002896 5.0e-10 69.7 546 26.2
Duzib138G1759 Durio zibethinus HOM05D002756 ORTHO05D002896 6.5e-10 69.3 174 32.8
Thhalv10024963m.g Eutrema salsugineum HOM05D002756 ORTHO05D002896 1.1e-09 68.6 152 35.5
THA.LOC104807911 Tarenaya hassleriana HOM05D002756 ORTHO05D002896 1.1e-09 68.6 500 25.6
BraA07t30146Z Brassica rapa HOM05D002756 ORTHO05D002896 1.9e-09 67.8 160 32.5
BcaC08g45049 Brassica carinata HOM05D002756 ORTHO05D002896 2.5e-09 67.4 174 33.3
C06p26670 Brassica napus HOM05D002756 ORTHO05D002896 2.5e-09 67.4 174 33.3
Gohir.D11G080900 Gossypium hirsutum HOM05D002756 ORTHO05D002896 3.2e-09 67.0 201 29.4
Gohir.A03G006140 Gossypium hirsutum HOM05D002756 ORTHO05D002896 5.5e-09 66.2 289 30.8
Sed0011081 Sechium edule HOM05D002756 ORTHO05D002896 5.5e-09 66.2 161 34.8
A07p25060 Brassica napus HOM05D002756 ORTHO05D002896 7.2e-09 65.9 177 31.6
Haze_02809 Corylus avellana HOM05D002756 ORTHO05D002896 7.2e-09 65.9 180 30.6
Aa31LG10G14490 Aethionema arabicum HOM05D002756 ORTHO05D002896 9.4e-09 65.5 172 30.2
BolC6t37829H Brassica oleracea HOM05D002756 ORTHO05D002896 9.4e-09 65.5 180 31.7
QL04p030920 Quercus lobata HOM05D002756 ORTHO05D002896 9.4e-09 65.5 193 31.6
Sed0017596 Sechium edule HOM05D002756 ORTHO05D002896 9.4e-09 65.5 526 26.4
Aa31LG2G12970 Aethionema arabicum HOM05D002756 ORTHO05D002896 1.2e-08 65.1 142 43.7
BcaC02g10154 Brassica carinata HOM05D002756 ORTHO05D002896 1.2e-08 65.1 148 35.8
C04p32180 Brassica napus HOM05D002756 ORTHO05D002896 1.2e-08 65.1 148 35.8
BolC4t24769H Brassica oleracea HOM05D002756 ORTHO05D002896 1.2e-08 65.1 148 35.8
Carub.0007s2697 Capsella rubella HOM05D002756 ORTHO05D002896 1.2e-08 65.1 176 34.1
arahy.Tifrunner.gnm1.ann1.4S09TY Arachis hypogaea HOM05D002756 ORTHO05D002896 1.6e-08 64.7 91 47.3
arahy.Tifrunner.gnm1.ann1.X9KLSS Arachis hypogaea HOM05D002756 ORTHO05D002896 1.6e-08 64.7 91 47.3
Gorai.N024700 Gossypium raimondii HOM05D002756 ORTHO05D002896 1.6e-08 64.7 201 29.4
Thecc.01G392600 Theobroma cacao HOM05D002756 ORTHO05D002896 1.6e-08 64.7 158 32.9
PSO782G0082 Papaver somniferum HOM05D002756 ORTHO05D002896 2.1e-08 64.3 163 36.2
BolC8t48410H Brassica oleracea HOM05D002756 ORTHO05D002896 2.7e-08 63.9 419 25.8
AUR62019993 Chenopodium quinoa HOM05D002756 ORTHO05D002896 2.7e-08 63.9 156 37.8
BcaC07g38020 Brassica carinata HOM05D002756 ORTHO05D002896 4.7e-08 63.2 419 25.8
PSO063G5636 Papaver somniferum HOM05D002756 ORTHO05D002896 6.1e-08 62.8 163 36.2
Sp7g17320 Schrenkiella parvula HOM05D002756 ORTHO05D002896 6.1e-08 62.8 468 28.0
arahy.Tifrunner.gnm1.ann1.X0SKZJ Arachis hypogaea HOM05D002756 ORTHO05D002896 1.0e-07 62.0 481 25.6
A04p01640 Brassica napus HOM05D002756 ORTHO05D002896 1.4e-07 61.6 148 33.8
BraA04t15888Z Brassica rapa HOM05D002756 ORTHO05D002896 1.4e-07 61.6 148 33.8
FvH4_7g09850 Fragaria vesca HOM05D002756 ORTHO05D002896 1.4e-07 61.6 182 29.7
FAN06G0867 Fragaria x ananassa HOM05D002756 ORTHO05D008812 1.4e-07 61.6 182 29.7
FAN06G1585 Fragaria x ananassa HOM05D002756 ORTHO05D002896 1.4e-07 61.6 182 29.7
