Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 6.1e-202 707.2 346 100.0
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 3.0e-201 704.9 346 99.4
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 8.6e-196 686.8 346 96.5
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 1.8e-185 652.5 348 92.2
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 5.8e-184 647.5 347 91.1
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 1.1e-158 563.5 347 81.0
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 2.7e-157 558.9 341 77.4
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 6.7e-156 554.3 343 76.7
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 1.1e-155 553.5 344 76.5
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 2.1e-154 549.3 343 76.7
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 3.7e-154 548.5 342 76.0
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 4.5e-152 541.6 342 76.3
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 1.3e-151 540.0 366 73.5
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 2.9e-151 538.9 343 74.6
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 6.4e-151 537.7 343 74.3
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 7.1e-150 534.3 345 75.4
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 1.2e-149 533.5 344 74.7
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.2e-149 533.5 343 74.1
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 1.6e-149 533.1 348 72.7
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 1.6e-149 533.1 338 74.3
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 1.6e-149 533.1 337 74.5
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 4.6e-149 531.6 347 75.2
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 7.9e-149 530.8 344 74.4
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 1.8e-148 529.6 341 73.9
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 3.0e-148 528.9 344 75.6
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 6.7e-148 527.7 347 75.2
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 6.7e-148 527.7 343 74.9
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 8.7e-148 527.3 341 74.2
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.5e-147 526.6 341 74.5
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 3.3e-147 525.4 342 73.4
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 2.1e-146 522.7 340 75.3
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 1.1e-145 520.4 347 73.5
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 1.8e-145 519.6 342 71.9
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 3.1e-145 518.8 375 69.3
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 4.0e-145 518.5 343 73.8
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 1.2e-144 516.9 338 73.1
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 1.2e-144 516.9 341 71.8
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 1.2e-144 516.9 340 72.9
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 2.6e-144 515.8 338 73.4
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 3.4e-144 515.4 343 73.2
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 3.4e-144 515.4 335 72.8
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 4.5e-144 515.0 344 70.6
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.3e-143 513.5 338 72.5
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 1.3e-143 513.5 338 73.1
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 1.7e-143 513.1 338 74.9
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 2.2e-143 512.7 345 71.3
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 2.9e-143 512.3 337 73.9
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 3.8e-143 511.9 341 72.1
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 6.5e-143 511.1 351 72.6
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 8.4e-143 510.8 336 70.8
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 8.4e-143 510.8 340 72.4
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.1e-142 510.4 338 71.9
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 4.2e-142 508.4 338 71.6
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 2.7e-141 505.8 344 69.8
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 3.5e-141 505.4 328 74.7
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 7.9e-141 504.2 337 71.8
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 7.9e-141 504.2 338 71.9
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 1.3e-140 503.4 343 70.0
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.8e-140 503.1 373 66.2
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 3.0e-140 502.3 343 70.6
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 3.9e-140 501.9 344 69.8
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 1.1e-139 500.4 337 71.2
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 1.1e-137 493.8 402 62.9
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 1.1e-137 493.8 345 70.7
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 1.1e-137 493.8 347 68.9
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 3.1e-137 492.3 346 69.1
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 4.1e-137 491.9 340 70.3
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 6.9e-137 491.1 343 70.3
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 1.5e-136 490.0 346 70.2
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 5.9e-136 488.0 339 70.8
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 7.6e-136 487.6 334 71.6
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 1.0e-135 487.3 349 69.1
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 2.2e-135 486.1 349 67.3
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 2.9e-135 485.7 338 69.2
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 9.3e-134 480.7 341 69.8
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 1.6e-133 479.9 341 69.8
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 3.6e-133 478.8 347 68.3
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 6.1e-133 478.0 350 68.3
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 3.9e-132 475.3 343 67.6
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 1.1e-131 473.8 348 67.8
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 1.5e-131 473.4 348 67.0
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 1.9e-131 473.0 291 77.7
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 4.3e-131 471.9 347 67.4
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 4.3e-131 471.9 350 67.1
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 4.3e-131 471.9 350 67.1
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 5.7e-131 471.5 349 67.0
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 7.4e-131 471.1 341 67.4
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 9.7e-131 470.7 350 67.1
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 2.2e-130 469.5 342 66.4
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 3.7e-130 468.8 341 66.6
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 1.4e-129 466.8 326 69.0
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 1.8e-129 466.5 338 65.4
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 4.1e-129 465.3 343 66.8
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 9.1e-129 464.2 234 91.5
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 9.1e-129 464.2 351 66.1
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 5.9e-128 461.5 344 67.7
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 8.5e-127 457.6 301 73.1
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 1.9e-126 456.4 299 73.6
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 3.2e-126 455.7 324 68.5
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 1.6e-125 453.4 338 66.0
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 9.1e-121 437.6 337 63.2
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 1.5e-120 436.8 242 90.1
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 7.2e-118 427.9 257 79.0
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 3.0e-116 422.5 337 62.6
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 1.8e-113 413.3 325 62.8
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 1.8e-113 413.3 248 81.9
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 7.0e-113 411.4 249 75.1
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 1.2e-112 410.6 249 74.7
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 4.1e-105 385.6 330 61.5
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 3.5e-104 382.5 302 60.9
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 9.1e-97 357.8 325 57.5
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 1.7e-95 353.6 328 54.0
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 1.4e-92 344.0 232 70.3
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.8e-92 343.6 238 71.4
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.8e-92 343.6 238 71.4
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 5.2e-92 342.0 236 71.2
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 6.8e-92 341.7 243 71.2
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 2.3e-87 326.6 326 52.8
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 4.9e-82 308.9 245 59.6
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 1.2e-67 261.2 173 71.1
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 5.1e-63 245.7 248 49.6
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 8.1e-61 238.4 163 69.9
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 6.8e-60 235.3 194 58.8
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 1.3e-58 231.1 194 58.2
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 3.3e-54 216.5 205 51.2
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 2.2e-50 203.8 180 57.2
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 5.6e-46 189.1 161 60.2
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 5.3e-28 129.4 79 75.9
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 6.5e-26 122.5 73 78.1
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 5.9e-19 99.4 57 73.7
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 5.5e-09 66.2 53 60.4


User provided reference genes

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