Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g019660 Solanum pennellii HOM05D006279 ORTHO05D008055 2.6e-71 271.9 137 100.0
Solyc06g054590.3 Solanum lycopersicum HOM05D006279 ORTHO05D008055 6.4e-70 267.3 137 98.5
PGSC0003DMG400030782 Solanum tuberosum HOM05D006279 ORTHO05D008055 2.5e-50 202.2 112 91.1
CAN.G1592.9 Capsicum annuum HOM05D006279 ORTHO05D008055 2.2e-46 189.1 112 84.8
Peaxi162Scf00033g00134 Petunia axillaris HOM05D006279 ORTHO05D008055 5.1e-43 177.9 110 80.9
Peaxi162Scf00386g00058 Petunia axillaris HOM05D006279 ORTHO05D008055 5.3e-40 167.9 115 76.5
CAN.G256.17 Capsicum annuum HOM05D006279 ORTHO05D008055 9.1e-40 167.2 96 84.4
Nitab4.5_0000644g0080 Nicotiana tabacum HOM05D006279 ORTHO05D008055 1.0e-38 163.7 115 74.8
Nitab4.5_0000829g0220 Nicotiana tabacum HOM05D006279 ORTHO05D008055 6.5e-38 161.0 115 73.0
Nitab4.5_0010800g0010 Nicotiana tabacum HOM05D006279 ORTHO05D008055 7.2e-37 157.5 115 72.2
Nitab4.5_0001688g0060 Nicotiana tabacum HOM05D006279 ORTHO05D008055 1.6e-36 156.4 115 73.0
PGSC0003DMG400022672 Solanum tuberosum HOM05D006279 ORTHO05D008055 6.1e-36 154.5 115 71.3
Cc09_g10080 Coffea canephora HOM05D006279 ORTHO05D008055 2.9e-30 135.6 116 62.1
CSS0005410 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 1.1e-29 133.7 103 67.0
CSS0021017 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 3.2e-29 132.1 103 66.0
Hma1.2p1_0847F.1_g227850 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 2.3e-27 125.9 113 61.1
Oeu006489.1 Olea europaea HOM05D006279 ORTHO05D008055 5.2e-27 124.8 121 57.0
Sabra05G0055000 Salix brachista HOM05D006279 ORTHO05D008055 5.2e-27 124.8 114 58.8
Dinv44192 Davidia involucrata HOM05D006279 ORTHO05D008055 6.7e-27 124.4 129 56.6
Nn2g15145 Nelumbo nucifera HOM05D006279 ORTHO05D008055 8.8e-27 124.0 110 57.3
Actinidia20026 Actinidia chinensis HOM05D006279 ORTHO05D008055 1.5e-26 123.2 95 60.0
QL10p041722 Quercus lobata HOM05D006279 ORTHO05D008055 1.5e-26 123.2 113 58.4
Thecc.08G189700 Theobroma cacao HOM05D006279 ORTHO05D008055 3.3e-26 122.1 114 58.8
TAR369G0312 Trochodendron aralioides HOM05D006279 ORTHO05D008055 5.7e-26 121.3 114 57.0
vmacro12040 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 5.7e-26 121.3 101 60.4
CANSAT64G0511 Cannabis sativa HOM05D006279 ORTHO05D008055 1.3e-25 120.2 93 65.6
Gohir.A05G286900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 1.3e-25 120.2 110 60.0
Migut.B01200 Erythranthe guttata HOM05D006279 ORTHO05D008055 2.2e-25 119.4 127 53.5
TAR623G0329 Trochodendron aralioides HOM05D006279 ORTHO05D008055 2.8e-25 119.0 116 54.3
Haze_02661 Corylus avellana HOM05D006279 ORTHO05D008055 3.7e-25 118.6 110 58.2
Gohir.D05G287900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 4.8e-25 118.2 110 58.2