THA.LOC104802490 Tarenaya hassleriana HOM05D002756 ORTHO05D002896 1.4e-07 61.6 180 31.1
AT3G60380 Arabidopsis thaliana HOM05D002756 ORTHO05D002896 1.8e-07 61.2 179 30.2
unitig_744.g24633 Utricularia gibba HOM05D002756 ORTHO05D002896 1.8e-07 61.2 149 34.9
BcaB02g08170 Brassica carinata HOM05D002756 ORTHO05D002896 3.0e-07 60.5 167 32.9
CARHR170700 Cardamine hirsuta HOM05D002756 ORTHO05D002896 4.0e-07 60.1 183 28.4
FAN10G3136 Fragaria x ananassa HOM05D002756 ORTHO05D008812 4.0e-07 60.1 185 30.8
arahy.Tifrunner.gnm1.ann1.73EWJC Arachis hypogaea HOM05D002756 ORTHO05D002896 5.2e-07 59.7 483 24.8
BcaB04g18397 Brassica carinata HOM05D002756 ORTHO05D002896 5.2e-07 59.7 442 26.5
FAN01G1526 Fragaria x ananassa HOM05D002756 ORTHO05D002896 5.2e-07 59.7 185 30.3
FAN10G1547 Fragaria x ananassa HOM05D002756 ORTHO05D008812 5.2e-07 59.7 188 29.8
Actinidia14397 Actinidia chinensis HOM05D002756 ORTHO05D002896 6.8e-07 59.3 433 26.3
AL7G37860 Arabidopsis lyrata HOM05D002756 ORTHO05D002896 6.8e-07 59.3 434 23.5
ATR0057G080 Amborella trichopoda HOM05D002756 ORTHO05D002896 8.8e-07 58.9 125 36.0
Gohir.A03G006260 Gossypium hirsutum HOM05D002756 ORTHO05D002896 8.8e-07 58.9 284 29.9
BcaB02g07421 Brassica carinata HOM05D002756 ORTHO05D002896 1.2e-06 58.5 172 33.1
BcaNung00149 Brassica carinata HOM05D002756 ORTHO05D002896 1.2e-06 58.5 152 37.5
CiPaw.13G027800 Carya illinoinensis HOM05D002756 ORTHO05D002896 1.2e-06 58.5 190 31.6
AL5G42620 Arabidopsis lyrata HOM05D002756 ORTHO05D002896 1.5e-06 58.2 177 29.4
Cc02_g24920 Coffea canephora HOM05D002756 ORTHO05D002896 1.5e-06 58.2 206 28.6
BcaC09g50418 Brassica carinata HOM05D002756 ORTHO05D002896 2.6e-06 57.4 152 32.2
C01p25660 Brassica napus HOM05D002756 ORTHO05D002896 2.6e-06 57.4 152 32.2
AUR62013729 Chenopodium quinoa HOM05D027820 ORTHO05D002896 2.6e-06 57.4 179 28.5
HPP92_025690 Vanilla planifolia HOM05D002756 ORTHO05D002896 3.4e-06 57.0 375 28.8
CARHR223410 Cardamine hirsuta HOM05D002756 ORTHO05D002896 4.4e-06 56.6 147 34.7
Cfa011088 Carpinus fangiana HOM05D002756 ORTHO05D002896 4.4e-06 56.6 114 33.3
ClCG06G002590 Citrullus lanatus HOM05D002756 ORTHO05D002896 4.4e-06 56.6 219 31.1
Ah.05g173190 Amaranthus hybridus HOM05D027820 ORTHO05D002896 5.7e-06 56.2 152 31.6
Carub.0007s2457 Capsella rubella HOM05D002756 ORTHO05D002896 5.7e-06 56.2 436 27.8
RcHm_v2.0_Chr1g0347391 Rosa chinensis HOM05D002756 ORTHO05D002896 5.7e-06 56.2 98 37.8
Sp5g02840 Schrenkiella parvula HOM05D002756 ORTHO05D002896 5.7e-06 56.2 184 31.0
SpUn0080_0020 Schrenkiella parvula HOM05D002756 ORTHO05D002896 5.7e-06 56.2 184 31.0
COL.COLO4_37105 Corchorus olitorius HOM05D002756 ORTHO05D002896 7.5e-06 55.8 147 40.1
Thhalv10005806m.g Eutrema salsugineum HOM05D002756 ORTHO05D002896 9.8e-06 55.5 191 28.3
Lalb_Chr03g0040271 Lupinus albus HOM05D002756 ORTHO05D002896 9.8e-06 55.5 197 27.4
Phvul.008G045300 Phaseolus vulgaris HOM05D002756 ORTHO05D002896 9.8e-06 55.5 114 29.8


User provided reference genes

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