Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 5.2e-134 481.1 251 100.0
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 1.3e-129 466.5 252 96.8
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 1.2e-114 416.8 247 87.0
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 9.5e-112 407.1 259 81.5
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 8.1e-111 404.1 252 86.9
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 1.8e-110 402.9 233 90.6
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 8.1e-95 350.9 222 82.4
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 3.1e-78 295.8 253 57.7
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 1.5e-77 293.5 252 59.9
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 2.0e-77 293.1 253 58.1
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 3.8e-76 288.9 252 55.6
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 6.0e-74 281.6 249 55.4
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 1.0e-73 280.8 255 57.6
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 1.0e-73 280.8 255 57.6
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 5.7e-72 275.0 256 55.1
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 7.4e-72 274.6 255 55.3
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 1.3e-71 273.9 232 58.2
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 1.6e-71 273.5 256 53.5
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.4e-70 270.4 251 54.2
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 1.8e-70 270.0 238 54.2
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 4.1e-70 268.9 252 53.6
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 6.9e-70 268.1 256 52.7
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.5e-69 266.9 232 56.5
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 2.0e-69 266.5 253 53.8
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 2.6e-69 266.2 253 56.1
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 4.5e-69 265.4 255 53.3
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 4.5e-69 265.4 222 59.9
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 7.6e-69 264.6 256 53.9
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.7e-68 263.5 256 53.9
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 2.2e-68 263.1 259 53.3
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.9e-68 262.7 256 53.9
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 2.9e-68 262.7 248 52.8
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 3.8e-68 262.3 237 54.9
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 1.4e-67 260.4 243 56.0
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 1.9e-67 260.0 252 53.6
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 3.2e-67 259.2 248 53.6
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 4.2e-67 258.8 250 54.0
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 9.3e-67 257.7 254 49.6
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 1.6e-66 256.9 252 54.4
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 2.7e-66 256.1 254 51.6
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 3.5e-66 255.8 244 51.6
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 3.5e-66 255.8 246 54.1
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 6.7e-65 251.5 249 51.4
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.1e-64 250.8 251 49.4
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.9e-64 250.0 235 51.1
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 1.9e-64 250.0 250 51.2
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 5.7e-64 248.4 256 49.2
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 9.7e-64 247.7 255 49.8
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 3.7e-63 245.7 254 51.2
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 8.2e-63 244.6 246 51.2
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.4e-62 243.0 250 51.6
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 4.1e-62 242.3 236 52.5
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 5.3e-62 241.9 238 50.0
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 5.3e-62 241.9 250 50.4
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 6.9e-62 241.5 234 52.1
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 9.0e-62 241.1 243 49.4
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 1.2e-61 240.7 253 47.4
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 1.2e-61 240.7 235 54.5
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 1.5e-61 240.4 251 51.8
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.5e-61 240.4 248 50.4
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 2.0e-61 240.0 234 51.7
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 2.6e-61 239.6 248 50.4
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 3.4e-61 239.2 235 52.3
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 4.5e-61 238.8 256 51.6
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 5.9e-61 238.4 237 52.3
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 7.7e-61 238.0 264 47.3
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 1.0e-60 237.7 236 52.1
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 1.3e-60 237.3 247 47.8
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 1.3e-60 237.3 254 48.4
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 2.2e-60 236.5 243 49.8
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.9e-60 236.1 226 51.8
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 2.9e-60 236.1 232 51.7
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 3.8e-60 235.7 246 52.4
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 5.0e-60 235.3 253 48.2
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 8.5e-60 234.6 235 51.5
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 1.1e-59 234.2 254 49.2
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 1.4e-59 233.8 254 45.3
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 1.4e-59 233.8 250 47.2
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 3.2e-59 232.6 226 51.3
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 5.5e-59 231.9 236 51.7
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 7.2e-59 231.5 226 53.5
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 9.4e-59 231.1 255 46.3
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 9.4e-59 231.1 239 51.0
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 1.2e-58 230.7 254 48.8
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 1.2e-58 230.7 236 50.4
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 2.1e-58 229.9 237 51.5
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 7.9e-58 228.0 234 48.7
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 7.9e-58 228.0 235 48.5
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 1.0e-57 227.6 191 60.2
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 1.4e-57 227.3 256 47.7
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 1.4e-57 227.3 245 48.6
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 2.3e-57 226.5 255 47.1
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.3e-57 226.5 226 50.0
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 3.9e-57 225.7 254 46.9
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 3.9e-57 225.7 240 48.8
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 1.5e-56 223.8 237 47.3
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 2.5e-56 223.0 239 48.5
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 2.5e-56 223.0 239 47.7
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 5.7e-56 221.9 238 50.0
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 7.4e-56 221.5 238 48.3
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 7.4e-56 221.5 234 49.6
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 1.3e-55 220.7 239 47.7
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 1.3e-55 220.7 226 51.8
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 1.7e-55 220.3 237 48.9
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 1.7e-55 220.3 237 48.9
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 2.8e-55 219.5 238 47.5
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 3.7e-55 219.2 239 47.7
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 3.7e-55 219.2 238 47.5
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 3.7e-55 219.2 240 49.6
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 8.2e-55 218.0 210 53.3
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 1.8e-54 216.9 241 45.2
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 4.5e-53 212.2 259 44.0
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 7.7e-53 211.5 242 45.0
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 5.0e-52 208.8 250 44.8
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 1.9e-51 206.8 250 44.0
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 7.2e-51 204.9 186 57.0
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 7.2e-51 204.9 186 57.0
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 7.9e-50 201.4 229 48.9
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 7.9e-50 201.4 229 48.9
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 1.0e-49 201.1 253 44.3
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 1.1e-48 197.6 242 41.7
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 2.6e-48 196.4 234 44.9
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 7.4e-48 194.9 236 45.8
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 3.1e-46 189.5 182 53.8
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 3.1e-46 189.5 246 41.5
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 2.0e-45 186.8 256 44.1
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 1.3e-44 184.1 209 48.8
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 8.5e-44 181.4 204 48.0
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.1e-43 181.0 192 48.4
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 1.6e-42 177.2 168 54.8
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.0e-41 174.5 229 44.1
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 2.3e-41 173.3 234 44.0
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 2.8e-39 166.4 221 43.9
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 1.2e-37 161.0 211 43.1
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 9.4e-35 151.4 244 36.9
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 2.7e-34 149.8 161 49.7
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 3.7e-31 139.4 188 42.0
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 6.3e-31 138.7 99 62.6
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 5.5e-27 125.6 115 54.8
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 7.2e-27 125.2 91 65.9
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 2.7e-26 123.2 144 49.3
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 4.7e-26 122.5 102 61.8
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 2.6e-24 116.7 234 35.0
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 4.5e-21 105.9 86 60.5
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 8.6e-20 101.7 247 27.5
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 1.1e-19 101.3 144 41.0
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 3.3e-19 99.8 126 42.1
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 4.3e-19 99.4 141 41.1
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 7.3e-19 98.6 107 46.7
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 5.2e-17 92.4 73 53.4
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.8e-09 67.4 50 62.0
BolC3t13711H Brassica oleracea HOM05D000444 ORTHO05D000489 3.2e-06 56.6 44 59.1


User provided reference genes

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