Gorai.009G302900 Gossypium raimondii HOM05D006279 ORTHO05D008055 4.8e-25 118.2 110 58.2
Haze_02674 Corylus avellana HOM05D006279 ORTHO05D008055 6.3e-25 117.9 110 58.2
Duzib177G0075 Durio zibethinus HOM05D006279 ORTHO05D008055 8.2e-25 117.5 114 57.0
Potri.005G066900 Populus trichocarpa HOM05D006279 ORTHO05D008055 8.2e-25 117.5 114 57.0
CiPaw.14G026200 Carya illinoinensis HOM05D006279 ORTHO05D008055 1.1e-24 117.1 108 57.4
Potri.007G102600 Populus trichocarpa HOM05D006279 ORTHO05D008055 1.1e-24 117.1 114 57.9
Sabra07G0084300 Salix brachista HOM05D006279 ORTHO05D008055 1.1e-24 117.1 114 57.0
TWI79G1313 Tripterygium wilfordii HOM05D006279 ORTHO05D008055 1.4e-24 116.7 114 55.3
vmacro13565 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 1.8e-24 116.3 77 67.5
Cfa011174 Carpinus fangiana HOM05D006279 ORTHO05D008055 2.4e-24 115.9 110 56.4
Atru.chr1.2785 Acer truncatum HOM05D006279 ORTHO05D008055 3.1e-24 115.5 111 57.7
CANSAT78G0480 Cannabis sativa HOM05D006279 ORTHO05D008055 4.1e-24 115.2 95 63.2
VMungo1383G1366 Vigna mungo HOM05D006279 ORTHO05D008055 5.3e-24 114.8 119 56.3
Eucgr.I00130 Eucalyptus grandis HOM05D006279 ORTHO05D008055 9.1e-24 114.0 92 65.2
Actinidia30262 Actinidia chinensis HOM05D006279 ORTHO05D008055 1.2e-23 113.6 97 56.7
Phvul.008G125700 Phaseolus vulgaris HOM05D006279 ORTHO05D008055 1.2e-23 113.6 119 55.5
MSTRG.20541 Avicennia marina HOM05D006279 ORTHO05D008055 1.6e-23 113.2 111 54.1
COL.COLO4_11288 Corchorus olitorius HOM05D006279 ORTHO05D008055 1.6e-23 113.2 80 70.0
AUR62006855 Chenopodium quinoa HOM05D006279 ORTHO05D008055 2.0e-23 112.8 81 69.1
Glyma.08G354200 Glycine max HOM05D006279 ORTHO05D008055 2.0e-23 112.8 115 53.0
PGR119G2211 Punica granatum HOM05D006279 ORTHO05D008055 2.6e-23 112.5 76 67.1
AUR62000510 Chenopodium quinoa HOM05D006279 ORTHO05D008055 4.5e-23 111.7 68 75.0
Ah.06g190980 Amaranthus hybridus HOM05D006279 ORTHO05D008055 5.9e-23 111.3 98 58.2
Cpa.g.sc2692.1 Carica papaya HOM05D006279 ORTHO05D008055 5.9e-23 111.3 113 53.1
arahy.Tifrunner.gnm1.ann1.YQI87S Arachis hypogaea HOM05D006279 ORTHO05D008055 7.7e-23 110.9 116 53.4
THA.LOC104818424 Tarenaya hassleriana HOM05D006279 ORTHO05D008055 7.7e-23 110.9 111 55.0
TPR.G17035 Trifolium pratense HOM05D006279 ORTHO05D008055 7.7e-23 110.9 122 51.6
CARHR204140 Cardamine hirsuta HOM05D006279 ORTHO05D008055 1.3e-22 110.2 113 54.0
Manes.01G181300 Manihot esculenta HOM05D006279 ORTHO05D008055 2.2e-22 109.4 81 65.4
arahy.Tifrunner.gnm1.ann1.96G0FW Arachis hypogaea HOM05D006279 ORTHO05D008055 2.9e-22 109.0 116 52.6
Carub.0006s0782 Capsella rubella HOM05D006279 ORTHO05D008055 3.8e-22 108.6 89 62.9
BraA10t44844Z Brassica rapa HOM05D006279 ORTHO05D008055 5.0e-22 108.2 87 63.2
