Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 9.4e-136 486.9 249 100.0
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 1.0e-134 483.4 249 99.2
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.1e-128 463.4 249 95.2
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 9.4e-120 433.7 249 90.0
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.8e-115 419.5 249 86.3
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 1.2e-114 416.8 249 85.5
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.5e-114 414.8 249 85.1
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 1.2e-103 380.2 250 80.4
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 1.2e-103 380.2 250 80.4
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 6.1e-103 377.9 217 90.3
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 8.0e-103 377.5 246 81.3
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 1.8e-102 376.3 247 78.5
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 2.0e-101 372.9 246 78.5
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 5.7e-101 371.3 248 78.6
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 9.8e-101 370.5 219 84.9
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 1.1e-99 367.1 245 76.7
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.4e-99 366.7 249 77.5
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.2e-99 365.5 249 77.1
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 3.2e-99 365.5 249 77.1
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 3.2e-99 365.5 206 90.8
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 4.1e-99 365.2 246 75.2
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 2.0e-98 362.8 249 76.3
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 5.9e-98 361.3 228 82.5
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 7.8e-98 360.9 249 75.1
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 7.8e-98 360.9 246 77.2
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 2.3e-97 359.4 248 75.8
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 3.0e-97 359.0 249 73.9
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 5.0e-97 358.2 257 77.0
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 2.5e-96 355.9 249 74.7
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 2.5e-96 355.9 255 72.9
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 7.3e-96 354.4 250 74.0
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 1.2e-95 353.6 249 74.3
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 1.6e-95 353.2 251 75.7
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 2.1e-95 352.8 249 74.3
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 2.1e-95 352.8 247 74.9
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 1.1e-94 350.5 248 74.2
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 1.4e-94 350.1 245 73.9
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 5.2e-94 348.2 247 74.1
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 6.8e-94 347.8 246 74.0
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 8.9e-94 347.4 254 74.4
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 1.2e-93 347.1 247 74.1
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.5e-93 346.7 249 71.1
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.0e-93 346.3 249 71.1
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 3.4e-93 345.5 249 73.5
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 3.4e-93 345.5 252 71.4
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 4.4e-93 345.1 255 71.8
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 7.5e-93 344.4 246 71.5
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 7.5e-93 344.4 250 74.0
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 9.8e-93 344.0 266 69.9
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 9.8e-93 344.0 255 72.9
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 4.9e-92 341.7 250 72.4
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 4.9e-92 341.7 247 71.7
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 8.3e-92 340.9 250 72.4
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 8.3e-92 340.9 249 70.3
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.1e-91 340.5 247 71.7
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 1.4e-91 340.1 247 72.9
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 1.4e-91 340.1 249 72.3
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 1.9e-91 339.7 239 75.7
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 3.2e-91 339.0 248 71.8
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 4.1e-91 338.6 246 71.5
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 4.1e-91 338.6 235 74.9
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 5.4e-91 338.2 248 72.2
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 7.0e-91 337.8 256 70.7
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 7.0e-91 337.8 255 72.2
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.0e-91 337.8 248 72.6
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 9.2e-91 337.4 252 71.0
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 9.2e-91 337.4 243 75.7
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 2.7e-90 335.9 235 74.5
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 2.7e-90 335.9 248 71.4
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 3.5e-90 335.5 220 77.3
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 4.6e-90 335.1 255 70.6
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 6.0e-90 334.7 247 72.1
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.0e-89 334.0 248 72.2
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.3e-89 333.6 247 71.7
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 1.3e-89 333.6 250 71.6
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 2.3e-89 332.8 246 72.0
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.9e-89 332.0 248 71.8
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.9e-89 332.0 248 71.8
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.9e-89 332.0 248 71.8
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 3.9e-89 332.0 250 70.4
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 6.6e-89 331.3 248 71.8
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 8.6e-89 330.9 252 69.8
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 8.6e-89 330.9 248 71.4
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.1e-88 330.5 257 69.6
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 1.5e-88 330.1 252 70.6