Ciclev10003637m.g Citrus clementina HOM05D006279 ORTHO05D008055 5.0e-22 108.2 115 53.0
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 6.5e-22 107.8 87 63.2
ClCG02G000360 Citrullus lanatus HOM05D006279 ORTHO05D008055 6.5e-22 107.8 93 58.1
BolC2t06340H Brassica oleracea HOM05D006279 ORTHO05D008055 8.5e-22 107.5 88 61.4
Glyma.18G170600 Glycine max HOM05D006279 ORTHO05D008055 1.5e-21 106.7 98 55.1
EL10Ac4g09617 Beta vulgaris HOM05D006279 ORTHO05D008055 1.9e-21 106.3 112 52.7
MBI06_g37673_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 1.9e-21 106.3 82 63.4
MBI06_g46723_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 1.9e-21 106.3 82 63.4
C09p68050 Brassica napus HOM05D006279 ORTHO05D008055 2.5e-21 105.9 83 61.4
Ca_13203_v3 Cicer arietinum L. HOM05D006279 ORTHO05D008055 2.5e-21 105.9 79 64.6
FAN09G2945 Fragaria x ananassa HOM05D006279 ORTHO05D008055 2.5e-21 105.9 109 52.3
MD10G1003300 Malus domestica HOM05D006279 ORTHO05D008055 2.5e-21 105.9 111 54.1
Rhsim10G0172600 Rhododendron simsii HOM05D006279 ORTHO05D008055 2.5e-21 105.9 70 67.1
BcaC03g13247 Brassica carinata HOM05D006279 ORTHO05D008055 3.2e-21 105.5 81 64.2
C02p03790 Brassica napus HOM05D006279 ORTHO05D008055 3.2e-21 105.5 81 64.2
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 3.2e-21 105.5 132 47.7
RcHm_v2.0_Chr2g0163441 Rosa chinensis HOM05D006279 ORTHO05D008055 3.2e-21 105.5 106 52.8
Sc09g0002260 Simmondsia chinensis HOM05D006279 ORTHO05D008055 3.2e-21 105.5 95 56.8
arahy.Tifrunner.gnm1.ann1.BRZ89T Arachis hypogaea HOM05D006279 ORTHO05D008055 4.2e-21 105.1 102 53.9
BcaB05g21561 Brassica carinata HOM05D006279 ORTHO05D008055 4.2e-21 105.1 88 60.2
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 4.2e-21 105.1 139 45.3
C09p68110 Brassica napus HOM05D006279 ORTHO05D008055 4.2e-21 105.1 139 45.3
C09p68150 Brassica napus HOM05D006279 ORTHO05D008055 4.2e-21 105.1 139 45.3
Prupe.3G241300 Prunus persica HOM05D006279 ORTHO05D008055 4.2e-21 105.1 106 55.7
AL6G19660 Arabidopsis lyrata HOM05D006279 ORTHO05D008055 5.5e-21 104.8 89 59.6
BcaB08g37221 Brassica carinata HOM05D006279 ORTHO05D008055 5.5e-21 104.8 88 61.4
Thhalv10015068m.g Eutrema salsugineum HOM05D006279 ORTHO05D008055 5.5e-21 104.8 88 60.2
MD09G1082400 Malus domestica HOM05D006279 ORTHO05D008055 5.5e-21 104.8 115 52.2
Aqoxy2G01154 Aquilegia oxysepala HOM05D006279 ORTHO05D008055 7.2e-21 104.4 87 60.9
AT5G09270 Arabidopsis thaliana HOM05D006279 ORTHO05D008055 7.2e-21 104.4 89 59.6
BraA02t04974Z Brassica rapa HOM05D006279 ORTHO05D008055 7.2e-21 104.4 88 60.2
Sp6g34040 Schrenkiella parvula HOM05D006279 ORTHO05D008055 9.4e-21 104.0 89 58.4
Lj1g0019467 Lotus japonicus HOM05D006279 ORTHO05D008055 1.2e-20 103.6 114 50.9
CsaV3_2G019480 Cucumis sativus L. HOM05D006279 ORTHO05D008055 2.1e-20 102.8 101 51.5
DCAR_026025 Daucus carota HOM05D006279 ORTHO05D008055 2.1e-20 102.8 72 70.8
Psat6g191840 Pisum sativum HOM05D006279 ORTHO05D008055 2.1e-20 102.8 119 47.1
GSVIVG01023542001 Vitis vinifera HOM05D006279 ORTHO05D008055 2.1e-20 102.8 104 54.8
FvH4_6g45500 Fragaria vesca HOM05D006279 ORTHO05D008055 3.6e-20 102.1 104 50.0
FAN14G0828 Fragaria x ananassa HOM05D006279 ORTHO05D008055 3.6e-20 102.1 104 50.0
FAN05G3461 Fragaria x ananassa HOM05D006279 ORTHO05D008055 4.7e-20 101.7 104 50.0
MELO3C023226.2 Cucumis melo HOM05D006279 ORTHO05D008055 6.1e-20 101.3 101 50.5
Lsat_1_v5_gn_5_86080 Lactuca sativa HOM05D006279 ORTHO05D008055 8.0e-20 100.9 121 47.9
Sed0009157 Sechium edule HOM05D006279 ORTHO05D008055 1.0e-19 100.5 95 53.7
COL.COLO4_13057 Corchorus olitorius HOM05D006279 ORTHO05D008055 3.0e-19 99.0 112 49.1
Eucgr.L03476 Eucalyptus grandis HOM05D006279 ORTHO05D008055 3.0e-19 99.0 70 65.7
Sopen01g029410 Solanum pennellii HOM05D006279 ORTHO05D008055 4.0e-19 98.6 68 66.2
HanXRQChr10g0308251 Helianthus annuus HOM05D006279 ORTHO05D008055 6.8e-19 97.8 113 49.6
SHI36067 Sapria himalayana HOM05D006279 ORTHO05D008055 8.8e-19 97.4 90 55.6
Lalb_Chr01g0022321 Lupinus albus HOM05D006279 ORTHO05D008055 1.2e-18 97.1 121 48.8
Psat4g003200 Pisum sativum HOM05D006279 ORTHO05D008055 3.4e-18 95.5 119 47.1
Aa31LG3G17730 Aethionema arabicum HOM05D006279 ORTHO05D008055 4.4e-18 95.1 83 56.6
ATR0824G232 Amborella trichopoda HOM05D006279 ORTHO05D008055 5.7e-18 94.7 80 58.8
Eucgr.I00143 Eucalyptus grandis HOM05D006279 ORTHO05D008055 1.3e-17 93.6 69 60.9
Medtr1g098510 Medicago truncatula HOM05D006279 ORTHO05D008055 1.3e-17 93.6 121 46.3
Eucgr.I00134 Eucalyptus grandis HOM05D006279 ORTHO05D008055 1.7e-17 93.2 69 60.9
HPP92_013811 Vanilla planifolia HOM05D006279 ORTHO05D008055 1.7e-17 93.2 79 55.7
Atru.chr9.833 Acer truncatum HOM05D000003 ORTHO05D000126 8.3e-17 90.9 80 57.5
Os01g0861000 Oryza sativa ssp. japonica HOM05D006279 ORTHO05D008055 3.5e-15 85.5 61 63.9
arahy.Tifrunner.gnm1.ann1.BUL9CE Arachis hypogaea HOM05D006279 ORTHO05D008055 7.7e-15 84.3 59 64.4
COL.COLO4_36340 Corchorus olitorius HOM05D006279 ORTHO05D008055 1.2e-12 77.0 47 66.0
SEGI_20234 Sequoiadendron giganteum HOM05D006279 ORTHO05D008055 1.6e-12 76.6 64 50.0
Mapoly0027s0076 Marchantia polymorpha HOM05D006279 ORTHO05D008055 4.4e-10 68.6 77 45.5
Hma1.2p1_4173F.1_g338420 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 1.7e-09 66.6 54 64.8
Pp3c8_7150 Physcomitrium patens HOM05D006279 ORTHO05D008055 3.7e-09 65.5 116 36.2


User provided reference genes

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