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 4.3e-88 328.6 238 73.9
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 7.3e-88 327.8 249 70.3
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 9.5e-88 327.4 244 73.0
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 8.9e-86 320.9 252 65.9
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 4.4e-85 318.5 254 65.7
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 4.4e-85 318.5 249 67.1
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 7.5e-85 317.8 247 67.6
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 3.7e-84 315.5 260 66.9
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 6.4e-84 314.7 245 65.7
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 1.1e-83 313.9 247 64.8
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.1e-83 313.9 252 65.1
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.1e-83 313.9 232 71.1
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 1.9e-83 313.2 254 64.6
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 1.9e-83 313.2 259 66.0
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 2.4e-83 312.8 248 65.7
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 3.2e-83 312.4 249 68.7
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 3.2e-83 312.4 253 64.4
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 3.2e-83 312.4 246 63.8
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 3.2e-83 312.4 249 64.3
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 5.4e-83 311.6 233 69.1
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 5.4e-83 311.6 254 64.6
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 5.4e-83 311.6 256 64.1
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 5.4e-83 311.6 246 63.8
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 5.4e-83 311.6 250 68.8
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 7.1e-83 311.2 248 66.1
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 1.2e-82 310.5 246 63.8
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 2.1e-82 309.7 250 64.8
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 2.7e-82 309.3 253 62.8
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 2.7e-82 309.3 251 64.1
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 4.6e-82 308.5 233 68.7
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 1.0e-81 307.4 233 71.2
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 1.0e-81 307.4 315 57.8
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 6.6e-81 304.7 250 62.8
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 1.1e-80 303.9 252 64.7
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 2.5e-80 302.8 254 62.2
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 7.3e-80 301.2 263 65.8
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 9.5e-80 300.8 252 62.3
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 2.8e-79 299.3 251 62.9
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 8.1e-79 297.7 253 62.8
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 8.1e-79 297.7 253 62.8
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 8.1e-79 297.7 253 62.8
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 8.1e-79 297.7 246 64.6
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 1.2e-77 293.9 253 62.5
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 5.8e-77 291.6 323 53.9
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.0e-73 280.8 232 63.8
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 3.9e-73 278.9 317 53.0
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 3.3e-72 275.8 261 59.4
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 5.8e-69 265.0 247 57.9
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 9.3e-67 257.7 248 58.1
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 5.6e-64 248.4 246 60.2
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 1.3e-63 247.3 248 54.4
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.6e-63 246.9 152 78.3
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 2.1e-63 246.5 255 53.7
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.1e-62 242.7 233 57.5
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 2.6e-61 239.6 147 77.6
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 3.4e-61 239.2 136 84.6
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 4.2e-59 232.3 243 57.2
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 1.6e-58 230.3 250 52.8
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 3.8e-52 209.1 216 54.6
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 8.4e-52 208.0 167 63.5
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.5e-51 205.3 167 62.3
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 2.5e-48 196.4 268 47.0
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 2.9e-44 183.0 121 71.9
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 3.2e-43 179.5 288 41.3
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 9.3e-43 177.9 191 54.5
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 2.1e-42 176.8 117 75.2
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 3.6e-34 149.4 128 64.8
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 7.9e-34 148.3 265 37.7
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 7.9e-34 148.3 277 38.6
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 8.8e-33 144.8 130 65.4
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 1.0e-28 131.3 69 92.8
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 4.2e-27 125.9 95 63.2
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 2.1e-26 123.6 87 65.5
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 6.7e-25 118.6 103 65.0
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 1.9e-19 100.5 107 52.3
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.5e-19 100.1 78 66.7
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 3.6e-18 96.3 78 69.2
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 1.8e-17 94.0 121 49.6
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 1.8e-17 94.0 110 38.2
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 1.5e-16 90.9 78 65.4
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 2.6e-16 90.1 90 45.6
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 2.2e-12 77.0 96 52.1
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.2e-10 71.2 81 48.1
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 2.1e-10 70.5 134 42.5
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 5.2e-09 65.9 148 31.8


User provided reference genes

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